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| author |   Andrey Kislyuk <kislyuk@onyx.(none)> | 2009-12-07 05:41:45 -0500 |
|---|---|---|
| committer | Andrey Kislyuk <kislyuk@onyx.(none)> | 2009-12-07 05:41:45 -0500 |
| commit | e562873d82e3e2f5ea504d911013f9599623a2b1 (patch) | |
| tree | 0751cbf45ddc47397522cf3518ff9ceeb005853f /sci-biology/tophat | |
| parent | Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci (diff) | |
| download | sci-e562873d82e3e2f5ea504d911013f9599623a2b1.tar.gz sci-e562873d82e3e2f5ea504d911013f9599623a2b1.tar.bz2 sci-e562873d82e3e2f5ea504d911013f9599623a2b1.zip | |
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Diffstat (limited to 'sci-biology/tophat')
| -rw-r--r-- | sci-biology/tophat/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/tophat/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/tophat/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/tophat/tophat-1.0.10.ebuild | 33 |
4 files changed, 0 insertions, 52 deletions
diff --git a/sci-biology/tophat/ChangeLog b/sci-biology/tophat/ChangeLog deleted file mode 100644 index ed77fdf38..000000000 --- a/sci-biology/tophat/ChangeLog +++ /dev/null @@ -1,7 +0,0 @@ -# ChangeLog for sci-biology/tophat -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - - 16 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: - New package, thanks to Philippe Veber for the ebuild - diff --git a/sci-biology/tophat/Manifest b/sci-biology/tophat/Manifest deleted file mode 100644 index 682306805..000000000 --- a/sci-biology/tophat/Manifest +++ /dev/null @@ -1,3 +0,0 @@ -DIST tophat-1.0.10.tar.gz 484416 RMD160 3a3683c158c850edd6d9d083a4e0e506f473ff63 SHA1 8ad0781205ce644338007410cae50419861473ed SHA256 f3c1fb0014f16fa81734dbe52199521e764dcfc8b9746f04c019969da1fc778c -EBUILD tophat-1.0.10.ebuild 753 RMD160 e7ce3b89085928bd455ef1cac72e07ed8f5d5714 SHA1 b7281b35009179a443c54011ec1747dd9603989a SHA256 e58d7e9aeb605249e8ca6729977242648e1d3a8a8aea0b9387837beaeeb2dfa6 -MISC ChangeLog 25 RMD160 d9cca42a31e720bee80823e55c4dc219d89fd489 SHA1 241497e6867eb68739b57fa46a48c6f3d458b5da SHA256 a48d544fb0cbe7f6ebb41eeb0bbbfb6d2bf928a4b744fcf627e646eea2d1fc63 diff --git a/sci-biology/tophat/metadata.xml b/sci-biology/tophat/metadata.xml deleted file mode 100644 index 3302123e5..000000000 --- a/sci-biology/tophat/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> -</pkgmetadata> diff --git a/sci-biology/tophat/tophat-1.0.10.ebuild b/sci-biology/tophat/tophat-1.0.10.ebuild deleted file mode 100644 index f1caae137..000000000 --- a/sci-biology/tophat/tophat-1.0.10.ebuild +++ /dev/null @@ -1,33 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -inherit autotools - -DESCRIPTION="A splice junction mapper for short RNA-Seq reads" -HOMEPAGE="http://tophat.cbcb.umd.edu/" -SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -DEPEND="" -RDEPEND="sci-biology/bowtie" - -src_prepare() { - # Edit original Makefile to get rid of a - # race condition, because of missing dep - # (more precisely a incorrectly stated dep) - sed -i -e 's/\$(top_builddir)\/src\///g' src/Makefile.am - - eautoreconf || die -} - -src_install() { - emake DESTDIR="${D}" install || die "install failed" - dodoc AUTHORS INSTALL NEWS README THANKS -} |