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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-08-01 14:43:09 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-08-01 14:43:09 +0200 |
| commit | 51323d9c686f7a9bd5ec8b04d003353f8829e520 (patch) | |
| tree | 6f343083a07ae7f3ae07dc6d2296e589e3b9f096 /sci-biology | |
| parent | sci-biology/ensembl-tools: there are no *.pm to be installed, install example (diff) | |
| download | sci-51323d9c686f7a9bd5ec8b04d003353f8829e520.tar.gz sci-51323d9c686f7a9bd5ec8b04d003353f8829e520.tar.bz2 sci-51323d9c686f7a9bd5ec8b04d003353f8829e520.zip | |
sci-biology/ensembl-tools: add more dependencies
Package-Manager: portage-2.3.0
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/ensembl-tools/ensembl-tools-85.ebuild | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/sci-biology/ensembl-tools/ensembl-tools-85.ebuild b/sci-biology/ensembl-tools/ensembl-tools-85.ebuild index 0ed40bb9c..ffa1b63c4 100644 --- a/sci-biology/ensembl-tools/ensembl-tools-85.ebuild +++ b/sci-biology/ensembl-tools/ensembl-tools-85.ebuild @@ -17,7 +17,8 @@ SLOT="0" KEYWORDS="" # BUG: needs Bio::EnsEMBL::Registry IUSE="" -DEPEND="" +DEPEND="dev-perl/File-Copy-Recursive + dev-perl/Archive-Extract" #DEPEND="dev-perl/Perl-XS # dev-perl/Bio-DB-HTS" RDEPEND="${DEPEND}" @@ -28,7 +29,8 @@ src_install(){ perl_set_version insinto ${VENDOR_LIB}/${PN} cd scripts/variant_effect_predictor || die - perl INSTALL.pl --DESTDIR="${EPREFIX}"/"${DESTDIR}" --AUTO ac + # FIXME: INSTALL.pl does not exit upon error + ./INSTALL.pl --DESTDIR="${DESTDIR}"/"${EPREFIX}" --AUTO=ac || die newdoc README.txt variant_effect_predictor.txt cd ../../scripts/region_reporter || die dobin *.pl |