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authorAndrew Ammerlaan <andrewammerlaan@riseup.net>2021-01-19 14:14:38 +0100
committerAndrew Ammerlaan <andrewammerlaan@riseup.net>2021-01-19 14:14:38 +0100
commit5943f8924bc0af41dc6bd8f60f82174563b3e1e6 (patch)
tree77cc5d189a2ece00e526c9e0f03325115b5c8f25 /sci-biology
parentprofiles/package.mask: unmask IMAGE, fixed (diff)
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sci-biology/ICC: remove pack, upstream says 403
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/ICC/ICC-2.0.1.ebuild54
-rw-r--r--sci-biology/ICC/Manifest1
-rw-r--r--sci-biology/ICC/metadata.xml12
3 files changed, 0 insertions, 67 deletions
diff --git a/sci-biology/ICC/ICC-2.0.1.ebuild b/sci-biology/ICC/ICC-2.0.1.ebuild
deleted file mode 100644
index b6e13294a..000000000
--- a/sci-biology/ICC/ICC-2.0.1.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="Error corrector for Roche/454 and IonTorrent data"
-HOMEPAGE="http://indra.mullins.microbiol.washington.edu/ICC"
-SRC_URI="http://indra.mullins.microbiol.washington.edu/cgi-bin/ICC/info.cgi?ID=ICC_v2.0.1.zip -> ICC_v2.0.1.zip"
-
-LICENSE="all-rights-reserved"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
- dev-lang/perl
- dev-perl/Parallel-ForkManager
- sci-biology/ncbi-tools++"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"
-
-src_install(){
- dobin Scripts/*.pl
- dodoc README.txt
-}
-
-# testing: Blast/Linux/LICENSE OK
-# testing: Example/exampleReads.fas OK
-# testing: Example/exampleReads.qual OK
-# testing: Example/exampleReference.fas OK
-# testing: README.md OK
-# testing: README.txt OK
-# testing: Scripts/ OK
-# testing: Scripts/CC.pl OK
-# testing: Scripts/HIC.pl OK
-# testing: Scripts/IC.pl OK
-# testing: Scripts/alignRegion.pl OK
-# testing: Scripts/config.pl OK
-# testing: Scripts/lib/ OK
-# testing: Scripts/lib/.DS_Store OK
-# testing: Scripts/lib/Parallel/ OK
-# testing: Scripts/lib/Parallel/ForkManager.pm OK
-# testing: Scripts/lib/paths.pm OK
-# testing: Scripts/lib/seqAlign.pm OK
-# testing: Scripts/lib/utils.pm OK
-# testing: Scripts/ntFreq.pl OK
-# testing: Scripts/readQualFilter.pl OK
-# testing: Scripts/retrieveRegion.pl OK
-# testing: Scripts/retrieveWindows.pl OK
-# testing: Scripts/runBLAST.pl OK
-# testing: Scripts/runICC.pl OK
-# testing: Scripts/uniqueReads.pl OK
-# testing: VersionHistory.txt OK
diff --git a/sci-biology/ICC/Manifest b/sci-biology/ICC/Manifest
deleted file mode 100644
index 375391637..000000000
--- a/sci-biology/ICC/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST ICC_v2.0.1.zip 63756669 SHA256 475eb33c8a9c49babc746823a988494f645f2d437ddb46c6988fbd14df39b833 SHA512 2952c5489e81f0702d3854a5a6f9591c4674b559a58be647bcd24c9837e8208ed1187721063a95abc120dffd860e13bd996a4f89f5e90de2d56ccd3750cce42e WHIRLPOOL 23bad2bf3daef731a5ffe967fe99e2dac698131f6b5e7becc2e9f4eaf3e9aa791f34b346382c84247f08e6717c07977c2e0104b1adb6877db6f29129ea4b4b43
diff --git a/sci-biology/ICC/metadata.xml b/sci-biology/ICC/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-biology/ICC/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>