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authorJustin Lecher <jlec@gentoo.org>2015-09-30 16:21:21 +0200
committerJustin Lecher <jlec@gentoo.org>2015-09-30 16:21:21 +0200
commit5a9dcced5751603c1e56bbdf30dcdd39edeb8a53 (patch)
treef19228cf87c26831cd10fcfeb2217ce2647bf037 /sci-biology
parentsci-biology/spm: Fix SRC_URI to the original tarball (diff)
downloadsci-5a9dcced5751603c1e56bbdf30dcdd39edeb8a53.tar.gz
sci-5a9dcced5751603c1e56bbdf30dcdd39edeb8a53.tar.bz2
sci-5a9dcced5751603c1e56bbdf30dcdd39edeb8a53.zip
Add missing remote-ids to metadata
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/BBmap/metadata.xml5
-rw-r--r--sci-biology/BamView/metadata.xml5
-rw-r--r--sci-biology/CONTIGuator/metadata.xml5
-rw-r--r--sci-biology/EBARDenovo/metadata.xml5
-rw-r--r--sci-biology/FLASH/metadata.xml5
-rw-r--r--sci-biology/MeV/metadata.xml13
-rw-r--r--sci-biology/RSeQC/metadata.xml5
-rw-r--r--sci-biology/Ray/metadata.xml5
-rw-r--r--sci-biology/SolexaQA/metadata.xml5
-rw-r--r--sci-biology/TransDecoder/metadata.xml3
-rw-r--r--sci-biology/VarScan/metadata.xml5
-rw-r--r--sci-biology/abacas/metadata.xml5
-rw-r--r--sci-biology/amos/metadata.xml7
-rw-r--r--sci-biology/bambus/metadata.xml5
-rw-r--r--sci-biology/clview/metadata.xml5
-rw-r--r--sci-biology/cortex_var/metadata.xml5
-rw-r--r--sci-biology/estscan/metadata.xml5
-rw-r--r--sci-biology/fsa/metadata.xml5
-rw-r--r--sci-biology/gbrowse/metadata.xml7
-rw-r--r--sci-biology/genomeview-bin/metadata.xml5
-rw-r--r--sci-biology/glean/metadata.xml5
-rw-r--r--sci-biology/inGAP-bin/metadata.xml5
-rw-r--r--sci-biology/jtreeview/metadata.xml5
-rw-r--r--sci-biology/lucy/metadata.xml5
-rw-r--r--sci-biology/manatee-igs/metadata.xml5
-rw-r--r--sci-biology/manatee-jcvi/metadata.xml5
-rw-r--r--sci-biology/parafly/metadata.xml5
-rw-r--r--sci-biology/samstat/metadata.xml5
-rw-r--r--sci-biology/scaffold_builder/metadata.xml5
-rw-r--r--sci-biology/skewer-bin/metadata.xml5
-rw-r--r--sci-biology/staden/metadata.xml5
-rw-r--r--sci-biology/swissknife/metadata.xml5
-rw-r--r--sci-biology/tgicl/metadata.xml5
-rw-r--r--sci-biology/trowel/metadata.xml5
-rw-r--r--sci-biology/wgs-assembler/metadata.xml5
35 files changed, 144 insertions, 41 deletions
diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml
index 2bc893037..5a16160bb 100644
--- a/sci-biology/BBmap/metadata.xml
+++ b/sci-biology/BBmap/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">bbmap</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml
index 462eb581b..b78a98777 100644
--- a/sci-biology/BamView/metadata.xml
+++ b/sci-biology/BamView/metadata.xml
@@ -1,8 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
<maintainer>
<email>mmokrejs@fold.natur.cuni.cz</email>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">bamview</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/CONTIGuator/metadata.xml b/sci-biology/CONTIGuator/metadata.xml
index 2bc893037..3dd7dfdce 100644
--- a/sci-biology/CONTIGuator/metadata.xml
+++ b/sci-biology/CONTIGuator/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">contiguator</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/EBARDenovo/metadata.xml b/sci-biology/EBARDenovo/metadata.xml
index 2bc893037..0e1efe220 100644
--- a/sci-biology/EBARDenovo/metadata.xml
+++ b/sci-biology/EBARDenovo/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">ebardenovo</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/FLASH/metadata.xml b/sci-biology/FLASH/metadata.xml
index 2bc893037..cc10e6dfa 100644
--- a/sci-biology/FLASH/metadata.xml
+++ b/sci-biology/FLASH/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">flashpage</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml
index 91ee05ecf..ed5534d06 100644
--- a/sci-biology/MeV/metadata.xml
+++ b/sci-biology/MeV/metadata.xml
@@ -1,8 +1,11 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
-<herd>sci-biology</herd>
-<maintainer>
- <email>mmokrejs@fold.natur.cuni.cz</email>
-</maintainer>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ </maintainer>
+ <upstream>
+ <remote-id type="sourceforge">mev-tm4</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml
index 2bc893037..1690d4537 100644
--- a/sci-biology/RSeQC/metadata.xml
+++ b/sci-biology/RSeQC/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">rseqc</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml
index 07b525505..583ccc060 100644
--- a/sci-biology/Ray/metadata.xml
+++ b/sci-biology/Ray/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">denovoassembler</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/SolexaQA/metadata.xml b/sci-biology/SolexaQA/metadata.xml
index 2bc893037..c7c89f911 100644
--- a/sci-biology/SolexaQA/metadata.xml
+++ b/sci-biology/SolexaQA/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">clview</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/TransDecoder/metadata.xml b/sci-biology/TransDecoder/metadata.xml
index 33de46b4c..00208dfbf 100644
--- a/sci-biology/TransDecoder/metadata.xml
+++ b/sci-biology/TransDecoder/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -8,5 +8,6 @@
</maintainer>
<upstream>
<remote-id type="github">TransDecoder/TransDecoder</remote-id>
+ <remote-id type="sourceforge">transdecoder</remote-id>
</upstream>
</pkgmetadata>
diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml
index 897aa2e6b..d49d2ba4f 100644
--- a/sci-biology/VarScan/metadata.xml
+++ b/sci-biology/VarScan/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
+ <upstream>
+ <remote-id type="sourceforge">varscan</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml
index 2bc893037..8f79243ce 100644
--- a/sci-biology/abacas/metadata.xml
+++ b/sci-biology/abacas/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">abacas</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml
index 973202fc7..42cab917a 100644
--- a/sci-biology/amos/metadata.xml
+++ b/sci-biology/amos/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -11,5 +11,8 @@ AMOS is collection of tools and class interfaces for the assembly of DNA
sequencing reads. The package includes a robust infrastructure, modular assembly
pipelines, and tools for overlapping, consensus generation, contigging, and
assembly manipulation
-</longdescription>
+ </longdescription>
+ <upstream>
+ <remote-id type="sourceforge">amos</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/bambus/metadata.xml b/sci-biology/bambus/metadata.xml
index 8d87f01b2..627fd14ed 100644
--- a/sci-biology/bambus/metadata.xml
+++ b/sci-biology/bambus/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -7,4 +7,7 @@
<name>Martin Mokrejs</name>
</maintainer>
<longdescription>Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.</longdescription>
+ <upstream>
+ <remote-id type="sourceforge">amos</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml
index 07b525505..393a82878 100644
--- a/sci-biology/clview/metadata.xml
+++ b/sci-biology/clview/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">clview</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/cortex_var/metadata.xml b/sci-biology/cortex_var/metadata.xml
index 2bc893037..04da1640c 100644
--- a/sci-biology/cortex_var/metadata.xml
+++ b/sci-biology/cortex_var/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">cortexassembler</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/estscan/metadata.xml b/sci-biology/estscan/metadata.xml
index 14aff5c6f..15f280c22 100644
--- a/sci-biology/estscan/metadata.xml
+++ b/sci-biology/estscan/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -12,4 +12,7 @@
<use>
<flag name="ifc">Undocumented USE</flag>
</use>
+ <upstream>
+ <remote-id type="sourceforge">estscan</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/fsa/metadata.xml b/sci-biology/fsa/metadata.xml
index 2bc893037..b40b0c2aa 100644
--- a/sci-biology/fsa/metadata.xml
+++ b/sci-biology/fsa/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">fsa</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/gbrowse/metadata.xml b/sci-biology/gbrowse/metadata.xml
index 61916cbd7..268d5a048 100644
--- a/sci-biology/gbrowse/metadata.xml
+++ b/sci-biology/gbrowse/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer>
@@ -9,5 +9,8 @@
<herd>sci-biology</herd>
<longdescription lang="en">
GBrowse is a generic genome browser written in perl, could run as CGI, under mod_perl. Something called Apache::Registry should make it faster. It uses mysql or postgres as the storage engine.
- </longdescription>
+ </longdescription>
+ <upstream>
+ <remote-id type="sourceforge">gmod</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/genomeview-bin/metadata.xml b/sci-biology/genomeview-bin/metadata.xml
index 07b525505..556215900 100644
--- a/sci-biology/genomeview-bin/metadata.xml
+++ b/sci-biology/genomeview-bin/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">genomeview</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/glean/metadata.xml b/sci-biology/glean/metadata.xml
index 2bc893037..46b93e26a 100644
--- a/sci-biology/glean/metadata.xml
+++ b/sci-biology/glean/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">glean-gene</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/inGAP-bin/metadata.xml b/sci-biology/inGAP-bin/metadata.xml
index 2bc893037..8ed5082cc 100644
--- a/sci-biology/inGAP-bin/metadata.xml
+++ b/sci-biology/inGAP-bin/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">ingap</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/jtreeview/metadata.xml b/sci-biology/jtreeview/metadata.xml
index 2bc893037..68e07bd3b 100644
--- a/sci-biology/jtreeview/metadata.xml
+++ b/sci-biology/jtreeview/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">jtreeview</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/lucy/metadata.xml b/sci-biology/lucy/metadata.xml
index 07b525505..a69c00c78 100644
--- a/sci-biology/lucy/metadata.xml
+++ b/sci-biology/lucy/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">lucy</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/manatee-igs/metadata.xml b/sci-biology/manatee-igs/metadata.xml
index 2bc893037..695de044d 100644
--- a/sci-biology/manatee-igs/metadata.xml
+++ b/sci-biology/manatee-igs/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">manatee</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/manatee-jcvi/metadata.xml b/sci-biology/manatee-jcvi/metadata.xml
index 2bc893037..695de044d 100644
--- a/sci-biology/manatee-jcvi/metadata.xml
+++ b/sci-biology/manatee-jcvi/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">manatee</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/parafly/metadata.xml b/sci-biology/parafly/metadata.xml
index 2bc893037..d9410a9d6 100644
--- a/sci-biology/parafly/metadata.xml
+++ b/sci-biology/parafly/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">transdecoder</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/samstat/metadata.xml b/sci-biology/samstat/metadata.xml
index 2bc893037..2a4a3454d 100644
--- a/sci-biology/samstat/metadata.xml
+++ b/sci-biology/samstat/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">samstat</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml
index 2bc893037..01809e9e6 100644
--- a/sci-biology/scaffold_builder/metadata.xml
+++ b/sci-biology/scaffold_builder/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">scaffold-b</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/skewer-bin/metadata.xml b/sci-biology/skewer-bin/metadata.xml
index 2bc893037..0c9722d0e 100644
--- a/sci-biology/skewer-bin/metadata.xml
+++ b/sci-biology/skewer-bin/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">skewer</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/staden/metadata.xml b/sci-biology/staden/metadata.xml
index 2bc893037..bbb42e1db 100644
--- a/sci-biology/staden/metadata.xml
+++ b/sci-biology/staden/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">staden</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/swissknife/metadata.xml b/sci-biology/swissknife/metadata.xml
index f17a827e3..70d333ff0 100644
--- a/sci-biology/swissknife/metadata.xml
+++ b/sci-biology/swissknife/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
+ <upstream>
+ <remote-id type="sourceforge">swissknife</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/tgicl/metadata.xml b/sci-biology/tgicl/metadata.xml
index 2bc893037..3a53e90c1 100644
--- a/sci-biology/tgicl/metadata.xml
+++ b/sci-biology/tgicl/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">tgicl</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/trowel/metadata.xml b/sci-biology/trowel/metadata.xml
index 2bc893037..48ef8ee4c 100644
--- a/sci-biology/trowel/metadata.xml
+++ b/sci-biology/trowel/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
@@ -6,4 +6,7 @@
<email>mmokrejs@fold.natur.cuni.cz</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <upstream>
+ <remote-id type="sourceforge">trowel-ec</remote-id>
+ </upstream>
</pkgmetadata>
diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml
index f17a827e3..8cc5aa2c9 100644
--- a/sci-biology/wgs-assembler/metadata.xml
+++ b/sci-biology/wgs-assembler/metadata.xml
@@ -1,5 +1,8 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-biology</herd>
+ <upstream>
+ <remote-id type="sourceforge">wgs-assembler</remote-id>
+ </upstream>
</pkgmetadata>