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author | tulku <tulku@32389bae-6d03-0410-99cf-db05cde120eb> | 2006-04-19 16:28:39 +0000 |
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committer | tulku <tulku@32389bae-6d03-0410-99cf-db05cde120eb> | 2006-04-19 16:28:39 +0000 |
commit | ad92a5eb433a0fb192941f68378da0311257a4ed (patch) | |
tree | 70a174dde60aafdf6eba5363394f3949df4bffcb /sci-biology | |
parent | arpack cleaning (diff) | |
download | sci-ad92a5eb433a0fb192941f68378da0311257a4ed.tar.gz sci-ad92a5eb433a0fb192941f68378da0311257a4ed.tar.bz2 sci-ad92a5eb433a0fb192941f68378da0311257a4ed.zip |
Adding ebuild for generecon
git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@177 32389bae-6d03-0410-99cf-db05cde120eb
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/generecon/ChangeLog | 10 | ||||
-rw-r--r-- | sci-biology/generecon/Manifest | 5 | ||||
-rw-r--r-- | sci-biology/generecon/files/digest-generecon-1.2.1-r1 | 1 | ||||
-rw-r--r-- | sci-biology/generecon/files/generecon-docfiles.patch | 12 | ||||
-rw-r--r-- | sci-biology/generecon/generecon-1.2.1-r1.ebuild | 42 | ||||
-rw-r--r-- | sci-biology/generecon/metadata.xml | 9 |
6 files changed, 79 insertions, 0 deletions
diff --git a/sci-biology/generecon/ChangeLog b/sci-biology/generecon/ChangeLog new file mode 100644 index 000000000..ff5a98428 --- /dev/null +++ b/sci-biology/generecon/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/generecon +# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*generecon-1.2.1 (19 Apr 2006) + + 19 Apr 2006; Lucas Chiesa <lucas.chiesa@gmail.com>: + +generecon-1.2.1.ebuild, +metadata.xml, +ChangeLog, + Initial import. Thanks to Neil <nshephard@gmail.com> + for the initial ebuild. Closes bug #128514. diff --git a/sci-biology/generecon/Manifest b/sci-biology/generecon/Manifest new file mode 100644 index 000000000..035bd9dc9 --- /dev/null +++ b/sci-biology/generecon/Manifest @@ -0,0 +1,5 @@ +MD5 29a1e620d057818eb5edbc12f4c1f9ac ChangeLog 363 +MD5 2d5ea95a11b70d1869473dd8b3ccac1d files/digest-generecon-1.2.1-r1 67 +MD5 537dc4e80ebe82b913290cfc7a0f6144 files/generecon-docfiles.patch 435 +MD5 cbab1ca1555a5dd5c6196f8399eb1dfe generecon-1.2.1-r1.ebuild 1092 +MD5 5cfd1e62f34b60928bc68a829d31d4eb metadata.xml 261 diff --git a/sci-biology/generecon/files/digest-generecon-1.2.1-r1 b/sci-biology/generecon/files/digest-generecon-1.2.1-r1 new file mode 100644 index 000000000..3cb50a9a3 --- /dev/null +++ b/sci-biology/generecon/files/digest-generecon-1.2.1-r1 @@ -0,0 +1 @@ +MD5 bda6f2a7c40ddbe5f694050a299ef6a4 generecon-1.2.1.tar.gz 238270 diff --git a/sci-biology/generecon/files/generecon-docfiles.patch b/sci-biology/generecon/files/generecon-docfiles.patch new file mode 100644 index 000000000..79d63e73f --- /dev/null +++ b/sci-biology/generecon/files/generecon-docfiles.patch @@ -0,0 +1,12 @@ +diff -Nuar generecon-1.2.1.orig/Makefile.am generecon-1.2.1/Makefile.am +--- generecon-1.2.1.orig/Makefile.am 2006-04-19 12:52:18.000000000 -0300 ++++ generecon-1.2.1/Makefile.am 2006-04-19 12:55:53.000000000 -0300 +@@ -31,7 +31,7 @@ + bin_PROGRAMS = generecon + + +-docdir = ${prefix}/share/generecon/doc ++docdir = ${prefix}/share/doc/#PF# + dist_doc_DATA = + test_inputdir = ${prefix}/share/generecon/test-input + dist_test_input_DATA = diff --git a/sci-biology/generecon/generecon-1.2.1-r1.ebuild b/sci-biology/generecon/generecon-1.2.1-r1.ebuild new file mode 100644 index 000000000..61d4c699c --- /dev/null +++ b/sci-biology/generecon/generecon-1.2.1-r1.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit eutils + +DESCRIPTION="Generecon performs linkage disequilibrium gene mapping based on coalescent theory using Bayesian Markov Chain Monte Carlo methods." +HOMEPAGE="http://www.daimi.au.dk/~mailund/GeneRecon/" +SRC_URI="http://www.daimi.au.dk/~mailund/GeneRecon/download/${P}.tar.gz" +SLOT="0" + +# License of the package. This must match the name of file(s) in +# /usr/portage/licenses/. For complex license combination see the developer +# docs on gentoo.org for details. +LICENSE="GPL-2" + +KEYWORDS="x86" + +DEPEND="dev-util/guile + sci-libs/gsl" + +src_unpack() { + unpack ${A} + sed 's|#PF#|'${PF}'|g' ${FILESDIR}/${PN}-docfiles.patch > ${PN}-docfiles.patch + + epatch ${PN}-docfiles.patch + + cd ${S} + pwd + einfo "Regenerating autotools files..." + aclocal || die "aclocal failed" + automake || die "automake failed" +} + +src_compile() { + econf || die "econf failed" + emake || die "emake failed" +} + +src_install() { + make DESTDIR=${D} install || die "make install failed" +} diff --git a/sci-biology/generecon/metadata.xml b/sci-biology/generecon/metadata.xml new file mode 100644 index 000000000..963198591 --- /dev/null +++ b/sci-biology/generecon/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci</herd> + <maintainer> + <email>lucas.chiesa@gmail.com</email> + <name>Lucas Chiesa</name> + </maintainer> +</pkgmetadata> |