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authorJustin Lecher <jlec@gentoo.org>2015-01-10 13:41:42 +0100
committerJustin Lecher <jlec@gentoo.org>2015-01-10 13:41:42 +0100
commitcd6e016859ba3b052f662bfc482ebdac830c38a9 (patch)
treea00b038c7d3502e2b89f87a5d7d800a169ddd3e7 /sci-biology
parentMerge remote-tracking branch 'github/master' (diff)
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sci-biology/tigr-closure: Some QA, add license
Package-Manager: portage-2.2.15
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/tigr-closure/ChangeLog3
-rw-r--r--sci-biology/tigr-closure/tigr-closure-20080106.ebuild47
2 files changed, 25 insertions, 25 deletions
diff --git a/sci-biology/tigr-closure/ChangeLog b/sci-biology/tigr-closure/ChangeLog
index eba3b608f..a4bebc895 100644
--- a/sci-biology/tigr-closure/ChangeLog
+++ b/sci-biology/tigr-closure/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 10 Jan 2015; Justin Lecher <jlec@gentoo.org> tigr-closure-20080106.ebuild:
+ Some QA, add license
+
*tigr-closure-20080106 (07 Jan 2015)
07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
diff --git a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild b/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
index 068dde987..f06be636d 100644
--- a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
+++ b/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
@@ -11,7 +11,7 @@ HOMEPAGE="http://tigr-closure.sourceforge.net/"
# http://tigr-closure.svn.sourceforge.net/tigr-closure/
SRC_URI="tigr-closure-svn-20080106.tar.gz"
-LICENSE=""
+LICENSE="all-rights-reserved"
SLOT="0"
KEYWORDS=""
IUSE=""
@@ -20,48 +20,45 @@ DEPEND="dev-lang/perl"
RDEPEND=""
src_compile() {
- cd TIGR
- # install the two *.pm files into our perl path?
- cd ..
# Closure Work Order Processing (CWP - CLOVER)
# clover and oats
- cd ${WORKDIR}/CWPSystem/trunk/
+ cd "${WORKDIR}"/CWPSystem/trunk/ || die
# needs TIGR/EUIDService.pm in PERL paths
- make dist
+ emake dist
# how to install the files from install/ ?
- cd ../..
-
- #
- cd ScaffoldMgmt/trunk
- make dist
+ cd ../.. || die
+
+ #
+ cd ScaffoldMgmt/trunk || die
+ emake dist
# FIXME: unpack the .tar file into image during src_install()
- cd ../..
+ cd ../.. || die
# awfull
- cd ClosureQC/trunk/
- mkdir sandbox
- ${SANDBOX}=${WORKDIR}/sandbox
+ cd ClosureQC/trunk/ || die
+ mkdir sandbox || die
+ ${SANDBOX}="${WORKDIR}"/sandbox
# have ./src/, ./doc, ./install, ./test/work/drivers, ./test/work/getqc, ./test/tmp
- cd test
+ cd test || die
# ...
- cd ../../..
+ cd ../../.. || die
- #
- cd ClosureReactionSystem/trunk
- make BUILD=true
- cd ../..
+ #
+ cd ClosureReactionSystem/trunk || die
+ emake BUILD=true
+ cd ../.. || die
# some Java servlet?
- cd AserverConsoleEJB3Hibernate
+ cd AserverConsoleEJB3Hibernate || die
# huh?
- cd ../..
+ cd ../.. || die
}
src_install() {
- cd ${WORKDIR}/SequenceTiling
+ cd "${WORKDIR}"/SequenceTiling || die
dobin trunk/src/*.pl
- cd trunk/src/TIGR/SequenceTiling/
+ cd trunk/src/TIGR/SequenceTiling/ || die
myinst="DESTDIR=${D}"
perl-module_src_install
#