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authorje_fro <je_fro@32389bae-6d03-0410-99cf-db05cde120eb>2007-02-20 03:20:25 +0000
committerje_fro <je_fro@32389bae-6d03-0410-99cf-db05cde120eb>2007-02-20 03:20:25 +0000
commit27dde5b7f0ea23104be150ea234295263d566d90 (patch)
tree7c84fa02c398e0b09d525206c16cb5e5dad077c6 /sci-chemistry/apbs/files
parentremoving umfpack now in main tree (diff)
downloadsci-27dde5b7f0ea23104be150ea234295263d566d90.tar.gz
sci-27dde5b7f0ea23104be150ea234295263d566d90.tar.bz2
sci-27dde5b7f0ea23104be150ea234295263d566d90.zip
cleanup bogus patches
git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@492 32389bae-6d03-0410-99cf-db05cde120eb
Diffstat (limited to 'sci-chemistry/apbs/files')
-rw-r--r--sci-chemistry/apbs/files/apbs-examples-gentoo.patch30
-rwxr-xr-xsci-chemistry/apbs/files/apbs-gcc4-gentoo.patch20
-rw-r--r--sci-chemistry/apbs/files/digest-apbs-0.4.03
-rw-r--r--sci-chemistry/apbs/files/digest-apbs-0.5.03
4 files changed, 56 insertions, 0 deletions
diff --git a/sci-chemistry/apbs/files/apbs-examples-gentoo.patch b/sci-chemistry/apbs/files/apbs-examples-gentoo.patch
new file mode 100644
index 000000000..5c82bc288
--- /dev/null
+++ b/sci-chemistry/apbs/files/apbs-examples-gentoo.patch
@@ -0,0 +1,30 @@
+diff -Naur apbs-0.4.0/examples/born/runme apbs-0.4.0-new/examples/born/runme
+--- apbs-0.4.0/examples/born/runme 2002-08-13 14:35:41.000000000 +0000
++++ apbs-0.4.0-new/examples/born/runme 2006-03-09 03:15:09.000000000 +0000
+@@ -8,5 +8,5 @@
+ echo "Generating ion with $i radius..."
+ echo "ATOM 1 I ION 1 0.000 0.000 0.000 1.00 $i" \
+ > ion.pqr
+- ${bindir}/apbs apbs.in > OUTPUT-${i} 2>&1
++ /usr/bin/apbs apbs.in > OUTPUT-${i} 2>&1
+ done
+diff -Naur apbs-0.4.0/examples/ion-pmf/runme apbs-0.4.0-new/examples/ion-pmf/runme
+--- apbs-0.4.0/examples/ion-pmf/runme 2002-08-13 14:35:41.000000000 +0000
++++ apbs-0.4.0-new/examples/ion-pmf/runme 2006-03-09 03:16:11.000000000 +0000
+@@ -14,5 +14,5 @@
+ echo "ATOM 1 I ION 1 $i 0.000 0.000 1.00 2.00"\
+ > mol2.pqr
+ cat mol1.pqr mol2.pqr > complex.pqr
+- ${bindir}/apbs apbs.in > OUTPUT_${i} 2>&1
++ /usr/bin/apbs apbs.in > OUTPUT_${i} 2>&1
+ done
+diff -Naur apbs-0.4.0/examples/point-pmf/runme.sh apbs-0.4.0-new/examples/point-pmf/runme.sh
+--- apbs-0.4.0/examples/point-pmf/runme.sh 2004-02-12 17:14:02.000000000 +0000
++++ apbs-0.4.0-new/examples/point-pmf/runme.sh 2006-03-09 03:17:11.000000000 +0000
+@@ -20,5 +20,5 @@
+ echo "ATOM 1 I ION 1 $i 0.000 0.000 1.00 0.00"\
+ > mol2.pqr
+ cat mol1.pqr mol2.pqr > complex.pqr
+- ${bindir}/apbs apbs.in > OUTPUT_${i} 2>&1
++ /usr/bin/apbs apbs.in > OUTPUT_${i} 2>&1
+ done
diff --git a/sci-chemistry/apbs/files/apbs-gcc4-gentoo.patch b/sci-chemistry/apbs/files/apbs-gcc4-gentoo.patch
new file mode 100755
index 000000000..434a7fc0a
--- /dev/null
+++ b/sci-chemistry/apbs/files/apbs-gcc4-gentoo.patch
@@ -0,0 +1,20 @@
+--- apbs-0.4.0/configure 2005-12-14 14:11:17.000000000 -0500
++++ apbs-0.4.0-new/configure 2006-05-23 17:01:07.000000000 -0400
+@@ -3513,7 +3513,7 @@
+ ac_link='$F77 -o conftest$ac_exeext $FFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ ac_compiler_gnu=$ac_cv_f77_compiler_gnu
+ if test -n "$ac_tool_prefix"; then
+- for ac_prog in g77 f77 xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95
++ for ac_prog in g77 gfortran f77 xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+ set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+@@ -3555,7 +3555,7 @@
+ fi
+ if test -z "$F77"; then
+ ac_ct_F77=$F77
+- for ac_prog in g77 f77 xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95
++ for ac_prog in g77 gfortran f77 xlf frt pgf77 fl32 af77 fort77 f90 xlf90 pgf90 epcf90 f95 fort xlf95 lf95 g95
+ do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+ set dummy $ac_prog; ac_word=$2
diff --git a/sci-chemistry/apbs/files/digest-apbs-0.4.0 b/sci-chemistry/apbs/files/digest-apbs-0.4.0
new file mode 100644
index 000000000..26b788e6d
--- /dev/null
+++ b/sci-chemistry/apbs/files/digest-apbs-0.4.0
@@ -0,0 +1,3 @@
+MD5 a9d5f8b24a40087998267c9df3eecceb apbs-0.4.0.tar.gz 6490858
+RMD160 259c89efed2296eb20af1f8076adc767ef35228c apbs-0.4.0.tar.gz 6490858
+SHA256 d1f6637e10b3051e6f618abaa14063f8f9bafbbbad75058645866b606d708acc apbs-0.4.0.tar.gz 6490858
diff --git a/sci-chemistry/apbs/files/digest-apbs-0.5.0 b/sci-chemistry/apbs/files/digest-apbs-0.5.0
new file mode 100644
index 000000000..00ed5b63f
--- /dev/null
+++ b/sci-chemistry/apbs/files/digest-apbs-0.5.0
@@ -0,0 +1,3 @@
+MD5 80b201d182536cb5f914a23fca4a4732 apbs-0.5.0-source-2.tar.gz 10171621
+RMD160 31a00f89052cc32d0fdf3272c214f2145ac62067 apbs-0.5.0-source-2.tar.gz 10171621
+SHA256 5f99cc6141d34800cf9e93e0e23215b3f740f6e208318698e7011602e1630a08 apbs-0.5.0-source-2.tar.gz 10171621