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author | je_fro <je_fro@32389bae-6d03-0410-99cf-db05cde120eb> | 2008-09-30 03:44:22 +0000 |
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committer | je_fro <je_fro@32389bae-6d03-0410-99cf-db05cde120eb> | 2008-09-30 03:44:22 +0000 |
commit | 30fde7b3622dc7f8c7d3cdd445cd04834af57e26 (patch) | |
tree | 648f20731c29988882753b461526aad2c72e9048 /sci-chemistry/modeller | |
parent | Bump first batch of octave-forge packages to new revision. (diff) | |
download | sci-30fde7b3622dc7f8c7d3cdd445cd04834af57e26.tar.gz sci-30fde7b3622dc7f8c7d3cdd445cd04834af57e26.tar.bz2 sci-30fde7b3622dc7f8c7d3cdd445cd04834af57e26.zip |
latest version
git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@1302 32389bae-6d03-0410-99cf-db05cde120eb
Diffstat (limited to 'sci-chemistry/modeller')
-rw-r--r-- | sci-chemistry/modeller/Manifest | 2 | ||||
-rw-r--r-- | sci-chemistry/modeller/modeller-9.4.ebuild | 102 |
2 files changed, 104 insertions, 0 deletions
diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest index 942e125c2..927ef14db 100644 --- a/sci-chemistry/modeller/Manifest +++ b/sci-chemistry/modeller/Manifest @@ -1,3 +1,5 @@ DIST modeller-9v3.tar.gz 49912561 RMD160 9472bc951faa8e4a28b0834c58aa0d7100492412 SHA1 5f7589536923a9504ad52430fabf8dfc49dde3b1 SHA256 b70052c1fae18f4cba598ce15d3cfd46c2c0df10d23e066a65aceea59063f3ae +DIST modeller-9v4.tar.gz 49949423 RMD160 1dc1b97099708ce79055ec6496155c7e27a3efb1 SHA1 2d1432782714b54b01190e9ef4fc9bb454210a23 SHA256 c291ad617b3bd697e5bd5efede00d9869bb019d0a60d26344617fafa82b3d779 EBUILD modeller-9.3.ebuild 3086 RMD160 601b9b157895bcc549f51896b7a54a1bdf781802 SHA1 f620485a171de556a1dbdf10eccfa43f0e719f2b SHA256 26c381d12306018356ae3a97cc708ece970bcf07e77914026f0192119cf80649 +EBUILD modeller-9.4.ebuild 3086 RMD160 32088000bb7a7f7cba8b8e7a088f737cd6991f61 SHA1 077a0dd6cc9b766ed5d1f8589e356d86881fddba SHA256 9024d2e52616b56aba52ab2cecddf94ba4881a46067f6807d4258880b9be08b9 MISC ChangeLog 366 RMD160 c8e3df06513eba7af76d56f3f023881cbb7556f2 SHA1 40d13fa7a97a6fb959793c42be6afdb61e9dace8 SHA256 7aebd9473568ad2f12d41d4241479ed163cbed2eb116be1772f80eb08f5214d4 diff --git a/sci-chemistry/modeller/modeller-9.4.ebuild b/sci-chemistry/modeller/modeller-9.4.ebuild new file mode 100644 index 000000000..b144ffeeb --- /dev/null +++ b/sci-chemistry/modeller/modeller-9.4.ebuild @@ -0,0 +1,102 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit eutils python + +MY_PV="${PV/./v}" +LICENSE="modeller" +KEYWORDS="~amd64 ~x86" +DESCRIPTION="MODELLER is used for homology or comparative modeling of protein three-dimensional structures" +SRC_URI="http://salilab.org/${PN}/${MY_PV}/${PN}-${MY_PV}.tar.gz" +HOMEPAGE="http://salilab.org/${PN}/" +IUSE="" +RESTRICT="mirror" +SLOT="0" + +RDEPEND=">=dev-lang/python-2.4" +DEPEND="" + +src_install(){ + python_version + + VER=9v4 + case ${ARCH} in + x86) EXECUTABLE_TYPE="i386-intel8";; + amd64) EXECUTABLE_TYPE="x86_64-intel8";; + *) ewarn "Your arch "${ARCH}" does not appear supported at this time."||\ + die "Unsupported Arch";; + esac + + IN_PATH=/opt/modeller${VER} + + sed -e "s:EXECUTABLE_TYPE${VER}=xxx:EXECUTABLE_TYPE${VER}=${EXECUTABLE_TYPE}:g" \ + -e "s:MODINSTALL${VER}=xxx:MODINSTALL${VER}=\"${IN_PATH}\":g" \ + modeller-${VER}/bin/modscript > "${T}/mod${VER}" + exeinto ${IN_PATH}/bin/ + doexe "${T}/mod${VER}" + dosym ${IN_PATH}/bin/mod${VER} /opt/bin/mod${VER} + + sed -e "s;@TOPDIR\@;\"${IN_PATH}\";" \ + -e "s;@EXETYPE\@;$EXECUTABLE_TYPE;" \ + modeller-${VER}/bin/modpy.sh.in > "${T}/modpy.sh" + doexe "${T}/modpy.sh" + + insinto ${IN_PATH}/bin/ + doins -r modeller-${VER}/bin/{*top,lib} + exeinto ${IN_PATH}/bin/ + doexe modeller-${VER}/bin/{modslave.py,mod${VER}_${EXECUTABLE_TYPE}} + + exeinto /usr/lib/python${PYVER}/site-packages/ + doexe modeller-${VER}/lib/${EXECUTABLE_TYPE}/_modeller.so + dosym ${IN_PATH}/modlib/modeller /usr/lib/python${PYVER}/site-packages/modeller + dosym ${IN_PATH}/lib/${EXECUTABLE_TYPE}/_modeller.so\ + /usr/lib/python${PYVER}/site-packages/_modeller.so + + exeinto ${IN_PATH}/lib/${EXECUTABLE_TYPE}/ + doexe modeller-${VER}/lib/${EXECUTABLE_TYPE}/{lib*,_modeller.so} + exeinto ${IN_PATH}/lib/${EXECUTABLE_TYPE}/python${PYVER}/ + doexe modeller-${VER}/lib/${EXECUTABLE_TYPE}/python2.5/_modeller.so + dosym ${IN_PATH}/lib/${EXECUTABLE_TYPE}/libmodeller.so.1 \ + ${IN_PATH}/lib/${EXECUTABLE_TYPE}/libmodeller.so + + insinto ${IN_PATH}/modlib/ + doins -r modeller-${VER}/modlib/{*mat,*lib,*prob,*mdt,*bin,*de,*inp,*ini,modeller} + + insinto ${IN_PATH}/ + doins -r modeller-${VER}/src + + insinto /usr/share/${PN}/ + doins -r modeller-${VER}/examples + dohtml modeller-${VER}/doc/* + dodoc modeller-${VER}/{README,ChangeLog} + + cat >> "${T}/config.py" <<- EOF + install_dir = "${IN_PATH}/" + license = "YOURLICENSEKEY" + EOF + + insinto ${IN_PATH}/modlib/modeller/ + doins "${T}/config.py" +} + +pkg_postinst(){ + #Adapted from BUG #127628 + einfo "" + einfo " If you need to define your own residues" + einfo " read the FAQ and edit the following files:" + einfo "" + einfo " ${MY_D}/modlib/top_heav.lib" + einfo " ${MY_D}/modlib/radii.lib" + einfo " ${MY_D}/modlib/radii14.lib" + einfo " ${MY_D}/modlib/restyp.lib" + einfo "" + einfo " Good Luck and Happy Modeling :D" + einfo "" + echo + echo + ewarn "Obtain a license Key from" + ewarn "http://salilab.org/modeller/registration.html" + ewarn "and change the appropriate line in" + ewarn "${IN_PATH}/modlib/modeller/config.py" +} |