x11-libs/xview bump and sci-chemistry/nmrpipe

1 files changed, 132 insertions, 0 deletions

diff --git a/sci-chemistry/nmrpipe/nmrpipe-9.27.2007.222.14.56.ebuild b/sci-chemistry/nmrpipe/nmrpipe-9.27.2007.222.14.56.ebuild
new file mode 100644
index 000000000..67206ba69
--- /dev/null
+++ b/sci-chemistry/nmrpipe/nmrpipe-9.27.2007.222.14.56.ebuild
@@ -0,0 +1,132 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+DESCRIPTION="Spectral visualisation, analysis and Fourier processing"
+# The specific terms of this license are printed automatically on startup
+# by some NMRPipe applications. The user also has to accept them before
+# downloading the package.
+LICENSE="as-is"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/NMRPipe/"
+# The NMRPipe installation script which we are not allowed to modify
+# requires all the following to be present for a complete installation.
+# Many of the bundled applications and libraries are afterwards deleted
+# (by this ebuild). The Gentoo provided applications and libraries are
+# used instead. The notable exception is the Tcl/Tk libraries; NMRPipe
+# requires a modified version of these. Unfortunately, this requires to
+# redefine the location of the libraries, which is done by sourcing an
+# initialisation script. NMRPipe users are used to this, and this ebuild
+# also prints a notice to this effect.
+SRC_URI="${PN}.linux9.tar.Z
+	dyn.tar.Z
+	mfr.tar.Z
+	pdbH.tar.Z
+	valpha.tar
+	acme.tar.Z
+	binval.com
+	install.com"
+
+SLOT="0"
+IUSE=""
+# Right now, precompiled executables are only available for Linux on the
+# x86 architecture. The maintainer chose to keep the sources closed, but
+# says he will gladly provide precompiled executables for other platforms
+# if there are such requests.
+KEYWORDS="-* ~x86"
+
+# The maintainer absolutely wants to control redistribution.
+RESTRICT="fetch"
+
+DEPEND="app-shells/tcsh"
+
+RDEPEND="${DEPEND}
+	dev-lang/tcl
+	dev-lang/tk
+	dev-tcltk/blt
+	sys-libs/libtermcap-compat
+	sys-libs/ncurses
+	x11-libs/xview
+	x11-libs/libX11"
+
+S="${WORKDIR}"
+NMRBASE="/opt/${PN}"
+
+pkg_nofetch() {
+	einfo "Please visit:"
+	einfo "\t${HOMEPAGE}"
+	einfo
+	einfo "Contact the package maintainer, then download the following files:"
+	for i in ${A}; do
+		einfo "\t${i}"
+	done
+	einfo
+	einfo "Place the downloaded files in your distfiles directory:"
+	einfo "\t${DISTDIR}"
+	echo
+}
+
+src_unpack() {
+	# The installation script will unpack the package. We just provide symlinks
+	# to the archive files, ...
+	for i in ${PN}.linux9.tar.Z dyn.tar.Z mfr.tar.Z \
+			pdbH.tar.Z valpha.tar acme.tar.Z; do
+		ln -s "${DISTDIR}"/${i} ${i}
+	done
+	# ... copy the installation scripts ...
+	cp "${DISTDIR}"/{binval.com,install.com} .
+	# ... and make the installation scripts executable.
+	chmod +x binval.com install.com
+}
+
+src_compile() {
+	# Unset DISPLAY to avoid the interactive graphical test.
+	DISPLAY="" ./install.com "${S}" || die
+	# Remove the symlinks for the archives and the installation scripts.
+	for i in ${A}; do
+		rm ${i} || die "Failed to remove archive symlinks."
+	done
+	# Remove some of the bundled applications and libraries; they are
+	# provided by Gentoo instead.
+	rm -r nmrbin.linux9/{0.0,lib,*timestamp,xv,gnuplot*,rasmol*} \
+		|| die "Failed to remove unnecessary libraries."
+	# Remove the initialisation script generated during the installation.
+	# It contains incorrect hardcoded paths; only the "nmrInit.com" script
+	# should be used.
+	rm com/nmrInit.linux9.com || die "Failed to remove broken init script."
+	# Make the precompiled Linux binaries executable.
+	chmod +x nmrbin.linux9/* || die "Failed to make programs executable."
+	# Set the correct path to NMRPipe in the auxiliary scripts.
+	cd com
+	for i in *; do
+		sed -e "s%/u/delaglio%${NMRBASE}%" -i ${i} || die \
+			"Failed patching scripts."
+	done
+	sed -i "s:${WORKDIR}:${NMRBASE}:g" font.com
+	# Remove installation log files.
+	cd "${S}"
+	rm *.log || die "Failed to remove installation log."
+}
+
+src_install() {
+	newenvd "${FILESDIR}"/env-${PN} 40${PN} || die "Failed to install env file."
+	insinto ${NMRBASE}
+	insopts -m0755
+	doins -r * || die "Failed to install application."
+	dosym ${NMRBASE}/nmrbin.linux9 ${NMRBASE}/bin || die \
+		"Failed to symlink binaries."
+}
+
+pkg_postinst() {
+	echo
+	ewarn "Before using NMRPipe applications, users must source the following"
+	ewarn "csh script, which will set the necessary environment variables:"
+	ewarn "\t${NMRBASE}/com/nmrInit.com"
+	ewarn
+	ewarn "Be aware that this script redefines the locations of the Tcl"
+	ewarn "libraries. This could break other non-NMRPipe Tcl applications"
+	ewarn "run in the same session."
+	ewarn
+	ewarn "Using Dynamo does not require running an additional initialisation"
+	ewarn "script. The necessary environment variables should already be set."
+	echo
+}