diff options
author | Justin Lecher (jlec) <jlec@j-schmitz.net> | 2009-12-04 11:46:59 +0100 |
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committer | Justin Lecher (jlec) <jlec@j-schmitz.net> | 2009-12-04 11:48:15 +0100 |
commit | 5d24255631eff5b7d50dc18ab083285a9b1df2cd (patch) | |
tree | a6b1342fe532c90e908e7a9e2e8e4ecf675d1e4d /sci-chemistry | |
parent | app-arch/lbzip2 -- version bump to 0.1.9 (diff) | |
download | sci-5d24255631eff5b7d50dc18ab083285a9b1df2cd.tar.gz sci-5d24255631eff5b7d50dc18ab083285a9b1df2cd.tar.bz2 sci-5d24255631eff5b7d50dc18ab083285a9b1df2cd.zip |
sci-chemistry/coot -- version bump to 0.6 and cleanup of old versions
(Portage version: 2.2_rc55/git/Linux i686)
(Signed Manifest commit)
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/coot/ChangeLog | 8 | ||||
-rw-r--r-- | sci-chemistry/coot/Manifest | 22 | ||||
-rw-r--r-- | sci-chemistry/coot/coot-0.5.2.ebuild | 125 | ||||
-rw-r--r-- | sci-chemistry/coot/coot-0.6.ebuild (renamed from sci-chemistry/coot/coot-0.6_pre1-r2312.ebuild) | 43 | ||||
-rw-r--r-- | sci-chemistry/coot/coot-0.6_pre1-r2327.ebuild | 177 |
5 files changed, 29 insertions, 346 deletions
diff --git a/sci-chemistry/coot/ChangeLog b/sci-chemistry/coot/ChangeLog index 20c2e4247..d5939284c 100644 --- a/sci-chemistry/coot/ChangeLog +++ b/sci-chemistry/coot/ChangeLog @@ -2,6 +2,14 @@ # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*coot-0.6 (04 Dec 2009) + + 04 Dec 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> + -coot-0.6_pre1-r2312.ebuild, -coot-0.6_pre1-r2327.ebuild, + +coot-0.6.ebuild: + Version bump to 0.6 + Removed pre versions + 13 Nov 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> coot-9999.ebuild: removed dev-scheme/goosh dep since r2487 diff --git a/sci-chemistry/coot/Manifest b/sci-chemistry/coot/Manifest index fc0e8a10f..3dac33b90 100644 --- a/sci-chemistry/coot/Manifest +++ b/sci-chemistry/coot/Manifest @@ -1,3 +1,6 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + AUX 0.5.2-as-needed.patch 19562 RMD160 7c242801251cbd11a8143df793a832a860c5aacb SHA1 a7d6552e5a3bbdf4e28ac995a31b3c3059241dab SHA256 9f5be12beb7691eb1e187923b95edc5890e385fecb2ef2ecb5eb9991858bebc1 AUX 0.5.2-gcc-4.3.patch 260 RMD160 e6d72c24d7dc02e84c67198f3e82aa4215df9b77 SHA1 1dd99a49d35181808a9e30a1f41ab63b6077dda0 SHA256 2d215b8009449e2f234eeb6c1e08da1f2e7804fedcf5e1d69997a6d8355d37da AUX 0.5.2-gcc-4.4.patch 257 RMD160 d1ec251cda36ac201a8baa84d7dad542e72e0c7b SHA1 069af29c1de34e6af94ff463ca04e3fb3c19c209 SHA256 761db5b8cb4cc11050b833df1f87b9ea5d9ca8b3637d7e7b1f5b4f6b7d795177 @@ -16,13 +19,16 @@ AUX gtk.m4 8516 RMD160 3860fe211902d5b9290f0a70e7d75ebec6b0ec67 SHA1 98b93b82042 AUX gtkgl.m4 1137 RMD160 9f9712aeaa4efaf07a8c1c483abd4098ac823ef7 SHA1 f7bb50edc64d33d0d71b0a45a1aab8e89a0c2021 SHA256 5e73d3b9721b046d03f607b16e765395dcd9822d92d754137524644116c140f1 AUX imlib.m4 11371 RMD160 4470d0cf2d0f8298bea6565069acda8a44e1cd9d SHA1 c983c372cb6cca546bb3fd739f68199a94a741c8 SHA256 04fcea84564608fff1b8049170f4dd571e9b30723c29c46e31855fab26b84a91 AUX link-against-guile-gtk-properly.patch 800 RMD160 4215ea41c02e7db2c04dda191e0200cc1704d43c SHA1 5bd24ab8c651a147076289098956f545c6e431d6 SHA256 7805cdf4e34c532899a8c37eb19664fc95fc8bc440e770db7c87373a94e1fb2d -DIST coot-0.5.2.tar.gz 10160364 RMD160 5cee5e8da6e4d2ce06016f6f8935b395e65ddbf9 SHA1 041cc947a68296701deb153c0932ee20a3437323 SHA256 6245f85dfb796ee7f3488c0790531f8d5e29a9f6ea18411ae539e3993e4ed2d6 -DIST coot-0.6-pre-1-revision-2312.tar.gz 11014498 RMD160 d509629d4a4aaa042699b255270d02f19af5c1e7 SHA1 4502d18aa14eb1f0f2725e877b7ddfab8a145efd SHA256 9ac5076502c1cb0a45e3dd6c59ef9f39e2732bdfca5441bf59f0af398ca1be85 -DIST coot-0.6-pre-1-revision-2327.tar.gz 11022882 RMD160 e7dcfba74dc6468fd446757d595cc5087f651586 SHA1 3f69ba64ba4219ab073c5ed0838a8232e49fd3d2 SHA256 70eed4f32e41dc9d1dbca6836a4b25ee977a2e223631a8b1f0f7565f0bea258c -DIST greg-data.tar.gz 7853708 RMD160 e5dcf76edaefd4be23a963cf47b84e13c3928962 SHA1 11cb683ce9382968a759a4adcdf307f9cc22e78f SHA256 2ebe2246cbef9ff64da39ad979a3549007776b1837a3719f98fb5b0dbf15b61d -EBUILD coot-0.5.2.ebuild 3212 RMD160 485b95eb31d4b25fed8a4952b79a7ee9a6157bb1 SHA1 3922d0d186ccbb8e401c552742f8cd64e7ba7536 SHA256 05082d1ea84b06462833194940ba5a7c608485e16586c75727b1ce88aa94df7a -EBUILD coot-0.6_pre1-r2312.ebuild 4292 RMD160 b23453de258ad37d9239728ee3e5a0cf35dadfe8 SHA1 6964a215118c5a5880672be6c66e9666a4bff8f0 SHA256 fad86ab9c4a36aa8c7816d9bc3a4a7fa7be2e98ce56c3175e47c418594b935bc -EBUILD coot-0.6_pre1-r2327.ebuild 4292 RMD160 b23453de258ad37d9239728ee3e5a0cf35dadfe8 SHA1 6964a215118c5a5880672be6c66e9666a4bff8f0 SHA256 fad86ab9c4a36aa8c7816d9bc3a4a7fa7be2e98ce56c3175e47c418594b935bc +DIST coot-0.6.tar.gz 11929700 RMD160 6485a56f1d17b103e69b07b5fc128d266e83aa27 SHA1 ec3d486eda514e36bdbc99e8796484e584e4f851 SHA256 7700e7e758934ee5b4177c7bb8e1d7d564b838966dd3c77919fa08778627353b +DIST greg-data.tar.gz 7853711 RMD160 6da70a18af7c02139d9b9b1029bbf6624f0f1003 SHA1 2c9a336820eda69b0cca19dd8f2315b83ad96d65 SHA256 fd737f2b2337a589b849e1f6f8b3a3c422cc7650a8e3969e76d4141611621985 +EBUILD coot-0.6.ebuild 3483 RMD160 ccb7073bfe73955c85fef7d2a59f5cd2e8a9ce6f SHA1 c23507c9526ebd18353e976be4cf8090ed097733 SHA256 cf6dffd5cc517bc08de6f7235398428661ee3a993eea828c5c7dcdb178032761 EBUILD coot-9999.ebuild 3937 RMD160 66cf094e5268b11f7689088c0d4433f79942624b SHA1 b019e1edd18108c8d212cc162f6451445f5d1682 SHA256 dc4e77f01f87fb49352525554cb21b04411219f4c92b597549db2a277aabf433 -MISC ChangeLog 6603 RMD160 48c33eb53ef4472c3dba99f75e3d7e10df36903b SHA1 202b02286ae424059ed593597fbc39e389795f08 SHA256 7446eedd40772e3605ae25c53547f843bbe0eae3a740e3bed070301aa8ad443f +MISC ChangeLog 6811 RMD160 84ea0c17c43d5e0a5108ee9b1d90a242546acb90 SHA1 b2fb82585b8d418db1f8a37a6ea0ef973c27e802 SHA256 80eee56e45aae1f7cf195af22edbc258cbde1cb4b937cd20485685a269b6d0b5 MISC metadata.xml 316 RMD160 845cc100ac244efa5f02595717b5da635f87d2f1 SHA1 c870d2c52c44dee3bab8623e5b6095266f400813 SHA256 64f6dbcd3bb41b26fd7897089cd60ddb93f1ea7d75f9531bca94f28b07e21b2f +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.11 (GNU/Linux) + +iEYEARECAAYFAksY6KIACgkQgAnW8HDreRaFkACgtSVsoYePLRhrBJWcl+sIRmPa +JeUAn0kbx98C6txMbYfFfyMtOJ2/C/84 +=QscW +-----END PGP SIGNATURE----- diff --git a/sci-chemistry/coot/coot-0.5.2.ebuild b/sci-chemistry/coot/coot-0.5.2.ebuild deleted file mode 100644 index 348d1df99..000000000 --- a/sci-chemistry/coot/coot-0.5.2.ebuild +++ /dev/null @@ -1,125 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -inherit autotools eutils - -MY_S_PV=${PV}-${PR} -MY_S_P=${PN}-${MY_S_PV} -MY_PV=${PV} -MY_P=${PN}-${MY_PV} - -DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation" -HOMEPAGE="http://www.biop.ox.ac.uk/coot/" -if [[ ${MY_PV} = *pre* ]]; then - SRC_URI="http://www.biop.ox.ac.uk/coot/software/source/pre-releases/${MY_S_P}.tar.gz" -else - SRC_URI="http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz" -fi -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" -RDEPEND=">=sci-libs/gsl-1.3 - >=x11-libs/gtk+-2.2 - gnome-base/libgnomecanvas - =x11-libs/guile-gtk-2.1 - x11-libs/gtkglext - virtual/glut - virtual/opengl - dev-lang/python - dev-scheme/guile-gui - dev-scheme/net-http - dev-scheme/goosh - dev-scheme/guile-www - >=dev-scheme/guile-lib-0.1.6 - sci-libs/coot-data - sci-chemistry/reduce - sci-chemistry/refmac - sci-chemistry/probe - >=sci-libs/ccp4-libs-6.1 - >=sci-libs/clipper-20090210 - dev-python/pygtk - gnome-base/librsvg - >=dev-libs/gmp-4.2.2-r2" -DEPEND="${RDEPEND} - dev-lang/swig" -S="${WORKDIR}/${MY_P}" - -src_unpack() { - unpack ${A} - cd "${S}" - - # To send upstream - epatch "${FILESDIR}"/${PV}-gcc-4.3.patch - epatch "${FILESDIR}"/${PV}-gcc-4.4.patch - - epatch "${FILESDIR}"/${PV}-as-needed.patch - epatch "${FILESDIR}"/link-against-guile-gtk-properly.patch - epatch "${FILESDIR}"/fix-namespace-error.patch - - # Link against single-precision fftw - sed -i \ - -e "s:lfftw:lsfftw:g" \ - -e "s:lrfftw:lsrfftw:g" \ - "${S}"/macros/clipper.m4 - - # Fix where it looks for some binaries - sed -i \ - -e "s:/y/people/emsley/coot/Linux/bin/probe.2.11.050121.linux.RH9:/usr/bin/probe:g" \ - -e "s:/y/people/emsley/coot/Linux/bin/reduce.2.21.030604:/usr/bin/reduce:g" \ - "${S}"/scheme/group-settings.scm - - # Look for clipper slotted with '-2' suffix -# sed -i \ -# -e "s~\(-lclipper[[:alnum:]-]*\)~\1-2~g" \ -# "${S}"/macros/clipper.m4 \ -# || die "sed to find -2 slotted libraries failed" -# grep 'include.*clipper' -rl . \ -# | xargs sed -i \ -# -e "s~\(include.*clipper\)/~\1-2/~g" \ -# || die "sed to find -2 slotted headers failed" - - # So we don't need to depend on crazy old gtk and friends - cp "${FILESDIR}"/*.m4 "${S}"/macros/ - - cd "${S}" - eautoreconf -} - -src_compile() { - # All the --with's are used to activate various parts. - # Yes, this is broken behavior. - econf \ - --includedir='${prefix}/include/coot' \ - --with-gtkcanvas-prefix=/usr \ - --with-clipper-prefix=/usr \ - --with-mmdb-prefix=/usr \ - --with-ssmlib-prefix=/usr \ - --with-guile \ - --with-python=/usr \ - --with-guile-gtk \ - --with-gtk2 \ - --with-pygtk - - # Regenerate wrappers, otherwise at least gtk-2 build fails - pushd src - rm -f coot_wrap_python.cc coot_wrap_python_pre.cc \ - && emake coot_wrap_python.cc \ - || die "failed to regenerate python wrapper" - - rm -f coot_wrap_guile.cc coot_wrap_guile_pre.cc \ - && emake coot_wrap_guile.cc \ - ||die "failed to regenerate guile wrapper" - popd - - emake || die "emake failed" -} - -src_install() { - emake DESTDIR="${D}" install || die "install failed" - - # Install misses this - insinto /usr/share/coot/python - doins "${S}"/src/coot.py -} diff --git a/sci-chemistry/coot/coot-0.6_pre1-r2312.ebuild b/sci-chemistry/coot/coot-0.6.ebuild index 3cb65f922..8a6bf7bcc 100644 --- a/sci-chemistry/coot/coot-0.6_pre1-r2312.ebuild +++ b/sci-chemistry/coot/coot-0.6.ebuild @@ -12,15 +12,12 @@ MY_S_P=${MY_S2_P}-${PR/r/revision-} MY_PV=${PV} MY_P=${PN}-${MY_PV} +ESVN_REPO_URI="http://coot.googlecode.com/svn/trunk" + DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation" HOMEPAGE="http://www.biop.ox.ac.uk/coot/" -if [[ ${MY_PV} = *pre* ]]; then - SRC_URI="http://www.biop.ox.ac.uk/coot/software/source/pre-releases/${MY_S_P}.tar.gz" -else - SRC_URI="http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz" -fi SRC_URI=" - ${SRC_URI} + http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz test? ( http://www.biop.ox.ac.uk/coot/devel/greg-data.tar.gz )" SLOT="0" @@ -46,7 +43,6 @@ XDEPS=" SCHEMEDEPS=" dev-scheme/net-http - dev-scheme/goosh dev-scheme/guile-gui >=dev-scheme/guile-lib-0.1.6 dev-scheme/guile-www @@ -57,7 +53,8 @@ RDEPEND=" ${XDEPS} ${SCHEMEDEPS} dev-python/pygtk - >=dev-libs/gmp-4.2.2-r2" + >=dev-libs/gmp-4.2.2-r2 + >=net-misc/curl-7.19.6" DEPEND="${RDEPEND} dev-lang/swig test? ( dev-scheme/greg )" @@ -66,8 +63,6 @@ DEPEND="${RDEPEND} S="${WORKDIR}/${MY_S2_P}" PATCHES=( - "${FILESDIR}"/${PV}-as-needed.patch - "${FILESDIR}"/${PV}-test-rama.patch "${FILESDIR}"/link-against-guile-gtk-properly.patch "${FILESDIR}"/fix-namespace-error.patch ) @@ -81,12 +76,6 @@ src_prepare() { -e "s:lrfftw:lsrfftw:g" \ "${S}"/macros/clipper.m4 - # Fix where it looks for some binaries - sed -i \ - -e "s:/y/people/emsley/coot/Linux/bin/probe.2.11.050121.linux.RH9:/usr/bin/probe:g" \ - -e "s:/y/people/emsley/coot/Linux/bin/reduce.2.21.030604:/usr/bin/reduce:g" \ - "${S}"/scheme/group-settings.scm - # So we don't need to depend on crazy old gtk and friends cp "${FILESDIR}"/*.m4 "${S}"/macros/ @@ -111,27 +100,14 @@ src_configure() { } src_compile() { - # Regenerate wrappers, otherwise at least gtk-2 build fails - pushd src - rm -f coot_wrap_python.cc coot_wrap_python_pre.cc \ - && emake coot_wrap_python.cc \ - || die "failed to regenerate python wrapper" - - rm -f coot_wrap_guile.cc coot_wrap_guile_pre.cc \ - && emake coot_wrap_guile.cc \ - ||die "failed to regenerate guile wrapper" - popd - emake || die "emake failed" - cp "${S}"/src/coot.py python/ + cp "${S}"/src/coot_gtk2.py python/coot.py || die } src_test() { # emake check || die - ln -sf ../data "${S}"/data - mkdir "${T}"/coot_test export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb" @@ -144,7 +120,7 @@ src_test() { export PYTHONHOME=/usr export CCP4_SCR="${T}"/coot_test - export TESTROOT="${S}" + export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data cat > command-line-greg.scm <<- EOF (use-modules (ice-9 greg)) @@ -157,11 +133,6 @@ src_test() { (coot-real-exit 1))) EOF - sed \ - -e "s:HOME:TESTROOT:g" \ - -i greg-tests/begin.grg \ - || die - einfo "Running test with following paths ..." einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES" einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR" diff --git a/sci-chemistry/coot/coot-0.6_pre1-r2327.ebuild b/sci-chemistry/coot/coot-0.6_pre1-r2327.ebuild deleted file mode 100644 index 3cb65f922..000000000 --- a/sci-chemistry/coot/coot-0.6_pre1-r2327.ebuild +++ /dev/null @@ -1,177 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="2" - -inherit autotools base versionator - -MY_S2_PV=$(replace_version_separator 2 - ${PV}) -MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1} -MY_S_P=${MY_S2_P}-${PR/r/revision-} -MY_PV=${PV} -MY_P=${PN}-${MY_PV} - -DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation" -HOMEPAGE="http://www.biop.ox.ac.uk/coot/" -if [[ ${MY_PV} = *pre* ]]; then - SRC_URI="http://www.biop.ox.ac.uk/coot/software/source/pre-releases/${MY_S_P}.tar.gz" -else - SRC_URI="http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz" -fi -SRC_URI=" - ${SRC_URI} - test? ( http://www.biop.ox.ac.uk/coot/devel/greg-data.tar.gz )" - -SLOT="0" -LICENSE="GPL-3" -KEYWORDS="~amd64 ~x86" -IUSE="test" - -SCIDEPS=" - >=sci-libs/ccp4-libs-6.1 - >=sci-libs/clipper-20090520 - >=sci-libs/coot-data-2 - >=sci-libs/gsl-1.3 - sci-chemistry/reduce - sci-chemistry/refmac - sci-chemistry/probe" - -XDEPS=" - gnome-base/libgnomecanvas - gnome-base/librsvg - virtual/glut - >=x11-libs/gtk+-2.2 - x11-libs/gtkglext" - -SCHEMEDEPS=" - dev-scheme/net-http - dev-scheme/goosh - dev-scheme/guile-gui - >=dev-scheme/guile-lib-0.1.6 - dev-scheme/guile-www - =x11-libs/guile-gtk-2.1" - -RDEPEND=" - ${SCIDEPS} - ${XDEPS} - ${SCHEMEDEPS} - dev-python/pygtk - >=dev-libs/gmp-4.2.2-r2" -DEPEND="${RDEPEND} - dev-lang/swig - test? ( dev-scheme/greg )" - -#S="${WORKDIR}/${MY_P}" -S="${WORKDIR}/${MY_S2_P}" - -PATCHES=( - "${FILESDIR}"/${PV}-as-needed.patch - "${FILESDIR}"/${PV}-test-rama.patch - "${FILESDIR}"/link-against-guile-gtk-properly.patch - "${FILESDIR}"/fix-namespace-error.patch - ) - -src_prepare() { - base_src_prepare - - # Link against single-precision fftw - sed -i \ - -e "s:lfftw:lsfftw:g" \ - -e "s:lrfftw:lsrfftw:g" \ - "${S}"/macros/clipper.m4 - - # Fix where it looks for some binaries - sed -i \ - -e "s:/y/people/emsley/coot/Linux/bin/probe.2.11.050121.linux.RH9:/usr/bin/probe:g" \ - -e "s:/y/people/emsley/coot/Linux/bin/reduce.2.21.030604:/usr/bin/reduce:g" \ - "${S}"/scheme/group-settings.scm - - # So we don't need to depend on crazy old gtk and friends - cp "${FILESDIR}"/*.m4 "${S}"/macros/ - - eautoreconf -} - -src_configure() { - # All the --with's are used to activate various parts. - # Yes, this is broken behavior. - econf \ - --includedir='${prefix}/include/coot' \ - --with-gtkcanvas-prefix=/usr \ - --with-clipper-prefix=/usr \ - --with-mmdb-prefix=/usr \ - --with-ssmlib-prefix=/usr \ - --with-gtkgl-prefix=/usr \ - --with-guile \ - --with-python=/usr \ - --with-guile-gtk \ - --with-gtk2 \ - --with-pygtk -} - -src_compile() { - # Regenerate wrappers, otherwise at least gtk-2 build fails - pushd src - rm -f coot_wrap_python.cc coot_wrap_python_pre.cc \ - && emake coot_wrap_python.cc \ - || die "failed to regenerate python wrapper" - - rm -f coot_wrap_guile.cc coot_wrap_guile_pre.cc \ - && emake coot_wrap_guile.cc \ - ||die "failed to regenerate guile wrapper" - popd - - emake || die "emake failed" - - cp "${S}"/src/coot.py python/ -} - -src_test() { -# emake check || die - - ln -sf ../data "${S}"/data - - mkdir "${T}"/coot_test - - export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb" - export COOT_SCHEME_DIR="${S}/scheme/" - export COOT_RESOURCES_FILE="${S}/cootrc" - export COOT_PIXMAPS_DIR="${S}/pixmaps" - export COOT_DATA_DIR="${S}" - export COOT_PYTHON_DIR="${S}/python" - export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}" - export PYTHONHOME=/usr - export CCP4_SCR="${T}"/coot_test - - export TESTROOT="${S}" - - cat > command-line-greg.scm <<- EOF - (use-modules (ice-9 greg)) - (set! greg-tools (list "greg-tests")) - (set! greg-debug #t) - (set! greg-verbose 5) - (let ((r (greg-test-run))) - (if r - (coot-real-exit 0) - (coot-real-exit 1))) - EOF - - sed \ - -e "s:HOME:TESTROOT:g" \ - -i greg-tests/begin.grg \ - || die - - einfo "Running test with following paths ..." - einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES" - einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR" - einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE" - einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR" - einfo "COOT_DATA_DIR $COOT_DATA_DIR" - einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR" - einfo "PYTHONPATH $PYTHONPATH" - einfo "PYTHONHOME $PYTHONHOME" - einfo "CCP4_SCR ${CCP4_SCR}" - - "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die -} |