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authorJustin Lecher <jlec@gentoo.org>2017-11-18 17:51:16 +0000
committerJustin Lecher <jlec@gentoo.org>2017-11-18 17:51:16 +0000
commit9603d74481a45d22eed254faabb63248525b45d5 (patch)
treee0e97325df749afaf7edd08b682980fe7bece7f6 /sci-chemistry
parentsci-chemistry/redcat: Drop due to unmet dependency (diff)
downloadsci-9603d74481a45d22eed254faabb63248525b45d5.tar.gz
sci-9603d74481a45d22eed254faabb63248525b45d5.tar.bz2
sci-9603d74481a45d22eed254faabb63248525b45d5.zip
sci-chemistry/specView: Dropped due to missing dependency
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/specView/Manifest4
-rw-r--r--sci-chemistry/specView/files/specView9
-rw-r--r--sci-chemistry/specView/metadata.xml8
-rw-r--r--sci-chemistry/specView/specView-1.0.2.ebuild87
-rw-r--r--sci-chemistry/specView/specView-1.0.3.ebuild87
-rw-r--r--sci-chemistry/specView/specView-1.0.3_p2.ebuild87
-rw-r--r--sci-chemistry/specView/specView-1.0.4.ebuild88
7 files changed, 0 insertions, 370 deletions
diff --git a/sci-chemistry/specView/Manifest b/sci-chemistry/specView/Manifest
deleted file mode 100644
index 8fabed085..000000000
--- a/sci-chemistry/specView/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST specView1.0.2.tar.gz 15811413 SHA256 3a8d8b9e0f15e6481d8d6ea9a1f51d06a3cd2a4295acc3dfaf9e4ee0e3b1509f SHA512 f3194148f90d9dbe706c33fefda9cb6db71e0812f83bbf94bb170170bd9d4fcd4eae6295ccc78c6544b093dfbf09512555405dfab5b0516152dce2cb25b18965 WHIRLPOOL d35dd8753565f29b36c55014b8b34f0a5c60fad9f4353d4a094b6a7d2010a9936e9e3e42d27c4d5e6076a861fe7eb424acf86c7847e0218e8877ffb4a9865411
-DIST specView1.0.3.tar.gz 15675662 SHA256 24e88651b1c544db7967d2d650d03f5cf88092a5da7c333ea16d563a32ff57f8 SHA512 2d29121b0dfff6158e9d7a6e9f666eccae655f258720a2d595a21e81241a44c0cf5347acbbca420f70464a21eabd22041a8402fb26a814dacaed9ed90b10e25c WHIRLPOOL ccba371740a8d45a26072c02dfc98d7c0de00071665f745fa19d65c6470eb4edb10fac827519bf6b12c8ff6cb7e39c541f9b7f9aff20cfb83325ca8c8dc93f20
-DIST specView1.0.3r2.tar.gz 15739439 SHA256 0c843fc690cefd347f9845c64c60289965b906d68a9181e944b5ad0831544ba1 SHA512 8795eb643837475bccb611bb3067ee9675a668079fc6c12e3470d6d0c463932afa0499836a5d4728c2c7f582a18ea4c4f7713291fa429758ccbadb432e0671a9 WHIRLPOOL 4b73f2589fb4e7cfc4cc7f4b579355abc301c9def1e644aec621ab45741aceddc1e96bb34066aeb4a7f900b026073bc488f4b015fbfcbb3d38faf3f84ef05e44
-DIST specView1.0.4.tar.gz 16305260 SHA256 f709b1e9a97662023e765b6258939066d5aa7a5b5320dcec76f41ca3982aa1e3 SHA512 8e2653aa7e8c4deb8b53d28928f48c9de99a7cb155771f486ae1c7086e381cde86ac755ceaf510498cad6248d78b901079057e24291198a13d71b3da8a365f75 WHIRLPOOL 028e3a22d5e360f5d198632a6be509d2deaf773bece020a8639fb4ab3b8efa04d0f8a42e60f961f232f95c723822f5aa69562458148069909b2524de43a1a911
diff --git a/sci-chemistry/specView/files/specView b/sci-chemistry/specView/files/specView
deleted file mode 100644
index bca546ca7..000000000
--- a/sci-chemistry/specView/files/specView
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-
-export CCPNMR_TOP_DIR=gentoo_sitedir
-export PYTHONPATH=.:${CCPNMR_TOP_DIR}/specView/python
-export LD_LIBRARY_PATH=gentoolibdir
-export TCL_LIBRARY=gentootcl
-export TK_LIBRARY=gentootk
-export PSIPRED_DIR=gentoousr
-gentoopython -O ${CCPNMR_TOP_DIR}/specView/python/ccpnmr/specView/SpecView.py $@
diff --git a/sci-chemistry/specView/metadata.xml b/sci-chemistry/specView/metadata.xml
deleted file mode 100644
index 8937bad0b..000000000
--- a/sci-chemistry/specView/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-chemistry/specView/specView-1.0.2.ebuild b/sci-chemistry/specView/specView-1.0.2.ebuild
deleted file mode 100644
index 39136056d..000000000
--- a/sci-chemistry/specView/specView-1.0.2.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit multilib python-single-r1 toolchain-funcs
-
-DESCRIPTION="Fast way to visualise NMR spectrum and peak data"
-HOMEPAGE="http://www.ccpn.ac.uk/software/specview"
-SRC_URI="http://www2.ccpn.ac.uk/download/ccpnmr/${PN}${PV}.tar.gz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/pyside[webkit,${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/ccpnmr/ccpnmr3.0/
-
-#TODO:
-#install in sane place
-#unbundle data model
-#unbundle inchi
-#parallel build
-
-src_prepare() {
- sed \
- -e "s|/usr|\"${EPREFIX}/usr\"|g" \
- -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
- -e '/^MALLOC_FLAG/s:^:#:g' \
- -e "/^OPT_FLAG/s:=.*$:= ${CFLAGS}:g" \
- -e "/^LINK_FLAGS/s:$: ${LDFLAGS}:g" \
- -e "/^PYTHON_DIR/s:=.*:= \"${EPREFIX}/usr\":g" \
- -e "/^PYTHON_LIB/s:=.*:= $(python_get_LIBS):g" \
- -e "/^PYTHON_INCLUDE_FLAGS/s:=.*:= -I\"$(python_get_includedir)\" -I\"$(python_get_sitedir)/numpy/core/include/numpy\":g" \
- -e "/^PYTHON_LIB_FLAGS/s:=.*:= -L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^SHARED_FLAGS/s:=.*:= -shared:g" \
- -e "/^GL_DIR/s:=.*:= \"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^GL_INCLUDE_FLAGS/s:=.*:= -I\"${EPREFIX}/usr/include\":g" \
- -e "/^GL_LIB_FLAGS/s:=.*:= -L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- cNg/environment_default.txt > cNg/environment.txt || die
- echo "SHARED_LINK_PARM = ${LDFLAGS}" >> cNg/environment.txt || die
-
- rm -rf license || die
-
- sed \
- -e 's:ln -s:cp -f:g' \
- -i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
- emake -C cNg all
- emake -j1 -C cNg links
-}
-
-src_install() {
- local in_path=$(python_get_sitedir)/${PN}
- local _file
-
- find . -name "*.pyc" -type f -delete
- dodir /usr/bin
- sed \
- -e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
- -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
- -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
- -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
- -e "s|gentoopython|${PYTHON}|g" \
- -e "s|gentoousr|\"${EPREFIX}/usr\"|g" \
- -e "s|//|/|g" \
- "${FILESDIR}"/${PN} > "${ED}"/usr/bin/${PN} || die
- fperms 755 /usr/bin/${PN}
-
- dodir "${in_path#${EPREFIX}}/cNg"
- rm -rf cNg || die
-
- ebegin "Installing main files"
- python_moduleinto ${PN}
- python_domodule *
- eend
- python_optimize
-}
diff --git a/sci-chemistry/specView/specView-1.0.3.ebuild b/sci-chemistry/specView/specView-1.0.3.ebuild
deleted file mode 100644
index 587ff0051..000000000
--- a/sci-chemistry/specView/specView-1.0.3.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit multilib python-single-r1 toolchain-funcs
-
-DESCRIPTION="Fast way to visualise NMR spectrum and peak data"
-HOMEPAGE="http://www.ccpn.ac.uk/software/specview"
-SRC_URI="http://www2.ccpn.ac.uk/download/ccpnmr/${PN}${PV}.tar.gz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/pyside[webkit,${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/ccpnmr/ccpnmr3.0/
-
-#TODO:
-#install in sane place
-#unbundle data model
-#unbundle inchi
-#parallel build
-
-src_prepare() {
- sed \
- -e "s|/usr|\"${EPREFIX}/usr\"|g" \
- -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
- -e '/^MALLOC_FLAG/s:^:#:g' \
- -e "/^OPT_FLAG/s:=.*$:= ${CFLAGS}:g" \
- -e "/^LINK_FLAGS/s:$: ${LDFLAGS}:g" \
- -e "/^PYTHON_DIR/s:=.*:= \"${EPREFIX}/usr\":g" \
- -e "/^PYTHON_LIB/s:=.*:= $(python_get_LIBS):g" \
- -e "/^PYTHON_INCLUDE_FLAGS/s:=.*:= -I\"$(python_get_includedir)\" -I\"$(python_get_sitedir)/numpy/core/include/numpy\":g" \
- -e "/^PYTHON_LIB_FLAGS/s:=.*:= -L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^SHARED_FLAGS/s:=.*:= -shared:g" \
- -e "/^GL_DIR/s:=.*:= \"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^GL_INCLUDE_FLAGS/s:=.*:= -I\"${EPREFIX}/usr/include\":g" \
- -e "/^GL_LIB_FLAGS/s:=.*:= -L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- cNg/environment_default.txt > cNg/environment.txt || die
- echo "SHARED_LINK_PARM = ${LDFLAGS}" >> cNg/environment.txt || die
-
- rm -rf license || die
-
- sed \
- -e 's:ln -s:cp -f:g' \
- -i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
- emake -C cNg all
- emake -j1 -C cNg links
-}
-
-src_install() {
- local in_path=$(python_get_sitedir)/${PN}
- local _file
-
- find . -name "*.pyc" -type f -delete
- dodir /usr/bin
- sed \
- -e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
- -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
- -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
- -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
- -e "s|gentoopython|${PYTHON}|g" \
- -e "s|gentoousr|\"${EPREFIX}/usr\"|g" \
- -e "s|//|/|g" \
- "${FILESDIR}"/${PN} > "${ED}"/usr/bin/${PN} || die
- fperms 755 /usr/bin/${PN}
-
- dodir "${in_path#${EPREFIX}}/cNg"
- rm -rf cNg || die
-
- ebegin "Installing main files"
- python_moduleinto ${PN}
- python_domodule *
- eend
- python_optimize
-}
diff --git a/sci-chemistry/specView/specView-1.0.3_p2.ebuild b/sci-chemistry/specView/specView-1.0.3_p2.ebuild
deleted file mode 100644
index ab85222d6..000000000
--- a/sci-chemistry/specView/specView-1.0.3_p2.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit multilib python-single-r1 toolchain-funcs
-
-DESCRIPTION="Fast way to visualise NMR spectrum and peak data"
-HOMEPAGE="http://www.ccpn.ac.uk/software/specview"
-SRC_URI="http://www2.ccpn.ac.uk/download/ccpnmr/${PN}${PV/_p/r}.tar.gz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/pyside[webkit,${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/ccpnmr/ccpnmr3.0/
-
-#TODO:
-#install in sane place
-#unbundle data model
-#unbundle inchi
-#parallel build
-
-src_prepare() {
- sed \
- -e "s|/usr|\"${EPREFIX}/usr\"|g" \
- -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
- -e '/^MALLOC_FLAG/s:^:#:g' \
- -e "/^OPT_FLAG/s:=.*$:= ${CFLAGS}:g" \
- -e "/^LINK_FLAGS/s:$: ${LDFLAGS}:g" \
- -e "/^PYTHON_DIR/s:=.*:= \"${EPREFIX}/usr\":g" \
- -e "/^PYTHON_LIB/s:=.*:= $(python_get_LIBS):g" \
- -e "/^PYTHON_INCLUDE_FLAGS/s:=.*:= -I\"$(python_get_includedir)\" -I\"$(python_get_sitedir)/numpy/core/include/numpy\":g" \
- -e "/^PYTHON_LIB_FLAGS/s:=.*:= -L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^SHARED_FLAGS/s:=.*:= -shared:g" \
- -e "/^GL_DIR/s:=.*:= \"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^GL_INCLUDE_FLAGS/s:=.*:= -I\"${EPREFIX}/usr/include\":g" \
- -e "/^GL_LIB_FLAGS/s:=.*:= -L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- cNg/environment_default.txt > cNg/environment.txt || die
- echo "SHARED_LINK_PARM = ${LDFLAGS}" >> cNg/environment.txt || die
-
- rm -rf license || die
-
- sed \
- -e 's:ln -s:cp -f:g' \
- -i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
- emake -C cNg all
- emake -j1 -C cNg links
-}
-
-src_install() {
- local in_path=$(python_get_sitedir)/${PN}
- local _file
-
- find . -name "*.pyc" -type f -delete
- dodir /usr/bin
- sed \
- -e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
- -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
- -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
- -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
- -e "s|gentoopython|${PYTHON}|g" \
- -e "s|gentoousr|\"${EPREFIX}/usr\"|g" \
- -e "s|//|/|g" \
- "${FILESDIR}"/${PN} > "${ED}"/usr/bin/${PN} || die
- fperms 755 /usr/bin/${PN}
-
- dodir "${in_path#${EPREFIX}}/cNg"
- rm -rf cNg || die
-
- ebegin "Installing main files"
- python_moduleinto ${PN}
- python_domodule *
- eend
- python_optimize
-}
diff --git a/sci-chemistry/specView/specView-1.0.4.ebuild b/sci-chemistry/specView/specView-1.0.4.ebuild
deleted file mode 100644
index beb71a4df..000000000
--- a/sci-chemistry/specView/specView-1.0.4.ebuild
+++ /dev/null
@@ -1,88 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit flag-o-matic multilib python-single-r1 toolchain-funcs
-
-DESCRIPTION="Fast way to visualise NMR spectrum and peak data"
-HOMEPAGE="http://www.ccpn.ac.uk/software/specview"
-SRC_URI="http://www2.ccpn.ac.uk/download/ccpnmr/${PN}${PV/_p/r}.tar.gz"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/pyside[webkit,${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/ccpnmr/ccpnmr3.0/
-
-#TODO:
-#install in sane place
-#unbundle data model
-#unbundle inchi
-#parallel build
-
-src_prepare() {
- append-cflags -fPIC
- sed \
- -e "s|/usr|\"${EPREFIX}/usr\"|g" \
- -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
- -e '/^MALLOC_FLAG/s:^:#:g' \
- -e "/^OPT_FLAG/s:=.*$:= ${CFLAGS}:g" \
- -e "/^LINK_FLAGS/s:$: ${LDFLAGS}:g" \
- -e "/^PYTHON_DIR/s:=.*:= \"${EPREFIX}/usr\":g" \
- -e "/^PYTHON_LIB/s:=.*:= $(python_get_LIBS):g" \
- -e "/^PYTHON_INCLUDE_FLAGS/s:=.*:= -I\"$(python_get_includedir)\" -I\"$(python_get_sitedir)/numpy/core/include/numpy\":g" \
- -e "/^PYTHON_LIB_FLAGS/s:=.*:= -L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^SHARED_FLAGS/s:=.*:= -shared:g" \
- -e "/^GL_DIR/s:=.*:= \"${EPREFIX}/usr/$(get_libdir)\":g" \
- -e "/^GL_INCLUDE_FLAGS/s:=.*:= -I\"${EPREFIX}/usr/include\":g" \
- -e "/^GL_LIB_FLAGS/s:=.*:= -L\"${EPREFIX}/usr/$(get_libdir)\":g" \
- cNg/environment_default.txt > cNg/environment.txt || die
- echo "SHARED_LINK_PARM = ${LDFLAGS}" >> cNg/environment.txt || die
-
- rm -rf license || die
-
- sed \
- -e 's:ln -s:cp -f:g' \
- -i $(find python -name linkSharedObjs) || die
-}
-
-src_compile() {
- emake -C cNg all
- emake -j1 -C cNg links
-}
-
-src_install() {
- local in_path=$(python_get_sitedir)/${PN}
- local _file
-
- find . -name "*.pyc" -type f -delete
- dodir /usr/bin
- sed \
- -e "s|gentoo_sitedir|$(python_get_sitedir)|g" \
- -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
- -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
- -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
- -e "s|gentoopython|${PYTHON}|g" \
- -e "s|gentoousr|\"${EPREFIX}/usr\"|g" \
- -e "s|//|/|g" \
- "${FILESDIR}"/${PN} > "${ED}"/usr/bin/${PN} || die
- fperms 755 /usr/bin/${PN}
-
- dodir "${in_path#${EPREFIX}}/cNg"
- rm -rf cNg || die
-
- ebegin "Installing main files"
- python_moduleinto ${PN}
- python_domodule *
- eend
- python_optimize
-}