sci-chemistry/oasis -- Initial commit

Written by me
fixes bug 290588
(Portage version: 2.2_rc50/git/Linux x86_64)
 (Signed Manifest commit)

5 files changed, 113 insertions, 0 deletions

diff --git a/sci-chemistry/oasis/ChangeLog b/sci-chemistry/oasis/ChangeLog
new file mode 100644
index 000000000..16027d0ea
--- /dev/null
+++ b/sci-chemistry/oasis/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-chemistry/oasis
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*oasis-4.0 (16 Nov 2009)
+
+  16 Nov 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+  +files/4.0-makefile.patch, +oasis-4.0.ebuild, +metadata.xml:
+  Initial commit
+  Written by me
+
diff --git a/sci-chemistry/oasis/Manifest b/sci-chemistry/oasis/Manifest
new file mode 100644
index 000000000..ee973fc25
--- /dev/null
+++ b/sci-chemistry/oasis/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX 4.0-makefile.patch 1277 RMD160 8c5a9c6feec0bbb1e80f4a1a48fd016ffc3ad77f SHA1 6d0a3503f650cafe67d5d5b1a7c0561de20c90b5 SHA256 4bafff2ae7e58a908d7203e56643122f56c0cc0ebca8a103f2ca73fefa5986ce
+DIST oasis4.0_Linux.zip 6714528 RMD160 9d5b46e06ab6b2e7e301622978056bf7b4208a79 SHA1 fab2e4556ad04556f918bae153e13a843415f0c9 SHA256 56da70ce0c2750aaddf64ad2cd7852fc341d2022209484beb356b4e73dec61ba
+EBUILD oasis-4.0.ebuild 1245 RMD160 5686423e03594366ad6b19eee17ae683a6a7b8e2 SHA1 9f01f0aaafc9b88402ec63d1d951c0673f8af4f0 SHA256 2b6f4611a84f15e483c015513f8f39f65bc7ece48f82e7dfbcf31c2f2747e5b2
+MISC ChangeLog 300 RMD160 0d25429065dacd6d720e5338ed2f503b0eb786aa SHA1 e167cd1adc7fa11c8c044eac92cd190c6b0ed88e SHA256 9bac608c0d875c2b0d066d7ba99f44b7db1f658db4243328aead351accf61acb
+MISC metadata.xml 215 RMD160 bc9c07aa91f2f175542244e4e4522a73558210a1 SHA1 facb283386de1c0b6b938cdcd4dde04d1694298b SHA256 13f32353652adbd3d934d41381cfc2cacc9e1127c508cebc73806cc1026ee80c
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.11 (GNU/Linux)
+
+iEYEARECAAYFAksBwWkACgkQgAnW8HDreRZ2GACfSgGPlHFxyp/xbc18ZXkRj1at
+NMcAnR82wnC9lmxorRpb2kfeBbnQUPPz
+=MTBJ
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/oasis/files/4.0-makefile.patch b/sci-chemistry/oasis/files/4.0-makefile.patch
new file mode 100644
index 000000000..f27a350a1
--- /dev/null
+++ b/sci-chemistry/oasis/files/4.0-makefile.patch
@@ -0,0 +1,15 @@
+diff --git a/src/Makefile b/src/Makefile
+index 1e9128f..eb9edaf 100644
+--- a/src/Makefile
++++ b/src/Makefile
+@@ -20,8 +20,8 @@ IRIX:
+ 	@ ${F77} -O2 -mips3 -nocpp -OPT:Olimit=1500 -w -rpath ${CCP4_LIB} -o oasis4-0 oasis4-0.f -L${CCP4_LIB}/src -lccp4f -lccp4c -lmmdb -lC -lm -L/usr/lib32 -lblas
+ 	@ ${F77} -O2 -mips3 -nocpp -OPT:Olimit=1500 -w -rpath ${CCP4_LIB} -o fnp2fp fnp2fp.f -L${CCP4_LIB}/src -lccp4f -lccp4c -lmmdb -lC -lm -L/usr/lib32 -lblas
+ Linux:
+-	@ ${F77} -O -w -fno-second-underscore -fno-globals -fno-automatic -o oasis4-0 oasis4-0.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lg2c -lm -L${CCP4_LIB}
+-	@ ${F77} -O -w -fno-second-underscore -fno-globals -fno-automatic -o fnp2fp fnp2fp.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lg2c -lm -L${CCP4_LIB}
++	${F77} $(CFLAGS) $(LDFLAGS) -o oasis oasis4-0.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lm -L${CCP4_LIB}
++	${F77} $(CFLAGS) $(LDFLAGS) -o fnp2fp fnp2fp.f -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lm -L${CCP4_LIB}
+ Darwin:
+ 	@ ${F77} -O2 -fno-second-underscore -o fnp2fp fnp2fp.f   -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lgcc_s.10.5 -lSystem -lm
+ 	@ ${F77} -O2 -fno-second-underscore -o oasis4-0 oasis4-0.f   -L${CCP4_LIB} -lccp4f -lccp4c -lmmdb -lstdc++ -lgcc_s.10.5 -lSystem -lm
diff --git a/sci-chemistry/oasis/metadata.xml b/sci-chemistry/oasis/metadata.xml
new file mode 100644
index 000000000..efb490d78
--- /dev/null
+++ b/sci-chemistry/oasis/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>sci@gentoo.org</email>
+</maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/oasis/oasis-4.0.ebuild b/sci-chemistry/oasis/oasis-4.0.ebuild
new file mode 100644
index 000000000..a0b0e78e3
--- /dev/null
+++ b/sci-chemistry/oasis/oasis-4.0.ebuild
@@ -0,0 +1,64 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI="2"
+
+inherit eutils toolchain-funcs
+
+MY_P="${PN}${PV}_Linux"
+
+DESCRIPTION="A direct-method program for SAD/SIR phasing"
+HOMEPAGE="http://cryst.iphy.ac.cn/Project/protein/protein-I.html"
+SRC_URI="http://dev.gentooexperimental.org/~jlec/distfiles/${MY_P}.zip"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+LICENSE="ccp4 oasis"
+IUSE="examples"
+
+RDEPEND="
+	sci-chemistry/arp-warp-bin
+	sci-chemistry/ccp4[oasis4]
+	sci-chemistry/pymol
+	sci-chemistry/solve-resolve-bin
+	sci-visualization/gnuplot"
+DEPEND="
+	sci-libs/ccp4-libs
+	sci-libs/mmdb"
+
+S="${WORKDIR}"/${MY_P}
+
+src_prepare() {
+	rm bin/{fnp2fp,gnuplot,oasis4-0,seq} || die
+	epatch "${FILESDIR}"/${PV}-makefile.patch
+}
+
+src_compile() {
+	emake \
+		-C src \
+		F77="$(tc-getFC)" \
+		CCP4_LIB="/usr/$(get_libdir)" \
+		Linux || die
+}
+
+src_install() {
+	dobin src/{${PN},fnp2fp} || die
+
+	exeinto /usr/$(get_libdir)/${PN}
+	doexe bin/*.*sh || die
+
+	exeinto /usr/$(get_libdir)/${PN}/html
+	doexe bin/html/* || die
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r examples || die
+	fi
+
+	cat >> "${T}"/25oasis <<- EOF
+	oasisbin="/usr/$(get_libdir)/${PN}"
+	EOF
+
+	doenvd "${T}"/25oasis
+}