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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-12-30 16:20:32 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-12-30 16:20:32 +0100 |
| commit | 08a272766f1feb9206762a4c51839c55a9c7637d (patch) | |
| tree | 42addb7c18cefac81f01407823cb11d3c3755511 /sci-libs/libmaus2 | |
| parent | sci-libs/libmaus2: update the ebuild for gitlab.com site (diff) | |
| download | sci-08a272766f1feb9206762a4c51839c55a9c7637d.tar.gz sci-08a272766f1feb9206762a4c51839c55a9c7637d.tar.bz2 sci-08a272766f1feb9206762a4c51839c55a9c7637d.zip | |
sci-libs/libmaus2: version bump to 2.0.689
Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Diffstat (limited to 'sci-libs/libmaus2')
| -rw-r--r-- | sci-libs/libmaus2/Manifest | 1 | ||||
| -rw-r--r-- | sci-libs/libmaus2/libmaus2-2.0.689.ebuild | 45 |
2 files changed, 46 insertions, 0 deletions
diff --git a/sci-libs/libmaus2/Manifest b/sci-libs/libmaus2/Manifest index b1dff8dc9..7cb51d3bb 100644 --- a/sci-libs/libmaus2/Manifest +++ b/sci-libs/libmaus2/Manifest @@ -1 +1,2 @@ DIST libmaus2-2.0.587.tar.gz 3673092 BLAKE2B 94c56fa4141a0e7f5f9f60ceb57d1b73252c05397bf0914eb15ce73d4fb7cb37e053f1de12cd2d93f5d50280ce46718bc02223c4b97fad70f2d172bdf7101712 SHA512 8e1e3046c6b9b2abf013fa16d7eab6173d32dc31c4f429f8161df2da0a41c972beb3fdffe85091429d6f6920ddafeb4e84e1626dc56f8fec6ef1d76742385572 +DIST libmaus2-2.0.689.tar.gz 3479996 BLAKE2B 30aa0b43ba247e7724d1d8120a13a040f168d5eef1cd74d00a0ff5daa29f05d8991afddbfab8ab2dee0c0040f6c90331f12180a5ee26ab08b92581d63311a55b SHA512 8aedc71b29e8852b46f0eda4bcedbf746c1fbc7685fd96db91f7a66c77521c8af4f98a47ccf0f00672795b8573033bd2cd612cd4c188ed4354024ef717869b79 diff --git a/sci-libs/libmaus2/libmaus2-2.0.689.ebuild b/sci-libs/libmaus2/libmaus2-2.0.689.ebuild new file mode 100644 index 000000000..50b82d5aa --- /dev/null +++ b/sci-libs/libmaus2/libmaus2-2.0.689.ebuild @@ -0,0 +1,45 @@ +# Copyright 2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools + +release_data="20191120141844" +DESCRIPTION="Library for biobambam2" +HOMEPAGE="https://github.com/gt1/libmaus" +SRC_URI="https://gitlab.com/german.tischler/${PN}/-/archive/${PV}-release-${release_data}/${P}-release-${release_data}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" + +DEPEND=" + !sci-libs/libmaus + >=sci-libs/io_lib-1.14.11 + app-arch/snappy + sci-libs/fftw + sci-libs/hdf5 + net-libs/gnutls + dev-libs/nettle" +# --with-daligner +# --with-irods +# old github.com release tarballs +# S="${WORKDIR}"/libmaus2-master-27828cd78121d5e4b19c263c5527e462360f5901 +# current gitlab.com release tarballs +S="${WORKDIR}/${P}-release-${release_data}" + +src_configure(){ + local CONFIG_OPTS + use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) + ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) + econf --with-snappy --with-io_lib $CONFIG_OPTS \ + --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw +} + +pkg_postinst(){ + einfo "The io_lib, snappy dependencies are not strictly needed" + einfo "but were forced for optimal libmaus2 performance." + einfo "igzip is only used if gzip level is set to 11." +} |