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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2016-07-14 20:42:06 +0200
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2016-07-14 20:42:06 +0200
commitec639407519c52105c86906c2909ecbeb3a25665 (patch)
tree6c4da977278c6a33a4e7ac9474982bfec33b955f /sci-libs/libmaus2
parentsci-libs/votca-tools: moved to gx86 (diff)
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sci-libs/libmaus2: new package although a version bump of sci-libs/libmaus
I think this and the parental libmaus package will need a fix on the LICENSE line (they are not only GPL-v3). Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-libs/libmaus2')
-rw-r--r--sci-libs/libmaus2/libmaus2-9999.ebuild27
-rw-r--r--sci-libs/libmaus2/metadata.xml20
2 files changed, 47 insertions, 0 deletions
diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild
new file mode 100644
index 000000000..ae02d151e
--- /dev/null
+++ b/sci-libs/libmaus2/libmaus2-9999.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools git-r3
+
+DESCRIPTION="Library for biobambam"
+HOMEPAGE="https://github.com/gt1/libmaus"
+EGIT_REPO_URI="https://github.com/gt1/libmaus2.git"
+
+LICENSE="GPL-3" # BUG: a mix of licenses, see AUTHORS
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+ !sci-libs/libmaus
+ sci-libs/io_lib
+ app-arch/snappy
+ sci-biology/seqan"
+
+src_prepare() {
+ eautoreconf
+ eapply_user
+}
diff --git a/sci-libs/libmaus2/metadata.xml b/sci-libs/libmaus2/metadata.xml
new file mode 100644
index 000000000..1541e62b3
--- /dev/null
+++ b/sci-libs/libmaus2/metadata.xml
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+ <longdescription lang="en">
+libmaus is a collection of data structures and algorithms. It contains
+
+I/O classes (single byte and UTF-8)
+ bitio classes (input, output and various forms of bit level manipulation)
+ text indexing classes (suffix and LCP array, fulltext and minute (FM), ...)
+ BAM sequence alignment files input/output (simple and collating)
+ and many lower level support classes.
+</longdescription>
+ <upstream>
+ <remote-id type="github">gt1/libmaus</remote-id>
+ </upstream>
+</pkgmetadata>