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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-12-14 12:40:50 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-12-14 12:40:50 +0100 |
| commit | 4fdad4d5229ce714a6a2c7e91338be89c14e7fc4 (patch) | |
| tree | 0e43d4cf4526e07d319586808d2fa2f356807b4f /sci-libs | |
| parent | sci-biology/zmap: add einfo mentioning seqtools package (diff) | |
| download | sci-4fdad4d5229ce714a6a2c7e91338be89c14e7fc4.tar.gz sci-4fdad4d5229ce714a6a2c7e91338be89c14e7fc4.tar.bz2 sci-4fdad4d5229ce714a6a2c7e91338be89c14e7fc4.zip | |
sci-libs/libmaus2: bring in a release, add more LICENSEs
The list of licenses is still incomplete and somebody more
comfortable with interpretation of them inside *.asm and other
files needs to poke over this before unmasking. See AUTHORS
file for their listing.
Package-Manager: Portage-2.3.52, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Diffstat (limited to 'sci-libs')
| -rw-r--r-- | sci-libs/libmaus2/Manifest | 1 | ||||
| -rw-r--r-- | sci-libs/libmaus2/libmaus2-2.0.499.ebuild | 42 | ||||
| -rw-r--r-- | sci-libs/libmaus2/libmaus2-9999.ebuild | 6 |
3 files changed, 46 insertions, 3 deletions
diff --git a/sci-libs/libmaus2/Manifest b/sci-libs/libmaus2/Manifest new file mode 100644 index 000000000..51c8ba1af --- /dev/null +++ b/sci-libs/libmaus2/Manifest @@ -0,0 +1 @@ +DIST 2.0.499-release-20180606122508.tar.gz 3610083 BLAKE2B 6495ba6eff89331544bb8999728cca0d86eba6dc0b9cf65aad298b0153f3d7d9c521b8eee6351972f10db0ae1de5ec554d4c149f57b9e3c31a376297d2fb0594 SHA512 b8ce37f0d2dc74bca2ee175c533338d86a60cff26219c9f7f050448fc544980e7ed4b7cefa17fb67fb0f42c8b11cae8d832f37bb2afa23379a7ce2e229d4f990 diff --git a/sci-libs/libmaus2/libmaus2-2.0.499.ebuild b/sci-libs/libmaus2/libmaus2-2.0.499.ebuild new file mode 100644 index 000000000..cebe44161 --- /dev/null +++ b/sci-libs/libmaus2/libmaus2-2.0.499.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2018 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools + +DESCRIPTION="Library for biobambam2" +HOMEPAGE="https://github.com/gt1/libmaus" +SRC_URI="https://github.com/gt1/libmaus2/archive/2.0.499-release-20180606122508.tar.gz" + +LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS +SLOT="0" +KEYWORDS="" +IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" + +DEPEND=" + !sci-libs/libmaus + sci-libs/io_lib + app-arch/snappy + sci-biology/seqan + sci-libs/fftw + sci-libs/hdf5 + net-libs/gnutls + dev-libs/nettle" +# --with-daligner +# --with-irods +S="${WORKDIR}"/libmaus2-2.0.499-release-20180606122508 + +src_configure(){ + local CONFIG_OPTS + use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) + ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) + econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \ + --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw +} + +pkg_postinst(){ + einfo "The io_lib, snappy and seqan dependencies are not strictly needed" + einfo "but were forced for optimal libmaus2 performance." + einfo "igzip is only used if gzip level is set to 11." +} diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild index d68a5d0e0..01aa74a92 100644 --- a/sci-libs/libmaus2/libmaus2-9999.ebuild +++ b/sci-libs/libmaus2/libmaus2-9999.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 inherit autotools git-r3 @@ -9,7 +9,7 @@ DESCRIPTION="Library for biobambam2" HOMEPAGE="https://github.com/gt1/libmaus" EGIT_REPO_URI="https://github.com/gt1/libmaus2.git" -LICENSE="GPL-3" # BUG: a mix of licenses, see AUTHORS +LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS SLOT="0" KEYWORDS="" IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" |