moved overlay to new directory

git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@979 32389bae-6d03-0410-99cf-db05cde120eb

6 files changed, 301 insertions, 0 deletions

diff --git a/sci-mathematics/freefem++/ChangeLog b/sci-mathematics/freefem++/ChangeLog
new file mode 100644
index 000000000..cddb64a42
--- /dev/null
+++ b/sci-mathematics/freefem++/ChangeLog
@@ -0,0 +1,27 @@
+# ChangeLog for sci-mathematics/freefem++
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+	
+*freefem++-2.23.2 (08 Feb 2008)
+	
+  08 Feb 2008; Sébastien Fabbro <bicatali@gentoo.org>
+  -freefem++-2.22.ebuild, +freefem++-2.23.2.ebuild:
+  Version bump.
+
+*freefem++-2.23.1 (30 Jan 2008)
+	
+  30 Jan 2008; Sébastien Fabbro <bicatali@gentoo.org>
+  +freefem++-2.23.1.ebuild:
+  Version bump
+
+*freefem++-2.22 (27 Dec 2007)
+	
+  27 Dec 2007; Sébastien Fabbro <bicatali@gentoo.org>
+  -freefem++-2.21.1.ebuild, +freefem++-2.22.ebuild:
+  Version bump
+
+*freefem++-2.21.1 (22 Nov 2007)
+	
+  22 Nov 2007; Sébastien Fabbro <bicatali@gentoo.org>
+  +files/freefem++-acoptim.patch, +metadata.xml, +freefem++-2.21.1.ebuild:
+  Initial import. Ebuild submitted by David Radice. See bug #34498.
diff --git a/sci-mathematics/freefem++/Manifest b/sci-mathematics/freefem++/Manifest
new file mode 100644
index 000000000..8b4459681
--- /dev/null
+++ b/sci-mathematics/freefem++/Manifest
@@ -0,0 +1,7 @@
+AUX freefem++-acoptim.patch 663 RMD160 6294d436eaf8bdea7258b3ca704e5ff9f942f019 SHA1 0ebe27e991bdd3949d3bf671056a15ce23f4f29f SHA256 6d07f4cd1a061d401879e54568fbeb2a035951b50195dfd3b88b05086a87cbb7
+DIST freefem++-2.23-1.tar.gz 10966918 RMD160 9587024168a251424a3bfd26549e65a4ea433a9b SHA1 8b116f480c9998e13e09685dbc1809907525a874 SHA256 d75a976e538f3fcf835a8e3029acc88d43a88213a99742fc95d2c791843e9e7b
+DIST freefem++-2.23-2.tar.gz 10966822 RMD160 07a4beb1da5b7f2366c5e3434b29ebb201291884 SHA1 5de2601e8f5cbed8e3c324e60c5043003b368984 SHA256 761c3c4cd62ef4d125f05b87e7e4e0c37bb324e61a3200e2f3979a123a3bd7c5
+EBUILD freefem++-2.23.1.ebuild 3053 RMD160 52c96b44e20059e18da9dde2b9ed0b86e23de5d9 SHA1 52bf87e581548a647ccdba1ae985382cef1a6641 SHA256 fcafdd70a40036f0f8cdd1348fa5f2e5284df8c0626f05e0d4b4d63ce3baca00
+EBUILD freefem++-2.23.2.ebuild 3053 RMD160 52c96b44e20059e18da9dde2b9ed0b86e23de5d9 SHA1 52bf87e581548a647ccdba1ae985382cef1a6641 SHA256 fcafdd70a40036f0f8cdd1348fa5f2e5284df8c0626f05e0d4b4d63ce3baca00
+MISC ChangeLog 805 RMD160 b9a1c4f4c57204e23779d64a24b74a4b5bab5eb6 SHA1 d97d87d77e19edc7c4a1a46b0eb3f94eaab43e8d SHA256 8866eed7162ae46341a7ba8a2a8ce847f460dce71b1fc6817cdf57f1de1a3eaf
+MISC metadata.xml 381 RMD160 17dca0ed77bf65c0d2d8aa2148243f67c4a05edf SHA1 f583b125502b06a151f200849e2892bd08dbc70e SHA256 d7569d977d779a55533651e01e4d45e5ae7a1ada36b634e8b988ae4db86cdb83
diff --git a/sci-mathematics/freefem++/files/freefem++-acoptim.patch b/sci-mathematics/freefem++/files/freefem++-acoptim.patch
new file mode 100644
index 000000000..087b077cb
--- /dev/null
+++ b/sci-mathematics/freefem++/files/freefem++-acoptim.patch
@@ -0,0 +1,17 @@
+--- freefem++-2.20-1/acoptim.m4	2006-01-27 16:51:16.000000000 +0100
++++ freefem++-2.20-1.new/acoptim.m4	2007-11-14 18:50:37.000000000 +0100
+@@ -16,14 +16,6 @@
+ AC_ARG_ENABLE(debug,[  --enable-debug	Turn on debug versions of FreeFem++])
+ AC_ARG_ENABLE(optim,[  --enable-optim	Turn on compiler optimization])
+ 
+-# Autoconf always chooses -O2. -O2 in gcc makes some functions
+-# disappear. This is not ideal for debugging. And when we optimize, we
+-# do not use -O2 anyway.
+-
+-CFLAGS="`echo $CFLAGS | sed 's/-O2//g'`"
+-FFLAGS="`echo $FFLAGS | sed 's/-O2//g'`"
+-CXXFLAGS="`echo $CXXFLAGS | sed 's/-O2//g'`"
+-
+ if test "$enable_debug" = yes;
+ then
+ 	AC_MSG_RESULT(yes)
\ No newline at end of file
diff --git a/sci-mathematics/freefem++/freefem++-2.23.1.ebuild b/sci-mathematics/freefem++/freefem++-2.23.1.ebuild
new file mode 100644
index 000000000..ded259731
--- /dev/null
+++ b/sci-mathematics/freefem++/freefem++-2.23.1.ebuild
@@ -0,0 +1,120 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit eutils autotools versionator flag-o-matic
+
+MY_PV=$(replace_version_separator 2 '-')
+
+DESCRIPTION="Solve PDEs using FEM on 2d domains"
+HOMEPAGE="http://www.freefem.org/ff++/"
+SRC_URI="http://www.freefem.org/ff%2B%2B/ftp/${PN}-${MY_PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc examples fltk mpi X"
+
+RDEPEND="sci-libs/fftw
+	virtual/cblas
+	virtual/lapack
+	sci-libs/umfpack
+	>=sci-libs/arpack-96-r2
+	X? (
+		x11-libs/libXpm
+		fltk? ( x11-libs/fltk )
+		)
+	mpi? ( virtual/mpi )"
+
+DEPEND="${RDEPEND}
+	dev-util/pkgconfig
+	doc? ( virtual/latex-base media-gfx/imagemagick )"
+
+S="${WORKDIR}/${PN}-${MY_PV}"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	# acoptim.m4 forced -O2 removal
+	epatch "${FILESDIR}"/${PN}-acoptim.patch
+	eautoreconf
+}
+
+src_compile() {
+	local myconf
+
+	# Tested using mpich2, upstream built freefem++ with mpich and lam-mpi.
+	# So it should work, at least with this three MPI implementations.
+	if use mpi; then
+		if has_version sys-cluster/mpich2 ; then
+			myconf="${myconf} --with-mpi=mpicxx"
+		else
+			myconf="${myconf} --with-mpi=mpiCC"
+		fi
+	else
+		myconf="--without-mpi"
+	fi
+
+	use fltk && append-cppflags $(fltk-config --cflags)
+
+	econf \
+		--disable-download \
+		--disable-optim \
+		--enable-generic \
+		--with-blas="$(pkg-config --libs blas)" \
+		--with-lapack="$(pkg-config --libs lapack)" \
+		$(use_with fltk) \
+		$(use_with X x) \
+		${myconf} \
+		|| die "econf failed"
+
+	emake || die "emake failed"
+
+	if use doc; then
+		emake documentation || die "emake documentation failed"
+	fi
+}
+
+src_test() {
+	# This may depend on the used MPI implementation. It is needed
+	# with mpich2, but should not be needed with lam-mpi or mpich
+	# (if the system is configured correctly).
+	ewarn "Please check that your MPI root ring is on before running"
+	ewarn "the test phase. Failing to start it before that phase may"
+	ewarn "result in a failing emerge."
+	epause
+	emake -j1 check || die "check test failed"
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "emake install failed"
+
+	if use fltk; then
+		einfo "\"FreeFem++-ide\" is not intended for user use."
+		einfo "Use the \"FreeFem++-cs\" command to access the IDE."
+		einfo
+	fi
+
+	insinto /usr/share/doc/${PF}
+	if use doc; then
+		doins DOC/freefem++doc.pdf || die
+	fi
+
+	if use examples; then
+		einfo "Installing examples..."
+
+		# Remove compiled examples:
+		emake clean || die "emake clean failed"
+
+		einfo "Some of the installed examples assumes that the user has write"
+		einfo "permissions in the working directory and other will look for"
+		einfo "data files in the working directory. For this reason in order to"
+		einfo "run the examples it's better to temporary copy them somewhere"
+		einfo "in the user folder. For example to run the tutorial examples"
+		einfo "it's better to copy the entire examples++-tutorial folder into"
+		einfo "the user directory."
+		doins regtests.sh
+		rm -f examples*/Makefile*
+		doins -r examples*
+	fi
+}
diff --git a/sci-mathematics/freefem++/freefem++-2.23.2.ebuild b/sci-mathematics/freefem++/freefem++-2.23.2.ebuild
new file mode 100644
index 000000000..ded259731
--- /dev/null
+++ b/sci-mathematics/freefem++/freefem++-2.23.2.ebuild
@@ -0,0 +1,120 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit eutils autotools versionator flag-o-matic
+
+MY_PV=$(replace_version_separator 2 '-')
+
+DESCRIPTION="Solve PDEs using FEM on 2d domains"
+HOMEPAGE="http://www.freefem.org/ff++/"
+SRC_URI="http://www.freefem.org/ff%2B%2B/ftp/${PN}-${MY_PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc examples fltk mpi X"
+
+RDEPEND="sci-libs/fftw
+	virtual/cblas
+	virtual/lapack
+	sci-libs/umfpack
+	>=sci-libs/arpack-96-r2
+	X? (
+		x11-libs/libXpm
+		fltk? ( x11-libs/fltk )
+		)
+	mpi? ( virtual/mpi )"
+
+DEPEND="${RDEPEND}
+	dev-util/pkgconfig
+	doc? ( virtual/latex-base media-gfx/imagemagick )"
+
+S="${WORKDIR}/${PN}-${MY_PV}"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	# acoptim.m4 forced -O2 removal
+	epatch "${FILESDIR}"/${PN}-acoptim.patch
+	eautoreconf
+}
+
+src_compile() {
+	local myconf
+
+	# Tested using mpich2, upstream built freefem++ with mpich and lam-mpi.
+	# So it should work, at least with this three MPI implementations.
+	if use mpi; then
+		if has_version sys-cluster/mpich2 ; then
+			myconf="${myconf} --with-mpi=mpicxx"
+		else
+			myconf="${myconf} --with-mpi=mpiCC"
+		fi
+	else
+		myconf="--without-mpi"
+	fi
+
+	use fltk && append-cppflags $(fltk-config --cflags)
+
+	econf \
+		--disable-download \
+		--disable-optim \
+		--enable-generic \
+		--with-blas="$(pkg-config --libs blas)" \
+		--with-lapack="$(pkg-config --libs lapack)" \
+		$(use_with fltk) \
+		$(use_with X x) \
+		${myconf} \
+		|| die "econf failed"
+
+	emake || die "emake failed"
+
+	if use doc; then
+		emake documentation || die "emake documentation failed"
+	fi
+}
+
+src_test() {
+	# This may depend on the used MPI implementation. It is needed
+	# with mpich2, but should not be needed with lam-mpi or mpich
+	# (if the system is configured correctly).
+	ewarn "Please check that your MPI root ring is on before running"
+	ewarn "the test phase. Failing to start it before that phase may"
+	ewarn "result in a failing emerge."
+	epause
+	emake -j1 check || die "check test failed"
+}
+
+src_install() {
+	emake DESTDIR="${D}" install || die "emake install failed"
+
+	if use fltk; then
+		einfo "\"FreeFem++-ide\" is not intended for user use."
+		einfo "Use the \"FreeFem++-cs\" command to access the IDE."
+		einfo
+	fi
+
+	insinto /usr/share/doc/${PF}
+	if use doc; then
+		doins DOC/freefem++doc.pdf || die
+	fi
+
+	if use examples; then
+		einfo "Installing examples..."
+
+		# Remove compiled examples:
+		emake clean || die "emake clean failed"
+
+		einfo "Some of the installed examples assumes that the user has write"
+		einfo "permissions in the working directory and other will look for"
+		einfo "data files in the working directory. For this reason in order to"
+		einfo "run the examples it's better to temporary copy them somewhere"
+		einfo "in the user folder. For example to run the tutorial examples"
+		einfo "it's better to copy the entire examples++-tutorial folder into"
+		einfo "the user directory."
+		doins regtests.sh
+		rm -f examples*/Makefile*
+		doins -r examples*
+	fi
+}
diff --git a/sci-mathematics/freefem++/metadata.xml b/sci-mathematics/freefem++/metadata.xml
new file mode 100644
index 000000000..a405992e2
--- /dev/null
+++ b/sci-mathematics/freefem++/metadata.xml
@@ -0,0 +1,10 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-mathematics</herd>
+<longdescription lang="en">
+    FreeFem++ is an implementation of a language dedicated to the finite
+    element method. It enables you to solve Partial Differential Equations
+    (PDE) easily.
+</longdescription>
+</pkgmetadata>