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authorbicatali <bicatali@32389bae-6d03-0410-99cf-db05cde120eb>2008-03-17 16:21:32 +0000
committerbicatali <bicatali@32389bae-6d03-0410-99cf-db05cde120eb>2008-03-17 16:21:32 +0000
commit76ffb781ed7a917f23b67454e9f950e5e3b83527 (patch)
tree94fa8e1ddc7cb9ef80b78ea7896a5845f074f95b /sci-mathematics/octave
parentmove stuff to root (diff)
downloadsci-76ffb781ed7a917f23b67454e9f950e5e3b83527.tar.gz
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moved overlay to new directory
git-svn-id: http://overlays.gentoo.org/svn/proj/science/overlay@979 32389bae-6d03-0410-99cf-db05cde120eb
Diffstat (limited to 'sci-mathematics/octave')
-rw-r--r--sci-mathematics/octave/ChangeLog22
-rw-r--r--sci-mathematics/octave/Manifest6
-rw-r--r--sci-mathematics/octave/files/octave-2.9.18-test-fix.patch28
-rw-r--r--sci-mathematics/octave/octave-2.9.19.ebuild124
-rw-r--r--sci-mathematics/octave/octave-3.0.0.ebuild141
5 files changed, 321 insertions, 0 deletions
diff --git a/sci-mathematics/octave/ChangeLog b/sci-mathematics/octave/ChangeLog
new file mode 100644
index 000000000..3fe1b9a60
--- /dev/null
+++ b/sci-mathematics/octave/ChangeLog
@@ -0,0 +1,22 @@
+# ChangeLog for sci-mathematics/octave-forge-parallel
+# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 30 Dec 2007; Markus Dittrich <markusle@gentoo.org> +octave-3.0.0.ebuild:
+ Version bump.
+
+ 14 Dec 2007; Markus Dittrich <markusle@gentoo.org> +octave-2.9.19.ebuild:
+ Version bump.
+
+ 14 Dec 2007; Markus Dittrich <markusle@gentoo.org> octave-2.9.18.ebuild:
+ Switched SRC_URI to main gnu mirror.
+
+ 07 Dec 2007; Markus Dittrich <markusle@gentoo.org>
+ -files/octave-2.9.12-test-fix.patch, -files/octave-2.9.14-test-fix.patch,
+ +files/octave-2.9.18-test-fix.patch, -octave-2.9.14.ebuild,
+ -octave-2.9.15.ebuild, +octave-2.9.18.ebuild:
+ Version bump.
+
+ 20 Oct 2007; Markus Dittrich <markusle@gentoo.org> ChangeLog:
+ Initial import.
+
diff --git a/sci-mathematics/octave/Manifest b/sci-mathematics/octave/Manifest
new file mode 100644
index 000000000..b211464e8
--- /dev/null
+++ b/sci-mathematics/octave/Manifest
@@ -0,0 +1,6 @@
+AUX octave-2.9.18-test-fix.patch 1241 RMD160 1cac3e4cd2cce480a184a8319ce0cb2d34503b2c SHA1 87905a77f3b9f63b56bd8c4ee8ae12e3a3c2ee4a SHA256 f72d643e3b9e143005dd450bb25a15ae87a41a0dcbbc34f3cced6da0f9980a3b
+DIST octave-2.9.19.tar.bz2 9807420 RMD160 c0f7d7b384f3e2f51cdb7ee0360d4ddf52e4493a SHA1 1cee64ccbcce0aca2b771175fcfbca817c9ba705 SHA256 684165a4b7f45e02761dded6ecf50d57652d55beb2295cdac3b7518ec6dc02d8
+DIST octave-3.0.0.tar.bz2 9821575 RMD160 02fc58b63210ec99cfcad9dc2cee2ad1b6d11326 SHA1 874b3d40db5d882e37614ffa6cdb9fdd71e173f8 SHA256 f2351eed4f6505993275947802a35ecbc9b7e587ebbb5ee7ba72d54280de4418
+EBUILD octave-2.9.19.ebuild 3730 RMD160 83bede43b38adeeb947a73eab8b1a72dfd2b423c SHA1 91e0f8ca90ce245fe008f0fe1b4c19f31c6c731b SHA256 b9ed09502561add7639a7b0494b3f101583ad4cfe49f1d818d3342c39be4d42b
+EBUILD octave-3.0.0.ebuild 4106 RMD160 650326ed81123a3feb1ad4fb1ff6355650e5aa55 SHA1 6fd0586593804c6f1610ea86e9e3e8e5a63c90b5 SHA256 b48d5c15c9a6518abc7861d1353210f783974fe5a2fca79eab408c6b607068a1
+MISC ChangeLog 777 RMD160 056cd970774fa495ed02dceaef76466083f4da8c SHA1 092325e7257dfd667be8477a9184f26959287ed4 SHA256 e421e73a1d2c0f399523afb40df25ac9f72c8c526041e91a2e5c73cde6cd545f
diff --git a/sci-mathematics/octave/files/octave-2.9.18-test-fix.patch b/sci-mathematics/octave/files/octave-2.9.18-test-fix.patch
new file mode 100644
index 000000000..a575de886
--- /dev/null
+++ b/sci-mathematics/octave/files/octave-2.9.18-test-fix.patch
@@ -0,0 +1,28 @@
+diff -Naur octave-2.9.18/scripts/general/interpft.m octave-2.9.18.new/scripts/general/interpft.m
+--- octave-2.9.18/scripts/general/interpft.m 2007-10-12 17:27:21.000000000 -0400
++++ octave-2.9.18.new/scripts/general/interpft.m 2007-12-07 17:19:57.000000000 -0500
+@@ -108,7 +108,6 @@
+ %! x = [0:10]'; y = sin(x); n = length (x);
+ %!assert (interpft(y, n), y, eps);
+ %!assert (interpft(y', n), y', eps);
+-%!assert (interpft([y,y],n), [y,y], eps);
+
+ %!error (interpft(y,n,0))
+ %!error (interpft(y,[n,n]))
+diff -Naur octave-2.9.18/test/test_system.m octave-2.9.18.new/test/test_system.m
+--- octave-2.9.18/test/test_system.m 2007-10-12 17:27:37.000000000 -0400
++++ octave-2.9.18.new/test/test_system.m 2007-12-07 17:25:15.000000000 -0500
+@@ -376,13 +376,6 @@
+ %% test/octave.test/system/file_in_path-4.m
+ %!error <Invalid call to file_in_path.*> file_in_path ("foo", "bar", "baz", "ooka");
+
+-%% test/octave.test/system/tilde_expand-1.m
+-%!test
+-%! x = getpwuid (getuid ());
+-%! assert((strcmp (x.dir, tilde_expand ("~"))
+-%! && strcmp (x.dir, tilde_expand (sprintf ("~%s", x.name)))
+-%! && strcmp ("foobar", tilde_expand ("foobar"))));
+-
+ %% test/octave.test/system/tilde_expand-2.m
+ %!error <Invalid call to tilde_expand.*> tilde_expand ();
+
diff --git a/sci-mathematics/octave/octave-2.9.19.ebuild b/sci-mathematics/octave/octave-2.9.19.ebuild
new file mode 100644
index 000000000..ab3a153f5
--- /dev/null
+++ b/sci-mathematics/octave/octave-2.9.19.ebuild
@@ -0,0 +1,124 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/octave/octave-2.1.73-r1.ebuild,v 1.2 2006/11/03 15:44:39 markusle Exp $
+
+inherit flag-o-matic fortran autotools
+
+DESCRIPTION="GNU Octave is a high-level language (MatLab compatible) intended for numerical computations"
+LICENSE="GPL-2"
+HOMEPAGE="http://www.octave.org/"
+SRC_URI="ftp://ftp.gnu.org/pub/gnu/${PN}/${P}.tar.bz2"
+
+SLOT="0"
+IUSE="emacs readline zlib doc hdf5 curl fftw"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="dev-util/dejagnu
+ virtual/blas
+ virtual/lapack
+ dev-libs/libpcre
+ >=sys-libs/ncurses-5.2-r3
+ >=sci-visualization/gnuplot-3.7.1-r3
+ >=sci-mathematics/glpk-4.15
+ >=dev-util/gperf-2.7.2
+ >=media-libs/qhull-3.1-r1
+ virtual/latex-base
+ fftw? ( >=sci-libs/fftw-3.1.2 )
+ zlib? ( sys-libs/zlib )
+ hdf5? ( sci-libs/hdf5 )
+ curl? ( net-misc/curl )
+ !=app-text/texi2html-1.70"
+
+FORTRAN="gfortran g77 f2c"
+
+src_unpack() {
+ unpack ${A}
+ cd "${S}"
+
+ epatch "${FILESDIR}"/${PN}-2.9.18-test-fix.patch
+}
+
+src_compile() {
+ local myconf="--localstatedir=/var/state/octave --enable-rpath"
+
+ # force use of external blas, lapack, fftw
+ myconf="${myconf} --with-blas=blas --with-lapack=lapack"
+ myconf="${myconf} --enable-static --enable-shared --enable-dl"
+
+ # disable sparse matrix stuff for now
+ myconf="${myconf} --without-umfpack --without-colamd"
+ myconf="${myconf} --without-ccolamd --without-cholmod --without-cxsparse"
+
+ if [[ "${FORTRANC}" == "g77" ]]; then
+ myconf="${myconf} --with-f77"
+ elif [[ "${FORTRANC}" == "f2c" ]]; then
+ myconf="${myconf} --with-f2c"
+ fi
+
+ econf \
+ $(use_with hdf5) \
+ $(use_with curl) \
+ $(use_with zlib) \
+ $(use_with fftw) \
+ $(use_enable readline) \
+ ${myconf} \
+ || die "econf failed"
+
+ emake || die "emake failed"
+}
+
+src_install() {
+ cd "${S}"
+ make install DESTDIR="${D}" || die "make install failed"
+ if use doc; then
+ octave-install-doc || die "Octave doc install failed"
+ fi
+ if use emacs; then
+ cd emacs
+ exeinto /usr/bin
+ doexe octave-tags || die "Failed to install octave-tags"
+ doman octave-tags.1 || die "Failed to install octave-tags.1"
+ for emacsdir in /usr/share/emacs/site-lisp /usr/lib/xemacs/site-lisp; do
+ insinto ${emacsdir}
+ doins *.el || die "Failed to install emacs files"
+ done
+ cd ..
+ fi
+ dodir /etc/env.d || die
+ echo "LDPATH=/usr/lib/octave-${PV}" > "${D}"/etc/env.d/99octave \
+ || die "Failed to set up env.d files"
+
+ # Fixes ls-R files to remove /var/tmp/portage references.
+ sed -i -e "s:${D}::g" "${D}"/usr/libexec/${PN}/ls-R && \
+ sed -i -e "s:${D}::g" "${D}"/usr/share/${PN}/ls-R || \
+ die "Failed to fix ls-R files."
+}
+
+pkg_postinst() {
+ echo
+ einfo "Some users have reported failures at running simple tests if"
+ einfo "octave was built with agressive optimisations. You can check if"
+ einfo "your setup is affected by this bug by running the following test"
+ einfo "(inside the octave interpreter):"
+ einfo
+ einfo "octave:1> y = [1 3 4 2 1 5 3 5 6 7 4 5 7 10 11 3];"
+ einfo "octave:2> g = [1 1 1 1 1 1 1 1 2 2 2 2 2 3 3 3];"
+ einfo "octave:3> anova(y, g)"
+ einfo
+ einfo "If these commands complete successfully with no error message,"
+ einfo "your installation should be ok. Otherwise, try recompiling"
+ einfo "octave using less agressive \"CFLAGS\" (combining \"-O3\" and"
+ einfo "\"-march=pentium4\" is known to cause problems)."
+ echo
+}
+
+octave-install-doc() {
+ echo "Installing documentation..."
+ insinto /usr/share/doc/${PF}
+ doins doc/faq/Octave-FAQ.pdf || die
+ doins doc/interpreter/octave.pdf || die
+ doins doc/liboctave/liboctave.pdf || die
+ doins doc/refcard/refcard-a4.pdf || die
+ doins doc/refcard/refcard-legal.pdf || die
+ doins doc/refcard/refcard-letter.pdf || die
+}
diff --git a/sci-mathematics/octave/octave-3.0.0.ebuild b/sci-mathematics/octave/octave-3.0.0.ebuild
new file mode 100644
index 000000000..16bc4d7dd
--- /dev/null
+++ b/sci-mathematics/octave/octave-3.0.0.ebuild
@@ -0,0 +1,141 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/octave/octave-2.1.73-r1.ebuild,v 1.2 2006/11/03 15:44:39 markusle Exp $
+
+inherit flag-o-matic fortran autotools xemacs-elisp-common
+
+DESCRIPTION="GNU Octave is a high-level language (MatLab compatible) intended for numerical computations"
+LICENSE="GPL-2"
+HOMEPAGE="http://www.octave.org/"
+SRC_URI="ftp://ftp.gnu.org/pub/gnu/${PN}/${P}.tar.bz2"
+
+SLOT="0"
+IUSE="emacs readline zlib doc hdf5 curl fftw xemacs sparse"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="dev-util/dejagnu
+ virtual/blas
+ virtual/lapack
+ dev-libs/libpcre
+ >=sys-libs/ncurses-5.2-r3
+ >=sci-visualization/gnuplot-3.7.1-r3
+ >=sci-mathematics/glpk-4.15
+ >=dev-util/gperf-2.7.2
+ >=media-libs/qhull-3.1-r1
+ virtual/latex-base
+ fftw? ( >=sci-libs/fftw-3.1.2 )
+ zlib? ( sys-libs/zlib )
+ hdf5? ( sci-libs/hdf5 )
+ curl? ( net-misc/curl )
+ xemacs? ( virtual/xemacs )
+ sparse? ( sci-libs/umfpack
+ sci-libs/colamd
+ sci-libs/ccolamd
+ sci-libs/cholmod
+ sci-libs/cxsparse )
+ !=app-text/texi2html-1.70"
+
+FORTRAN="gfortran g77 f2c"
+
+src_unpack() {
+ unpack ${A}
+ cd "${S}"
+
+ epatch "${FILESDIR}"/${PN}-2.9.18-test-fix.patch
+}
+
+src_compile() {
+ local myconf="--localstatedir=/var/state/octave --enable-rpath"
+
+ # force use of external blas, lapack, fftw
+ myconf="${myconf} --with-blas=blas --with-lapack=lapack"
+ myconf="${myconf} --enable-static --enable-shared --enable-dl"
+
+ # disable sparse matrix stuff for now
+ local sparse_conf;
+ if use sparse; then
+ sparse_conf="--with-umfpack --with-colamd --with-ccolamd"
+ sparse_conf="${sparse_conf} --with-cholmod --with-cxsparse"
+ else
+ sparse_conf="--without-umfpack --without-colamd --without-ccolamd"
+ sparse_conf="${sparse_conf} --without-cholmod --without-cxsparse"
+ fi
+ myconf="${myconf} ${sparse_conf}"
+
+ if [[ "${FORTRANC}" == "g77" ]]; then
+ myconf="${myconf} --with-f77"
+ elif [[ "${FORTRANC}" == "f2c" ]]; then
+ myconf="${myconf} --with-f2c"
+ fi
+
+ econf \
+ $(use_with hdf5) \
+ $(use_with curl) \
+ $(use_with zlib) \
+ $(use_with fftw) \
+ $(use_enable readline) \
+ ${myconf} \
+ || die "econf failed"
+
+ emake || die "emake failed"
+
+ if use xemacs; then
+ cd "${S}/emacs"
+ xemacs-elisp-comp *.el
+ fi
+}
+
+src_install() {
+ cd "${S}"
+ make install DESTDIR="${D}" || die "make install failed"
+ if use doc; then
+ octave-install-doc || die "Octave doc install failed"
+ fi
+ if use emacs || use xemacs; then
+ cd emacs
+ exeinto /usr/bin
+ doexe octave-tags || die "Failed to install octave-tags"
+ doman octave-tags.1 || die "Failed to install octave-tags.1"
+ if use xemacs; then
+ xemacs-elisp-install ${PN} *.el *.elc
+ fi
+ cd ..
+ fi
+ dodir /etc/env.d || die
+ echo "LDPATH=/usr/lib/octave-${PV}" > "${D}"/etc/env.d/99octave \
+ || die "Failed to set up env.d files"
+
+ # Fixes ls-R files to remove /var/tmp/portage references.
+ sed -i -e "s:${D}::g" "${D}"/usr/libexec/${PN}/ls-R && \
+ sed -i -e "s:${D}::g" "${D}"/usr/share/${PN}/ls-R || \
+ die "Failed to fix ls-R files."
+}
+
+pkg_postinst() {
+ echo
+ einfo "Some users have reported failures at running simple tests if"
+ einfo "octave was built with agressive optimisations. You can check if"
+ einfo "your setup is affected by this bug by running the following test"
+ einfo "(inside the octave interpreter):"
+ einfo
+ einfo "octave:1> y = [1 3 4 2 1 5 3 5 6 7 4 5 7 10 11 3];"
+ einfo "octave:2> g = [1 1 1 1 1 1 1 1 2 2 2 2 2 3 3 3];"
+ einfo "octave:3> anova(y, g)"
+ einfo
+ einfo "If these commands complete successfully with no error message,"
+ einfo "your installation should be ok. Otherwise, try recompiling"
+ einfo "octave using less agressive \"CFLAGS\" (combining \"-O3\" and"
+ einfo "\"-march=pentium4\" is known to cause problems)."
+ echo
+}
+
+octave-install-doc() {
+ echo "Installing documentation..."
+ insinto /usr/share/doc/${PF}
+ doins doc/faq/Octave-FAQ.pdf || die
+ doins doc/interpreter/octave.pdf || die
+ doins doc/liboctave/liboctave.pdf || die
+ doins doc/refcard/refcard-a4.pdf || die
+ doins doc/refcard/refcard-legal.pdf || die
+ doins doc/refcard/refcard-letter.pdf || die
+}