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authorJustin Bronder <jsbronder@gentoo.org>2016-08-29 16:45:07 -0400
committerJustin Bronder <jsbronder@gentoo.org>2016-08-29 16:45:07 -0400
commit38018248611beb56550f01820dd5e83b3b23b77a (patch)
tree48ee8168586c194a5e2d7fb04feaaeaec1d450db /sys-cluster
parentsci-biology/vcftool: version bump; adjust to new build system (diff)
parentsys-cluster/mpich: bring back sysconfdir logic (diff)
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Merge remote-tracking branch 'github/multilib_mpi'
Diffstat (limited to 'sys-cluster')
-rw-r--r--sys-cluster/mpich/mpich-3.2-r2.ebuild138
-rw-r--r--sys-cluster/openmpi/openmpi-1.10.3-r2.ebuild193
2 files changed, 331 insertions, 0 deletions
diff --git a/sys-cluster/mpich/mpich-3.2-r2.ebuild b/sys-cluster/mpich/mpich-3.2-r2.ebuild
new file mode 100644
index 000000000..64ebfc060
--- /dev/null
+++ b/sys-cluster/mpich/mpich-3.2-r2.ebuild
@@ -0,0 +1,138 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+FORTRAN_NEEDED=fortran
+FORTRAN_STANDARD="77 90"
+
+inherit fortran-2 multilib-minimal mpi
+
+MY_PV=${PV/_/}
+DESCRIPTION="A high performance and portable MPI implementation"
+HOMEPAGE="http://www.mpich.org/"
+SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="mpich"
+KEYWORDS="~amd64 ~hppa ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+cxx doc fortran mpi-threads romio threads"
+
+COMMON_DEPEND="
+ >=dev-libs/libaio-0.3.109-r5[${MULTILIB_USEDEP}]
+ >=sys-apps/hwloc-1.10.0-r2[${MULTILIB_USEDEP}]
+ romio? ( net-fs/nfs-utils )
+ $(mpi_imp_deplist)"
+
+DEPEND="${COMMON_DEPEND}
+ dev-lang/perl
+ sys-devel/libtool"
+
+RDEPEND="${COMMON_DEPEND}"
+
+S="${WORKDIR}"/${PN}-${MY_PV}
+
+MULTILIB_WRAPPED_HEADERS=(
+ /usr/include/mpicxx.h
+ /usr/include/mpi.h
+ /usr/include/opa_config.h
+)
+
+src_prepare() {
+ default
+
+ # Using MPICHLIB_LDFLAGS doesn't seem to fully work.
+ sed -i 's| *@WRAPPER_LDFLAGS@ *||' \
+ src/packaging/pkgconfig/mpich.pc.in \
+ src/env/*.in \
+ || die
+}
+
+multilib_src_configure() {
+ # The configure statements can be somewhat confusing, as they
+ # don't all show up in the top level configure, however, they
+ # are picked up in the children directories. Hence the separate
+ # local vars.
+
+ local c=
+ if use mpi-threads; then
+ # MPI-THREAD requries threading.
+ c="${c} --with-thread-package=pthreads"
+ c="${c} --enable-threads=runtime"
+ else
+ if use threads ; then
+ c="${c} --with-thread-package=pthreads"
+ else
+ c="${c} --with-thread-package=none"
+ fi
+ c="${c} --enable-threads=single"
+ fi
+
+ if ! mpi_classed; then
+ c="${c} --sysconfdir=${EPREFIX}/etc/${PN}"
+ c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}"
+ else
+ c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}"
+ fi
+
+ export MPICHLIB_CFLAGS="${CFLAGS}"
+ export MPICHLIB_CPPFLAGS="${CPPFLAGS}"
+ export MPICHLIB_CXXFLAGS="${CXXFLAGS}"
+ export MPICHLIB_FFLAGS="${FFLAGS}"
+ export MPICHLIB_FCFLAGS="${FCFLAGS}"
+ export MPICHLIB_LDFLAGS="${LDFLAGS}"
+ unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS
+
+ ECONF_SOURCE=${S} econf $(mpi_econf_args) \
+ --enable-shared \
+ --with-hwloc-prefix="${EPREFIX}/usr" \
+ ${c} \
+ --with-pm=hydra \
+ --disable-fast \
+ --enable-versioning \
+ --with-hwloc-prefix=/usr \
+ $(use_enable romio) \
+ $(use_enable cxx) \
+ $(multilib_native_use_enable fortran fortran all)
+}
+
+multilib_src_test() {
+ emake -j1 check
+}
+
+multilib_src_install() {
+ default
+
+ # fortran header cannot be wrapped (bug #540508), workaround part 1
+ if multilib_is_native_abi && use fortran; then
+ mkdir "${T}"/fortran || die
+ mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die
+ mv "${ED}"/$(mpi_root)/usr/include/*.mod "${T}"/fortran || die
+ else
+ # some fortran files get installed unconditionally
+ rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/include/*.mod || die
+ fi
+}
+
+multilib_src_install_all() {
+ # fortran header cannot be wrapped (bug #540508), workaround part 2
+ if use fortran; then
+ mv "${T}"/fortran/* "${ED}"/$(mpi_root)/usr/include || die
+ fi
+
+ mpi_dodir /usr/share/doc/${PF}
+ mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES
+ mpi_newdoc src/pm/hydra/README README.hydra
+ if use romio; then
+ mpi_newdoc src/mpi/romio/README README.romio
+ fi
+
+ local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g')
+ if ! use doc; then
+ rm -rf "${d}"usr/share/doc/${PF}/www* || die
+ fi
+
+ MPI_ESELECT_FILE="eselect.mpi.mpich"
+ mpi_imp_add_eselect
+}
diff --git a/sys-cluster/openmpi/openmpi-1.10.3-r2.ebuild b/sys-cluster/openmpi/openmpi-1.10.3-r2.ebuild
new file mode 100644
index 000000000..adea3143d
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-1.10.3-r2.ebuild
@@ -0,0 +1,193 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+ openmpi_fabrics_ofed
+ openmpi_fabrics_knem
+ openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+ openmpi_rm_pbs
+ openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+ openmpi_ofed_features_control-hdr-padding
+ openmpi_ofed_features_connectx-xrc
+ openmpi_ofed_features_udcm
+ openmpi_ofed_features_rdmacm
+ openmpi_ofed_features_dynamic-sl
+ openmpi_ofed_features_failover"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="http://www.open-mpi.org"
+SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux"
+IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt
+ ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+ openmpi_rm_pbs? ( !openmpi_rm_slurm )
+ openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )"
+
+MPI_UNCLASSED_DEP_STR="
+ vt? (
+ !dev-libs/libotf
+ !app-text/lcdf-typetools
+ )"
+
+CDEPEND="
+ >=dev-libs/libevent-2.0.21[${MULTILIB_USEDEP}]
+ dev-libs/libltdl:0[${MULTILIB_USEDEP}]
+ >=sys-apps/hwloc-1.10.0-r2[${MULTILIB_USEDEP},numa?]
+ >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
+ cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 )
+ elibc_FreeBSD? ( dev-libs/libexecinfo )
+ openmpi_fabrics_ofed? ( sys-fabric/ofed:* )
+ openmpi_fabrics_knem? ( sys-cluster/knem )
+ openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* )
+ openmpi_rm_pbs? ( sys-cluster/torque )
+ openmpi_rm_slurm? ( sys-cluster/slurm )
+ openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )
+ $(mpi_imp_deplist)"
+
+RDEPEND="${CDEPEND}
+ java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+ java? ( >=virtual/jdk-1.6 )"
+
+MULTILIB_WRAPPED_HEADERS=(
+ /usr/include/mpi.h
+)
+
+pkg_setup() {
+ fortran-2_pkg_setup
+ java-pkg-opt-2_pkg_setup
+ MPI_ESELECT_FILE="eselect.mpi.openmpi"
+
+ if use mpi-threads; then
+ ewarn
+ ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by"
+ ewarn "default and officially unsupported by upstream."
+ ewarn "You may stop now and set USE=-mpi-threads"
+ ewarn
+ fi
+
+ elog
+ elog "OpenMPI has an overwhelming count of configuration options."
+ elog "Don't forget the EXTRA_ECONF environment variable can let you"
+ elog "specify configure options if you find them necessary."
+ elog
+}
+
+src_prepare() {
+ default
+
+ # Necessary for scalibility, see
+ # http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+ if use threads; then
+ echo 'oob_tcp_listen_mode = listen_thread' \
+ >> opal/etc/openmpi-mca-params.conf || die
+ fi
+}
+
+multilib_src_configure() {
+ if use java; then
+ # We must always build with the right -source and -target
+ # flags. Passing flags to javac isn't explicitly supported here
+ # but we can cheat by overriding the configure test for javac.
+ export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+ fi
+
+ ECONF_SOURCE=${S} econf $(mpi_econf_args) \
+ --sysconfdir="${EPREFIX}/etc/${PN}" \
+ --enable-pretty-print-stacktrace \
+ --enable-orterun-prefix-by-default \
+ --with-hwloc="${EPREFIX}/usr" \
+ --with-libltdl="${EPREFIX}/usr" \
+ --enable-mpi-fortran=$(usex fortran all no) \
+ $(usex !vt --enable-contrib-no-build=vt "") \
+ $(use_enable cxx mpi-cxx) \
+ $(use_with cma) \
+ $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \
+ $(use_enable romio io-romio) \
+ $(use_enable heterogeneous) \
+ $(use_enable ipv6) \
+ $(multilib_native_use_enable java) \
+ $(multilib_native_use_enable java mpi-java) \
+ $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \
+ $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
+ $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \
+ $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \
+ $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \
+ $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \
+ $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \
+ $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \
+ $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \
+ $(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \
+ $(multilib_native_use_with openmpi_rm_pbs tm) \
+ $(multilib_native_use_with openmpi_rm_slurm slurm)
+}
+
+multilib_src_test() {
+ # Doesn't work with the default src_test as the dry run (-n) fails.
+ emake -j1 check
+}
+
+multilib_src_install() {
+ default
+
+ # fortran header cannot be wrapped (bug #540508), workaround part 1
+ if multilib_is_native_abi && use fortran; then
+ mkdir "${T}"/fortran || die
+ mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die
+ else
+ # some fortran files get installed unconditionally
+ rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/bin/mpif* || die
+ fi
+}
+
+multilib_src_install_all() {
+ # From USE=vt see #359917
+ rm -rf "${ED}"/$(mpi_root)/usr/share/libtool &> /dev/null
+
+ # fortran header cannot be wrapped (bug #540508), workaround part 2
+ if use fortran; then
+ mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die
+ fi
+
+ # Avoid collisions with libevent
+ rm -rf "${ED}"/$(mpi_root)/usr/include/event2 &> /dev/null || die
+
+ # Remove la files, no static libs are installed and we have pkg-config
+ find "${ED}" -name '*.la' -delete || die
+
+ if use java; then
+ local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar
+ java-pkg_dojar "${mpi_jar}"
+ # We don't want to install the jar file twice
+ # so let's clean after ourselves.
+ rm "${mpi_jar}" || die
+ fi
+
+ mpi_dodoc README AUTHORS NEWS VERSION
+ mpi_imp_add_eselect
+}