diff options
| author |   Aisha Tammy <gentoo@aisha.cc> | 2020-09-27 15:30:24 +0000 |
|---|---|---|
| committer | Aisha Tammy <gentoo@aisha.cc> | 2020-09-27 15:31:44 +0000 |
| commit | 7c67d4f1945c5407327f63d6e422e63069e5611c (patch) | |
| tree | 07aa3f219214122ff6dab09d936c06233a52f0b8 /sys-cluster | |
| parent | sci-visualization/yt: bump python compat (diff) | |
| download | sci-7c67d4f1945c5407327f63d6e422e63069e5611c.tar.gz sci-7c67d4f1945c5407327f63d6e422e63069e5611c.tar.bz2 sci-7c67d4f1945c5407327f63d6e422e63069e5611c.zip | |
sys-cluster/{mpich{,2},mvapich,openmpi}: drop packages
present in ::gentoo
Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
Diffstat (limited to 'sys-cluster')
43 files changed, 0 insertions, 3203 deletions
diff --git a/sys-cluster/mpich/Manifest b/sys-cluster/mpich/Manifest deleted file mode 100644 index d96bcb053..000000000 --- a/sys-cluster/mpich/Manifest +++ /dev/null @@ -1,5 +0,0 @@ -DIST mpich-3.0.4.tar.gz 10921075 BLAKE2B 341aaac23277aed05a4448ea03d9caf1ee14cfe327a770c95d620fc1ee1ea7bfa6df36860aa44aad162eb6d630d35fdfb30ae9a866d67680ab71c7b4326c109c SHA512 f9d8b2cf561fe5f85c12512ef4dd7b0cf5ec8b53ddb07bfa0d1db2e3c8ae0382c77e0661f46b82ec96b05d18ea2d25328bb84e9528ac06e5925f30ec8ef030d0 -DIST mpich-3.1.3.tar.gz 11487313 BLAKE2B 15d39d8617e7b503bd1cb7d05ef098898736c2d634da2e50f33d7d3a92f2c0aeeb72ec152ee1907ab0658e5c485bd7ed8c2639b8d2abf1839981c542cfe2fc29 SHA512 3071d75e925808c13ea528aaff81a2ee44a4eb9732c74005a0cedd5a710aeafc691d30c7a035ae0aba14bd2b837c1c788202a7612599d3ffac8e5a9299467c09 -DIST mpich-3.1.4.tar.gz 11325036 BLAKE2B 606003f4a9120930841a261698ff9c572f289a88d1db40bf02c8ed89f67a7ba1081652ce39acbf995b7c42e7becb9336fbb262c04873f25a939e5f963eec7de3 SHA512 55bd4d12a42b9ebc116016bd777eb2b8ed8c51e69f5ea5faf823eba0aeb7eadfe2848c4cca3032aa38841a25a4902c07cec2409811149a057c4aa99a25c6b6da -DIST mpich-3.2.1.tar.gz 11908154 BLAKE2B 86437d9fefae06e32b5d1ba983e6d70f61e6e7a99b92527b966f5dcd1c7fb44fbfe155226c369fb5dede15a554d89ff674eaeeedfb47753b7e73e93ecdca91ce SHA512 659a11cf02302f27eb1db77667dd4c7a4f8008b1d73f5f0f0f28ee6b5d9cca2130bac3d010a132136ba15a25a738ec9cbda67255133aeb42f0d82a2ded23d23d -DIST mpich-3.2.tar.gz 11862150 BLAKE2B 2e0414b2e11b08a59497fa255d464a2130c754ba8798b99a8b84f7232179906bb27906abbe58b9546833541c238f42ae06df90bfe1133d3ff2d85921d9736452 SHA512 083c51655b4355827bd7fa4fe528046e2bc77b7747d869ff87b79fa324c3cc2a9b5640ccb7271490ccc0dd627e354a33a449bbab448501bbfddcfe5f999ee717 diff --git a/sys-cluster/mpich/files/eselect.mpi.mpich b/sys-cluster/mpich/files/eselect.mpi.mpich deleted file mode 100644 index 703d71176..000000000 --- a/sys-cluster/mpich/files/eselect.mpi.mpich +++ /dev/null @@ -1,8 +0,0 @@ -MPI_CC=@ROOT@usr/bin/mpicc -MPI_CXX=@ROOT@usr/bin/mpicxx -MPI_F77=@ROOT@usr/bin/mpif77 -MPI_FC=@ROOT@usr/bin/mpif90 -CLASS_BASE_MPI_IMP=@BASE_IMP@ -PATH=@ROOT@usr/bin -MANPATH=@ROOT@usr/share/man -LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ diff --git a/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch b/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch deleted file mode 100644 index 415a40932..000000000 --- a/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch +++ /dev/null @@ -1,42 +0,0 @@ -From ab59467c51206ac72546e4b734a1b41bf3d0345d Mon Sep 17 00:00:00 2001 -From: Kavitha Tiptur Madhu <kmadhu@anl.gov> -Date: Fri, 19 Jan 2018 10:44:56 -0600 -Subject: [PATCH] hydra: remove replicate membind option - -The "replicate" option of membind is not well supported on a number of -operating systems, and has been removed from hwloc (in v2.0) as well. -This patch gets rid of that option in Hydra, in preparation for an -upgrade to hwloc-2.0. - -Signed-off-by: Pavan Balaji <balaji@anl.gov> ---- - src/pm/hydra/tools/topo/hwloc/topo_hwloc.c | 3 --- - src/pm/hydra/ui/mpich/utils.c | 1 - - 2 files changed, 4 deletions(-) - -diff --git a/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c b/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c -index ce15fe7702..74029fad61 100644 ---- a/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c -+++ b/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c -@@ -424,9 +424,6 @@ HYD_status HYDT_topo_hwloc_init(const char *binding, const char *mapping, const - else if (!strncmp(membind, "interleave:", strlen("interleave:"))) { - HYDT_topo_hwloc_info.membind = HWLOC_MEMBIND_INTERLEAVE; - } -- else if (!strncmp(membind, "replicate:", strlen("replicate:"))) { -- HYDT_topo_hwloc_info.membind = HWLOC_MEMBIND_REPLICATE; -- } - else { - HYDU_ERR_SETANDJUMP(status, HYD_INTERNAL_ERROR, - "unrecognized membind policy \"%s\"\n", membind); -diff --git a/src/pm/hydra/ui/mpich/utils.c b/src/pm/hydra/ui/mpich/utils.c -index 9e18a754b5..a9c9dde015 100644 ---- a/src/pm/hydra/ui/mpich/utils.c -+++ b/src/pm/hydra/ui/mpich/utils.c -@@ -940,7 +940,6 @@ static void bind_to_help_fn(void) - printf(" nexttouch -- closest to process that next touches memory\n"); - printf(" bind:<list> -- bind to memory node list\n"); - printf(" interleave:<list> -- interleave among memory node list\n"); -- printf(" replicate:<list> -- replicate among memory node list\n"); - } - - static HYD_status bind_to_fn(char *arg, char ***argv) diff --git a/sys-cluster/mpich/metadata.xml b/sys-cluster/mpich/metadata.xml deleted file mode 100644 index 6cbe440fa..000000000 --- a/sys-cluster/mpich/metadata.xml +++ /dev/null @@ -1,21 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>jsbronder@gentoo.org</email> - <name>Justin Bronder</name> - </maintainer> - <maintainer type="person"> - <email>balaji@mcs.anl.gov</email> - <name>Pavan Balaji</name> - <description>Upstream Contact</description> - </maintainer> - <maintainer type="project"> - <email>cluster@gentoo.org</email> - <name>Gentoo Cluster Project</name> - </maintainer> - <use> - <flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag> - <flag name="romio">Build the ROMIO MPI-IO component</flag> - </use> -</pkgmetadata> diff --git a/sys-cluster/mpich/mpich-3.0.4.ebuild b/sys-cluster/mpich/mpich-3.0.4.ebuild deleted file mode 100644 index 6a32941cd..000000000 --- a/sys-cluster/mpich/mpich-3.0.4.ebuild +++ /dev/null @@ -1,121 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED=fortran - -inherit fortran-2 mpi - -MY_PV=${PV/_/} -DESCRIPTION="A high performance and portable MPI implementation" -HOMEPAGE="http://www.mpich.org/" -SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" - -SLOT="0" -LICENSE="mpich" -KEYWORDS="~amd64 ~x86" -IUSE="+cxx doc fortran mpi-threads romio threads" - -COMMON_DEPEND=" - dev-libs/libaio - sys-apps/hwloc - romio? ( net-fs/nfs-utils ) - $(mpi_imp_deplist)" - -DEPEND="${COMMON_DEPEND} - dev-lang/perl - sys-devel/libtool" - -RDEPEND="${COMMON_DEPEND}" - -S="${WORKDIR}"/${PN}-${MY_PV} - -pkg_setup() { - FORTRAN_STANDARD="77 90" - fortran-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.mpich" - - if use mpi-threads && ! use threads; then - ewarn "mpi-threads requires threads, assuming that's what you want" - fi -} - -src_prepare() { - # Using MPICHLIB_LDFLAGS doesn't seem to fully work. - sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ - src/packaging/pkgconfig/mpich.pc.in \ - src/env/*.in \ - || die -} - -src_configure() { - local c="--enable-shared" - - # The configure statements can be somewhat confusing, as they - # don't all show up in the top level configure, however, they - # are picked up in the children directories. - - if use mpi-threads; then - # MPI-THREAD requries threading. - c="${c} --with-thread-package=pthreads" - c="${c} --enable-threads=runtime" - else - if use threads ; then - c="${c} --with-thread-package=pthreads" - else - c="${c} --with-thread-package=none" - fi - c="${c} --enable-threads=single" - fi - - if ! mpi_classed; then - c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" - c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" - else - c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" - fi - - export MPICHLIB_CFLAGS=${CFLAGS} - export MPICHLIB_CPPFLAGS=${CPPFLAGS} - export MPICHLIB_CXXFLAGS=${CXXFLAGS} - export MPICHLIB_FFLAGS=${FFLAGS} - export MPICHLIB_FCFLAGS=${FCFLAGS} - export MPICHLIB_LDFLAGS=${LDFLAGS} - unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS - - econf $(mpi_econf_args) ${c} \ - --with-pm=hydra \ - --disable-mpe \ - --disable-fast \ - --enable-smpcoll \ - --enable-versioning \ - --with-hwloc-prefix=/usr \ - $(use_enable romio) \ - $(use_enable cxx) \ - $(use_enable fortran f77) \ - $(use_enable fortran fc) -} - -src_test() { - emake -j1 check -} - -src_install() { - local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') - - default - - mpi_dodir /usr/share/doc/${PF} - mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES - mpi_newdoc src/pm/hydra/README README.hydra - if use romio; then - mpi_newdoc src/mpi/romio/README README.romio - fi - - if ! use doc; then - rm -rf "${d}"usr/share/doc/${PF}/www* - fi - - mpi_imp_add_eselect -} diff --git a/sys-cluster/mpich/mpich-3.1.3-r2.ebuild b/sys-cluster/mpich/mpich-3.1.3-r2.ebuild deleted file mode 100644 index 4657ded7f..000000000 --- a/sys-cluster/mpich/mpich-3.1.3-r2.ebuild +++ /dev/null @@ -1,121 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED=fortran - -inherit fortran-2 mpi - -MY_PV=${PV/_/} -DESCRIPTION="A high performance and portable MPI implementation" -HOMEPAGE="http://www.mpich.org/" -SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" - -SLOT="0" -LICENSE="mpich" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+cxx doc fortran mpi-threads romio threads" - -COMMON_DEPEND=" - dev-libs/libaio - >=sys-apps/hwloc-1.9 - romio? ( net-fs/nfs-utils ) - $(mpi_imp_deplist)" - -DEPEND="${COMMON_DEPEND} - dev-lang/perl - sys-devel/libtool" - -RDEPEND="${COMMON_DEPEND}" - -S="${WORKDIR}"/${PN}-${MY_PV} - -pkg_setup() { - FORTRAN_STANDARD="77 90" - fortran-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.mpich" - - if use mpi-threads && ! use threads; then - ewarn "mpi-threads requires threads, assuming that's what you want" - fi -} - -src_prepare() { - # Using MPICHLIB_LDFLAGS doesn't seem to fully work. - sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ - src/packaging/pkgconfig/mpich.pc.in \ - src/env/*.in \ - || die -} - -src_configure() { - local c="--enable-shared" - - # The configure statements can be somewhat confusing, as they - # don't all show up in the top level configure, however, they - # are picked up in the children directories. - - if use mpi-threads; then - # MPI-THREAD requries threading. - c="${c} --with-thread-package=pthreads" - c="${c} --enable-threads=runtime" - else - if use threads ; then - c="${c} --with-thread-package=pthreads" - else - c="${c} --with-thread-package=none" - fi - c="${c} --enable-threads=single" - fi - - if ! mpi_classed; then - c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" - c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" - else - c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" - fi - - export MPICHLIB_CFLAGS=${CFLAGS} - export MPICHLIB_CPPFLAGS=${CPPFLAGS} - export MPICHLIB_CXXFLAGS=${CXXFLAGS} - export MPICHLIB_FFLAGS=${FFLAGS} - export MPICHLIB_FCFLAGS=${FCFLAGS} - export MPICHLIB_LDFLAGS=${LDFLAGS} - unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS - - econf $(mpi_econf_args) ${c} \ - --with-pm=hydra \ - --disable-mpe \ - --disable-fast \ - --enable-smpcoll \ - --enable-versioning \ - --with-hwloc-prefix=/usr \ - $(use_enable romio) \ - $(use_enable cxx) \ - $(use_enable fortran f77) \ - $(use_enable fortran fc) -} - -src_test() { - emake -j1 check -} - -src_install() { - local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') - - default - - mpi_dodir /usr/share/doc/${PF} - mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES - mpi_newdoc src/pm/hydra/README README.hydra - if use romio; then - mpi_newdoc src/mpi/romio/README README.romio - fi - - if ! use doc; then - rm -rf "${d}"usr/share/doc/${PF}/www* - fi - - mpi_imp_add_eselect -} diff --git a/sys-cluster/mpich/mpich-3.1.4-r1.ebuild b/sys-cluster/mpich/mpich-3.1.4-r1.ebuild deleted file mode 100644 index 2db9c9e60..000000000 --- a/sys-cluster/mpich/mpich-3.1.4-r1.ebuild +++ /dev/null @@ -1,121 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED=fortran - -inherit fortran-2 mpi - -MY_PV=${PV/_/} -DESCRIPTION="A high performance and portable MPI implementation" -HOMEPAGE="http://www.mpich.org/" -SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" - -SLOT="0" -LICENSE="mpich" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+cxx doc fortran mpi-threads romio threads" - -COMMON_DEPEND=" - dev-libs/libaio - >=sys-apps/hwloc-1.9 - romio? ( net-fs/nfs-utils ) - $(mpi_imp_deplist)" - -DEPEND="${COMMON_DEPEND} - dev-lang/perl - sys-devel/libtool" - -RDEPEND="${COMMON_DEPEND}" - -S="${WORKDIR}"/${PN}-${MY_PV} - -pkg_setup() { - FORTRAN_STANDARD="77 90" - fortran-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.mpich" - - if use mpi-threads && ! use threads; then - ewarn "mpi-threads requires threads, assuming that's what you want" - fi -} - -src_prepare() { - # Using MPICHLIB_LDFLAGS doesn't seem to fully work. - sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ - src/packaging/pkgconfig/mpich.pc.in \ - src/env/*.in \ - || die -} - -src_configure() { - local c="--enable-shared" - local hydra_c="--with-hwloc-prefix=/usr" - - # The configure statements can be somewhat confusing, as they - # don't all show up in the top level configure, however, they - # are picked up in the children directories. Hence the separate - # local vars. - - if use mpi-threads; then - # MPI-THREAD requries threading. - c="${c} --with-thread-package=pthreads" - c="${c} --enable-threads=runtime" - else - if use threads ; then - c="${c} --with-thread-package=pthreads" - else - c="${c} --with-thread-package=none" - fi - c="${c} --enable-threads=single" - fi - - if ! mpi_classed; then - c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" - c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" - else - c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" - fi - - export MPICHLIB_CFLAGS=${CFLAGS} - export MPICHLIB_CPPFLAGS=${CPPFLAGS} - export MPICHLIB_CXXFLAGS=${CXXFLAGS} - export MPICHLIB_FFLAGS=${FFLAGS} - export MPICHLIB_FCFLAGS=${FCFLAGS} - export MPICHLIB_LDFLAGS=${LDFLAGS} - unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS - - econf $(mpi_econf_args) ${c} \ - --with-pm=hydra \ - --disable-fast \ - --enable-versioning \ - ${hydra_c} \ - $(use_enable romio) \ - $(use_enable cxx) \ - $(use_enable fortran f77) \ - $(use_enable fortran fc) -} - -src_test() { - emake -j1 check -} - -src_install() { - local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') - - default - - mpi_dodir /usr/share/doc/${PF} - mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES - mpi_newdoc src/pm/hydra/README README.hydra - if use romio; then - mpi_newdoc src/mpi/romio/README README.romio - fi - - if ! use doc; then - rm -rf "${d}"usr/share/doc/${PF}/www* - fi - - mpi_imp_add_eselect -} diff --git a/sys-cluster/mpich/mpich-3.2-r1.ebuild b/sys-cluster/mpich/mpich-3.2-r1.ebuild deleted file mode 100644 index 2db9c9e60..000000000 --- a/sys-cluster/mpich/mpich-3.2-r1.ebuild +++ /dev/null @@ -1,121 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED=fortran - -inherit fortran-2 mpi - -MY_PV=${PV/_/} -DESCRIPTION="A high performance and portable MPI implementation" -HOMEPAGE="http://www.mpich.org/" -SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" - -SLOT="0" -LICENSE="mpich" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+cxx doc fortran mpi-threads romio threads" - -COMMON_DEPEND=" - dev-libs/libaio - >=sys-apps/hwloc-1.9 - romio? ( net-fs/nfs-utils ) - $(mpi_imp_deplist)" - -DEPEND="${COMMON_DEPEND} - dev-lang/perl - sys-devel/libtool" - -RDEPEND="${COMMON_DEPEND}" - -S="${WORKDIR}"/${PN}-${MY_PV} - -pkg_setup() { - FORTRAN_STANDARD="77 90" - fortran-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.mpich" - - if use mpi-threads && ! use threads; then - ewarn "mpi-threads requires threads, assuming that's what you want" - fi -} - -src_prepare() { - # Using MPICHLIB_LDFLAGS doesn't seem to fully work. - sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ - src/packaging/pkgconfig/mpich.pc.in \ - src/env/*.in \ - || die -} - -src_configure() { - local c="--enable-shared" - local hydra_c="--with-hwloc-prefix=/usr" - - # The configure statements can be somewhat confusing, as they - # don't all show up in the top level configure, however, they - # are picked up in the children directories. Hence the separate - # local vars. - - if use mpi-threads; then - # MPI-THREAD requries threading. - c="${c} --with-thread-package=pthreads" - c="${c} --enable-threads=runtime" - else - if use threads ; then - c="${c} --with-thread-package=pthreads" - else - c="${c} --with-thread-package=none" - fi - c="${c} --enable-threads=single" - fi - - if ! mpi_classed; then - c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" - c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" - else - c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" - fi - - export MPICHLIB_CFLAGS=${CFLAGS} - export MPICHLIB_CPPFLAGS=${CPPFLAGS} - export MPICHLIB_CXXFLAGS=${CXXFLAGS} - export MPICHLIB_FFLAGS=${FFLAGS} - export MPICHLIB_FCFLAGS=${FCFLAGS} - export MPICHLIB_LDFLAGS=${LDFLAGS} - unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS - - econf $(mpi_econf_args) ${c} \ - --with-pm=hydra \ - --disable-fast \ - --enable-versioning \ - ${hydra_c} \ - $(use_enable romio) \ - $(use_enable cxx) \ - $(use_enable fortran f77) \ - $(use_enable fortran fc) -} - -src_test() { - emake -j1 check -} - -src_install() { - local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') - - default - - mpi_dodir /usr/share/doc/${PF} - mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES - mpi_newdoc src/pm/hydra/README README.hydra - if use romio; then - mpi_newdoc src/mpi/romio/README README.romio - fi - - if ! use doc; then - rm -rf "${d}"usr/share/doc/${PF}/www* - fi - - mpi_imp_add_eselect -} diff --git a/sys-cluster/mpich/mpich-3.2-r2.ebuild b/sys-cluster/mpich/mpich-3.2-r2.ebuild deleted file mode 100644 index dc2e80944..000000000 --- a/sys-cluster/mpich/mpich-3.2-r2.ebuild +++ /dev/null @@ -1,136 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran -FORTRAN_STANDARD="77 90" - -inherit fortran-2 multilib-minimal mpi - -MY_PV=${PV/_/} -DESCRIPTION="A high performance and portable MPI implementation" -HOMEPAGE="http://www.mpich.org/" -SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" - -SLOT="0" -LICENSE="mpich" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+cxx doc fortran mpi-threads romio threads" - -COMMON_DEPEND=" - >=dev-libs/libaio-0.3.109-r5[${MULTILIB_USEDEP}] - >=sys-apps/hwloc-1.10.0-r2[${MULTILIB_USEDEP}] - romio? ( net-fs/nfs-utils ) - $(mpi_imp_deplist)" - -DEPEND="${COMMON_DEPEND} - dev-lang/perl - sys-devel/libtool" - -RDEPEND="${COMMON_DEPEND}" - -S="${WORKDIR}"/${PN}-${MY_PV} - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpicxx.h - /usr/include/mpi.h - /usr/include/opa_config.h -) - -src_prepare() { - default - - # Using MPICHLIB_LDFLAGS doesn't seem to fully work. - sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ - src/packaging/pkgconfig/mpich.pc.in \ - src/env/*.in \ - || die -} - -multilib_src_configure() { - # The configure statements can be somewhat confusing, as they - # don't all show up in the top level configure, however, they - # are picked up in the children directories. Hence the separate - # local vars. - - local c= - if use mpi-threads; then - # MPI-THREAD requries threading. - c="${c} --with-thread-package=pthreads" - c="${c} --enable-threads=runtime" - else - if use threads ; then - c="${c} --with-thread-package=pthreads" - else - c="${c} --with-thread-package=none" - fi - c="${c} --enable-threads=single" - fi - - if ! mpi_classed; then - c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" - c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" - else - c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" - fi - - export MPICHLIB_CFLAGS="${CFLAGS}" - export MPICHLIB_CPPFLAGS="${CPPFLAGS}" - export MPICHLIB_CXXFLAGS="${CXXFLAGS}" - export MPICHLIB_FFLAGS="${FFLAGS}" - export MPICHLIB_FCFLAGS="${FCFLAGS}" - export MPICHLIB_LDFLAGS="${LDFLAGS}" - unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS - - ECONF_SOURCE=${S} econf $(mpi_econf_args) \ - --enable-shared \ - --with-hwloc-prefix="${EPREFIX}/usr" \ - ${c} \ - --with-pm=hydra \ - --disable-fast \ - --enable-versioning \ - $(use_enable romio) \ - $(use_enable cxx) \ - $(multilib_native_use_enable fortran fortran all) -} - -multilib_src_test() { - emake -j1 check -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/*.mod "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/include/*.mod || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/* "${ED}"/$(mpi_root)/usr/include || die - fi - - mpi_dodir /usr/share/doc/${PF} - mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES - mpi_newdoc src/pm/hydra/README README.hydra - if use romio; then - mpi_newdoc src/mpi/romio/README README.romio - fi - - local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') - if ! use doc; then - rm -rf "${d}"usr/share/doc/${PF}/www* || die - fi - - MPI_ESELECT_FILE="eselect.mpi.mpich" - mpi_imp_add_eselect -} diff --git a/sys-cluster/mpich/mpich-3.2.1.ebuild b/sys-cluster/mpich/mpich-3.2.1.ebuild deleted file mode 100644 index ae3166474..000000000 --- a/sys-cluster/mpich/mpich-3.2.1.ebuild +++ /dev/null @@ -1,140 +0,0 @@ -# Copyright 1999-2018 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran -FORTRAN_STANDARD="77 90" - -inherit fortran-2 multilib-minimal mpi - -MY_PV=${PV/_/} -DESCRIPTION="A high performance and portable MPI implementation" -HOMEPAGE="http://www.mpich.org/" -SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" - -SLOT="0" -LICENSE="mpich" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+cxx doc fortran mpi-threads romio threads" - -COMMON_DEPEND=" - >=dev-libs/libaio-0.3.109-r5[${MULTILIB_USEDEP}] - >=sys-apps/hwloc-1.10.0-r2[${MULTILIB_USEDEP}] - romio? ( net-fs/nfs-utils ) - $(mpi_imp_deplist)" - -DEPEND="${COMMON_DEPEND} - dev-lang/perl - sys-devel/libtool" - -RDEPEND="${COMMON_DEPEND}" - -PATCHES=( - "${FILESDIR}/${P}-hwloc2.patch" -) - -S="${WORKDIR}"/${PN}-${MY_PV} - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpicxx.h - /usr/include/mpi.h - /usr/include/opa_config.h -) - -src_prepare() { - default - - # Using MPICHLIB_LDFLAGS doesn't seem to fully work. - sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ - src/packaging/pkgconfig/mpich.pc.in \ - src/env/*.in \ - || die -} - -multilib_src_configure() { - # The configure statements can be somewhat confusing, as they - # don't all show up in the top level configure, however, they - # are picked up in the children directories. Hence the separate - # local vars. - - local c= - if use mpi-threads; then - # MPI-THREAD requries threading. - c="${c} --with-thread-package=pthreads" - c="${c} --enable-threads=runtime" - else - if use threads ; then - c="${c} --with-thread-package=pthreads" - else - c="${c} --with-thread-package=none" - fi - c="${c} --enable-threads=single" - fi - - if ! mpi_classed; then - c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" - c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" - else - c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" - fi - - export MPICHLIB_CFLAGS="${CFLAGS}" - export MPICHLIB_CPPFLAGS="${CPPFLAGS}" - export MPICHLIB_CXXFLAGS="${CXXFLAGS}" - export MPICHLIB_FFLAGS="${FFLAGS}" - export MPICHLIB_FCFLAGS="${FCFLAGS}" - export MPICHLIB_LDFLAGS="${LDFLAGS}" - unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS - - ECONF_SOURCE=${S} econf $(mpi_econf_args) \ - --enable-shared \ - --with-hwloc-prefix="${EPREFIX}/usr" \ - ${c} \ - --with-pm=hydra \ - --disable-fast \ - --enable-versioning \ - $(use_enable romio) \ - $(use_enable cxx) \ - $(multilib_native_use_enable fortran fortran all) -} - -multilib_src_test() { - emake -j1 check -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/*.mod "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/include/*.mod || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/* "${ED}"/$(mpi_root)/usr/include || die - fi - - mpi_dodir /usr/share/doc/${PF} - mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES - mpi_newdoc src/pm/hydra/README README.hydra - if use romio; then - mpi_newdoc src/mpi/romio/README README.romio - fi - - local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') - if ! use doc; then - rm -rf "${d}"usr/share/doc/${PF}/www* || die - fi - - MPI_ESELECT_FILE="eselect.mpi.mpich" - mpi_imp_add_eselect -} diff --git a/sys-cluster/mpich2/Manifest b/sys-cluster/mpich2/Manifest deleted file mode 100644 index 8ae78c914..000000000 --- a/sys-cluster/mpich2/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mpich2-1.5.tar.gz 22826035 BLAKE2B 75075fbdd0111725e5bce1e828561125cdba2c91ecfb5af7c6ebd0603f8de05aa5813e57bf05b276607d0a6c0a378862b5631ab988f87e67299e7f651efdc76b SHA512 01ef68accdd60af805705c1c7a144a570eee6f01984939fe151a093f963c956fba366247b1058885ba1a2ff626278d30e928e03d394bd6cf2a4b6dab99586c15 diff --git a/sys-cluster/mpich2/files/0001-MPD_CONF_FILE-should-be-readable.patch b/sys-cluster/mpich2/files/0001-MPD_CONF_FILE-should-be-readable.patch deleted file mode 100644 index fa685e364..000000000 --- a/sys-cluster/mpich2/files/0001-MPD_CONF_FILE-should-be-readable.patch +++ /dev/null @@ -1,32 +0,0 @@ -From 4daa0519150f38bd322964157157fb3369ee0f38 Mon Sep 17 00:00:00 2001 -From: Justin Bronder <jsbronder@gmail.com> -Date: Wed, 16 Sep 2009 11:43:59 -0400 -Subject: [PATCH 1/3] MPD_CONF_FILE should be readable - -When looking for the MPD_CONF_FILE, the existance is not enough, the -file also needs to be readable by the current user. ---- - src/pm/mpd/mpdlib.py | 4 ++-- - 1 files changed, 2 insertions(+), 2 deletions(-) - -diff --git a/src/pm/mpd/mpdlib.py b/src/pm/mpd/mpdlib.py -index 8ea8a05..31ddcb4 100644 ---- a/src/pm/mpd/mpdlib.py -+++ b/src/pm/mpd/mpdlib.py -@@ -1359,11 +1359,11 @@ class MPDParmDB(dict): - if os.environ.has_key(k): - self[('env',k)] = os.environ[k] - def get_parms_from_rcfile(self,parmsToOverride,errIfMissingFile=0): -- if os.environ.has_key('MPD_CONF_FILE'): -+ if os.environ.has_key('MPD_CONF_FILE') and os.access(os.environ['MPD_CONF_FILE'], os.R_OK): - parmsRCFilename = os.environ['MPD_CONF_FILE'] - elif hasattr(os,'getuid') and os.getuid() == 0: # if ROOT - parmsRCFilename = os.path.abspath('/etc/mpd.conf') -- elif os.environ.has_key('HOME'): -+ elif os.environ.has_key('HOME') and os.access(os.path.join(os.environ['HOME'], '.mpd.conf'), os.R_OK): - parmsRCFilename = os.path.join(os.environ['HOME'],'.mpd.conf') - elif os.environ.has_key('HOMEPATH'): # e.g. win32 - parmsRCFilename = os.path.join(os.environ['HOMEPATH'],'.mpd.conf') --- -1.6.3.3 - diff --git a/sys-cluster/mpich2/files/0002-mpd_conf_file-search-order.patch b/sys-cluster/mpich2/files/0002-mpd_conf_file-search-order.patch deleted file mode 100644 index 2bb59e7c2..000000000 --- a/sys-cluster/mpich2/files/0002-mpd_conf_file-search-order.patch +++ /dev/null @@ -1,98 +0,0 @@ -From c5c6b5677854d2e835ed7d8d0497ab4f475c63fc Mon Sep 17 00:00:00 2001 -From: Justin Bronder <jsbronder@gmail.com> -Date: Wed, 16 Sep 2009 11:50:20 -0400 -Subject: [PATCH 2/3] mpd_conf_file search order. - -Make sure the search order for mpd.conf is the following: - - MPD_CONF_FILE set in environment - - .mpd.conf in the user's home directory - - The system wide default in SYSCONFDIR/mpd.conf ---- - src/pm/mpd/Makefile.in | 9 ++++++--- - src/pm/mpd/mpdroot.c | 27 +++++++++++++++++++++++++-- - 2 files changed, 31 insertions(+), 5 deletions(-) - -diff --git a/src/pm/mpd/Makefile.in b/src/pm/mpd/Makefile.in -index e1752f8..4ef65fc 100644 ---- a/src/pm/mpd/Makefile.in -+++ b/src/pm/mpd/Makefile.in -@@ -74,7 +74,7 @@ mpdroot: ${mpdroot_OBJECTS} - $(C_LINK) -o mpdroot ${mpdroot_OBJECTS} $(LIBS) - - mpdroot.o: ${srcdir}/mpdroot.c ${srcdir}/mpdroot.h mpdconf.h -- ${C_COMPILE} -c $< -+ ${C_COMPILE} -DSYSCONFDIR=\"@sysconfdir@\" -c $< - - # The following lines provide the right libraries for all example programs - .c: -@@ -128,7 +128,10 @@ install: all - @echo "copying python files/links into " $(DESTDIR)${bindir} - -@for cmd in ${PYTHON_SOURCE} ; do \ - if [ ! -s $(srcdir)/$$cmd.py ] ; then continue ; fi ; \ -- sed -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ -+ sed \ -+ -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' \ -+ -e 's,/etc/mpd.conf,@sysconfdir@/mpd.conf,g' \ -+ ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ - ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ - ( rm -f $(DESTDIR)${bindir}/temp$$cmd.py >/dev/null 2>&1 || exit 0 ) ; \ - done -@@ -210,7 +213,7 @@ mpich2-mpdroot: mpich2-mpdroot.o - - mpich2-mpdroot.o: ${srcdir}/mpdroot.c ${srcdir}/mpdroot.h mpdconf.h - ${INSTALL} -m 644 ${srcdir}/mpdroot.c mpich2-mpdroot.c -- ${C_COMPILE} -c mpich2-mpdroot.c -+ ${C_COMPILE} -DSYSCONFDIR=\"@sysconfdir@\" -c mpich2-mpdroot.c - rm -f mpich2-mpdroot.c - - # A special alternate installation target when using multiple process managers -diff --git a/src/pm/mpd/mpdroot.c b/src/pm/mpd/mpdroot.c -index 348c7b6..1a4f2a5 100644 ---- a/src/pm/mpd/mpdroot.c -+++ b/src/pm/mpd/mpdroot.c -@@ -19,6 +19,7 @@ int main(int argc, char *argv[]) - struct passwd *pwent; - char input_line[NAME_LEN+1], secretword[NAME_LEN+1]; - FILE *conf_file; -+ char *mpdconf_path = NULL; - - if ((pwent = getpwuid(getuid())) == NULL) /* for real id */ - { -@@ -26,10 +27,32 @@ int main(int argc, char *argv[]) - exit(-1); - } - -- conf_file = fopen("/etc/mpd.conf","r"); -+ /* -+ * We look for a readable mpd.conf in the following order. -+ * - MPD_CONF_FILE set in environment -+ * - .mpd.conf in the user's home directory -+ * - The system wide default in SYSCONFDIR/mpd.conf -+ */ -+ mpdconf_path = getenv("MPD_CONF_FILE"); -+ if ( ! (mpdconf_path && access( mpdconf_path, R_OK ) == 0) ){ -+ /* By far, the largest we'll need */ -+ size_t mpdconf_path_len = strlen(pwent->pw_dir) \ -+ + strlen(SYSCONFDIR) + strlen("/.mpd.conf"); -+ -+ mpdconf_path = (char*) malloc( sizeof(char) * mpdconf_path_len ); -+ if ( ! mpdconf_path ){ -+ fprintf( stderr, "%s: Failed to allocate a buffer for path to mpd.conf\n", argv[0]); -+ exit(-1); -+ } -+ snprintf( mpdconf_path, mpdconf_path_len-1, "%s/.mpd.conf", pwent->pw_dir ); -+ if ( access( mpdconf_path, R_OK ) != 0 ) -+ snprintf( mpdconf_path, mpdconf_path_len-1, "%s/mpd.conf", SYSCONFDIR ); -+ } -+ conf_file = fopen( mpdconf_path, "r"); -+ - if (conf_file == NULL) - { -- printf("%s: open failed for root's mpd conf file",argv[0]); -+ printf("%s: open failed for root's mpd conf file\n",argv[0]); - exit(-1); - } - secretword[0] = '\0'; --- -1.6.3.3 - diff --git a/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3-v1.2.1.patch b/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3-v1.2.1.patch deleted file mode 100644 index 266990c0b..000000000 --- a/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3-v1.2.1.patch +++ /dev/null @@ -1,36 +0,0 @@ -From 6572e098d5463bdcdcb9563ee9a736efed4a01c9 Mon Sep 17 00:00:00 2001 -From: Justin Bronder <jsbronder@gmail.com> -Date: Tue, 24 Nov 2009 10:27:51 -0500 -Subject: [PATCH] Fix pkgconfig for mpich2-ch3 v1.2.1 - -Variables were undefined, see http://bugs.gentoo.org/257821 - -$ pkg-config --list-all -[lots of output, then] -Variable 'exec_prefix' not defined in '/usr/lib/pkgconfig/mpich2-ch3.pc' ---- - src/packaging/pkgconfig/mpich2-ch3.pc.in | 8 ++++++-- - 1 files changed, 6 insertions(+), 2 deletions(-) - -diff --git a/src/packaging/pkgconfig/mpich2-ch3.pc.in b/src/packaging/pkgconfig/mpich2-ch3.pc.in -index b061464..275b535 100644 ---- a/src/packaging/pkgconfig/mpich2-ch3.pc.in -+++ b/src/packaging/pkgconfig/mpich2-ch3.pc.in -@@ -1,8 +1,12 @@ - # this gives access to the mpich2 header files -+prefix=@prefix@ -+exec_prefix=@exec_prefix@ -+libdir=@libdir@ -+includedir=@includedir@ - - Name: mpich2 - Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. - Version: @MPICH2_VERSION@ - Requires: --Libs: -L@libdir@ -lmpich -lmpichcxx -lopa @LIBS@ --Cflags: @CFLAGS@ -I@includedir@ -DMPICH_IGNORE_CXX_SEEK -+Libs: -L${libdir} -lmpich -lmpichcxx -lopa @LIBS@ -+Cflags: @CFLAGS@ -I${includedir} -DMPICH_IGNORE_CXX_SEEK --- -1.6.3.3 - diff --git a/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3.patch b/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3.patch deleted file mode 100644 index 04be31337..000000000 --- a/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3.patch +++ /dev/null @@ -1,36 +0,0 @@ -From 06eaaf72d12ca70275fd4f403af14bcb2d609718 Mon Sep 17 00:00:00 2001 -From: Justin Bronder <jsbronder@gmail.com> -Date: Wed, 16 Sep 2009 11:59:57 -0400 -Subject: [PATCH 3/3] Fix pkgconfig for mpich2-ch3 - -Variables were undefined, see http://bugs.gentoo.org/257821 - -$ pkg-config --list-all -[lots of output, then] -Variable 'exec_prefix' not defined in '/usr/lib/pkgconfig/mpich2-ch3.pc' ---- - src/packaging/pkgconfig/mpich2-ch3.pc.in | 8 ++++++-- - 1 files changed, 6 insertions(+), 2 deletions(-) - -diff --git a/src/packaging/pkgconfig/mpich2-ch3.pc.in b/src/packaging/pkgconfig/mpich2-ch3.pc.in -index df10b7f..8621ef5 100644 ---- a/src/packaging/pkgconfig/mpich2-ch3.pc.in -+++ b/src/packaging/pkgconfig/mpich2-ch3.pc.in -@@ -1,8 +1,12 @@ - # this gives access to the mpich2 header files -+prefix=@prefix@ -+exec_prefix=@exec_prefix@ -+libdir=@libdir@ -+includedir=@includedir@ - - Name: mpich2 - Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. - Version: @VERSION@ - Requires: --Libs: -L@libdir@ -lmpich -lmpichcxx @LIBS@ --Cflags: @CFLAGS@ -I@includedir@ -DMPICH_IGNORE_CXX_SEEK -+Libs: -L${libdir} -lmpich -lmpichcxx @LIBS@ -+Cflags: @CFLAGS@ -I${includedir} -DMPICH_IGNORE_CXX_SEEK --- -1.6.3.3 - diff --git a/sys-cluster/mpich2/files/eselect.mpi.mpich2 b/sys-cluster/mpich2/files/eselect.mpi.mpich2 deleted file mode 100644 index 703d71176..000000000 --- a/sys-cluster/mpich2/files/eselect.mpi.mpich2 +++ /dev/null @@ -1,8 +0,0 @@ -MPI_CC=@ROOT@usr/bin/mpicc -MPI_CXX=@ROOT@usr/bin/mpicxx -MPI_F77=@ROOT@usr/bin/mpif77 -MPI_FC=@ROOT@usr/bin/mpif90 -CLASS_BASE_MPI_IMP=@BASE_IMP@ -PATH=@ROOT@usr/bin -MANPATH=@ROOT@usr/share/man -LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ diff --git a/sys-cluster/mpich2/files/fix-pkg-config-files.patch b/sys-cluster/mpich2/files/fix-pkg-config-files.patch deleted file mode 100644 index d9c311e31..000000000 --- a/sys-cluster/mpich2/files/fix-pkg-config-files.patch +++ /dev/null @@ -1,119 +0,0 @@ -From cba731049a24735beb660dc236f61070aa6e387a Mon Sep 17 00:00:00 2001 -From: Justin Bronder <jsbronder@gmail.com> -Date: Thu, 5 Jan 2012 22:20:31 -0500 -Subject: [PATCH] fix pkg config files - -Conditionals are not supported. -https://trac.mcs.anl.gov/projects/mpich2/ticket/1044 ---- - configure.in | 6 ++++++ - src/packaging/pkgconfig/mpich2-c.pc.in | 8 +------- - src/packaging/pkgconfig/mpich2-cxx.pc.in | 8 +------- - src/packaging/pkgconfig/mpich2-f77.pc.in | 8 +------- - src/packaging/pkgconfig/mpich2-f90.pc.in | 8 +------- - 5 files changed, 10 insertions(+), 28 deletions(-) - -diff --git a/configure.in b/configure.in -index 294dc85..44b1010 100644 ---- a/configure.in -+++ b/configure.in -@@ -5332,6 +5332,12 @@ AC_SUBST(MPICH_TIMER_KIND) - # Setup other replaceable values - AC_SUBST(MPILIBNAME) - AC_SUBST(PMPILIBNAME) -+PKGCONFIG_PMPILIB="" -+if test "$NEEDSPLIB" = yes -a test -n "${PMPILIBNAME}" ; then -+ PKGCONFIG_PMPILIB="-l${PMPILIBNAME}" -+fi -+AC_SUBST(PKGCONFIG_PMPILIB) -+ - # Note that aint_size must be used instead of void_p where the desired check - # is on the size of MPI_Aint - aint_size=$ac_cv_sizeof_void_p -diff --git a/src/packaging/pkgconfig/mpich2-c.pc.in b/src/packaging/pkgconfig/mpich2-c.pc.in -index 394630b..e0ab3fa 100644 ---- a/src/packaging/pkgconfig/mpich2-c.pc.in -+++ b/src/packaging/pkgconfig/mpich2-c.pc.in -@@ -4,15 +4,9 @@ exec_prefix=@exec_prefix@ - libdir=@libdir@ - includedir=@includedir@ - --if test "@NEEDSPLIB@" = "yes" ; then -- plib=@PMPILIBNAME@ --else -- plib= --fi -- - Name: mpich2 - Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. - Version: @MPICH2_VERSION@ - Requires: --Libs: @WRAPPER_LDFLAGS@ -L${libdir} -l${plib} -l@MPILIBNAME@ @WRAPPER_LIBS@ -+Libs: @WRAPPER_LDFLAGS@ -L${libdir} @PKGCONFIG_PMPILIB@ -l@MPILIBNAME@ @WRAPPER_LIBS@ - Cflags: @WRAPPER_CPPFLAGS@ @WRAPPER_CFLAGS@ -I${includedir} -diff --git a/src/packaging/pkgconfig/mpich2-cxx.pc.in b/src/packaging/pkgconfig/mpich2-cxx.pc.in -index 936ade6..d82e184 100644 ---- a/src/packaging/pkgconfig/mpich2-cxx.pc.in -+++ b/src/packaging/pkgconfig/mpich2-cxx.pc.in -@@ -4,15 +4,9 @@ exec_prefix=@exec_prefix@ - libdir=@libdir@ - includedir=@includedir@ - --if test "@NEEDSPLIB@" = "yes" ; then -- plib=@PMPILIBNAME@ --else -- plib= --fi -- - Name: mpich2 - Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. - Version: @MPICH2_VERSION@ - Requires: --Libs: @WRAPPER_LDFLAGS@ -L${libdir} -l${plib} -l@MPILIBNAME@ @WRAPPER_LIBS@ -+Libs: @WRAPPER_LDFLAGS@ -L${libdir} @PKGCONFIG_PMPILIB@ -l@MPILIBNAME@ @WRAPPER_LIBS@ - Cxxflags: @WRAPPER_CPPFLAGS@ @WRAPPER_CXXFLAGS@ -I${includedir} -diff --git a/src/packaging/pkgconfig/mpich2-f77.pc.in b/src/packaging/pkgconfig/mpich2-f77.pc.in -index 291462e..193c2ab 100644 ---- a/src/packaging/pkgconfig/mpich2-f77.pc.in -+++ b/src/packaging/pkgconfig/mpich2-f77.pc.in -@@ -4,15 +4,9 @@ exec_prefix=@exec_prefix@ - libdir=@libdir@ - includedir=@includedir@ - --if test "@NEEDSPLIB@" = "yes" ; then -- plib=@PMPILIBNAME@ --else -- plib= --fi -- - Name: mpich2 - Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. - Version: @MPICH2_VERSION@ - Requires: --Libs: @WRAPPER_LDFLAGS@ -L${libdir} -l${plib} -l@MPILIBNAME@ @WRAPPER_LIBS@ -+Libs: @WRAPPER_LDFLAGS@ -L${libdir} @PKGCONFIG_PMPILIB@ -l@MPILIBNAME@ @WRAPPER_LIBS@ - Fflags: @WRAPPER_FFLAGS@ -I${includedir} -diff --git a/src/packaging/pkgconfig/mpich2-f90.pc.in b/src/packaging/pkgconfig/mpich2-f90.pc.in -index ca15e18..700976f 100644 ---- a/src/packaging/pkgconfig/mpich2-f90.pc.in -+++ b/src/packaging/pkgconfig/mpich2-f90.pc.in -@@ -4,15 +4,9 @@ exec_prefix=@exec_prefix@ - libdir=@libdir@ - includedir=@includedir@ - --if test "@NEEDSPLIB@" = "yes" ; then -- plib=@PMPILIBNAME@ --else -- plib= --fi -- - Name: mpich2 - Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. - Version: @MPICH2_VERSION@ - Requires: --Libs: @WRAPPER_LDFLAGS@ -L${libdir} -l${plib} -l@MPILIBNAME@ @WRAPPER_LIBS@ -+Libs: @WRAPPER_LDFLAGS@ -L${libdir} @PKGCONFIG_PMPILIB@ -l@MPILIBNAME@ @WRAPPER_LIBS@ - Fcflags: @WRAPPER_FCFLAGS@ -I${includedir} --- -1.7.3.4 - diff --git a/sys-cluster/mpich2/files/mpd.conf b/sys-cluster/mpich2/files/mpd.conf deleted file mode 100644 index 07dd98250..000000000 --- a/sys-cluster/mpich2/files/mpd.conf +++ /dev/null @@ -1,2 +0,0 @@ -secretword=test69hike -MPD_SECRETWORD=test69hike diff --git a/sys-cluster/mpich2/files/mpich2-1.0.8-gforker-install-alt-fix.patch b/sys-cluster/mpich2/files/mpich2-1.0.8-gforker-install-alt-fix.patch deleted file mode 100644 index 00774049f..000000000 --- a/sys-cluster/mpich2/files/mpich2-1.0.8-gforker-install-alt-fix.patch +++ /dev/null @@ -1,12 +0,0 @@ ---- mpich2-1.0.8/src/pm/gforker/Makefile.in-orig 2008-11-01 13:18:37.685990975 -0400 -+++ mpich2-1.0.8/src/pm/gforker/Makefile.in 2008-11-01 13:19:03.584804978 -0400 -@@ -176,6 +176,9 @@ - - # A special alternate installation target when using multiple process managers - install-alt: mpiexec -+ if [ ! -d ${DESTDIR}${exec_prefix} ] ; then $(MKDIR_P) ${DESTDIR}${exec_prefix} ; fi -+ if [ ! -d ${DESTDIR}${prefix} ] ; then $(MKDIR_P) ${DESTDIR}${prefix} ; fi -+ if [ ! -d ${DESTDIR}${bindir} ] ; then $(MKDIR_P) ${DESTDIR}${bindir} ; fi - $(INSTALL_PROGRAM) $(INSTALL_STRIP_FLAG) mpiexec $(DESTDIR)${bindir}/mpiexec.gforker - - diff --git a/sys-cluster/mpich2/files/mpich2-1.0.8-mpdconf-env.patch b/sys-cluster/mpich2/files/mpich2-1.0.8-mpdconf-env.patch deleted file mode 100644 index af3bbb239..000000000 --- a/sys-cluster/mpich2/files/mpich2-1.0.8-mpdconf-env.patch +++ /dev/null @@ -1,112 +0,0 @@ -diff -urN a/mpich2-1.0.8/src/pm/mpd/Makefile.in b/mpich2-1.0.8/src/pm/mpd/Makefile.in ---- a/mpich2-1.0.8/src/pm/mpd/Makefile.in 2008-09-17 16:40:53.000000000 -0400 -+++ b/mpich2-1.0.8/src/pm/mpd/Makefile.in 2009-04-01 16:38:02.236018295 -0400 -@@ -74,7 +74,7 @@ - $(C_LINK) -o mpdroot ${mpdroot_OBJECTS} $(LIBS) - - mpdroot.o: ${srcdir}/mpdroot.c ${srcdir}/mpdroot.h mpdconf.h -- ${C_COMPILE} -c $< -+ ${C_COMPILE} -DSYSCONFDIR=\"@sysconfdir@\" -c $< - - # The following lines provide the right libraries for all example programs - .c: -@@ -128,8 +128,11 @@ - @echo "copying python files/links into " $(DESTDIR)${bindir} - -@for cmd in ${PYTHON_SOURCE} ; do \ - if [ ! -s $(srcdir)/$$cmd.py ] ; then continue ; fi ; \ -- sed -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ -- ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ -+ sed \ -+ -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' \ -+ -e 's,/etc/mpd.conf,@sysconfdir@/mpd.conf,g' \ -+ ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ -+ ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ - ( rm -f $(DESTDIR)${bindir}/temp$$cmd.py >/dev/null 2>&1 || exit 0 ) ; \ - done - -@cd $(DESTDIR)${bindir} && rm -f mpd -@@ -210,7 +213,7 @@ - - mpich2-mpdroot.o: ${srcdir}/mpdroot.c ${srcdir}/mpdroot.h mpdconf.h - ${INSTALL} -m 644 ${srcdir}/mpdroot.c mpich2-mpdroot.c -- ${C_COMPILE} -c mpich2-mpdroot.c -+ ${C_COMPILE} -DSYSCONFDIR=\"@sysconfdir@\" -c mpich2-mpdroot.c - rm -f mpich2-mpdroot.c - - # A special alternate installation target when using multiple process managers -@@ -226,8 +229,11 @@ - fi - for cmd in ${PYTHON_SOURCE} ; do \ - if [ ! -s $(srcdir)/$$cmd.py ] ; then continue ; fi ; \ -- sed -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ -- ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ -+ sed \ -+ -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' \ -+ -e 's,/etc/mpd.conf,@sysconfdir@/mpd.conf,g' \ -+ ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ -+ ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ - ( rm -f $(DESTDIR)${bindir}/temp$$cmd.py >/dev/null 2>&1 || exit 0 ) ; \ - done - cd $(DESTDIR)${bindir} && rm -f mpd -diff -urN a/mpich2-1.0.8/src/pm/mpd/mpdlib.py b/mpich2-1.0.8/src/pm/mpd/mpdlib.py ---- a/mpich2-1.0.8/src/pm/mpd/mpdlib.py 2007-11-08 18:47:44.000000000 -0500 -+++ b/mpich2-1.0.8/src/pm/mpd/mpdlib.py 2009-04-01 16:35:08.899627072 -0400 -@@ -1341,11 +1341,11 @@ - if os.environ.has_key(k): - self[('env',k)] = os.environ[k] - def get_parms_from_rcfile(self,parmsToOverride,errIfMissingFile=0): -- if os.environ.has_key('MPD_CONF_FILE'): -+ if os.environ.has_key('MPD_CONF_FILE') and os.access(os.environ['MPD_CONF_FILE'], os.R_OK): - parmsRCFilename = os.environ['MPD_CONF_FILE'] - elif hasattr(os,'getuid') and os.getuid() == 0: # if ROOT - parmsRCFilename = os.path.abspath('/etc/mpd.conf') -- elif os.environ.has_key('HOME'): -+ elif os.environ.has_key('HOME') and os.access(os.path.join(os.environ['HOME'],'.mpd.conf'), os.R_OK): - parmsRCFilename = os.path.join(os.environ['HOME'],'.mpd.conf') - elif os.environ.has_key('HOMEPATH'): # e.g. win32 - parmsRCFilename = os.path.join(os.environ['HOMEPATH'],'.mpd.conf') -diff -urN a/mpich2-1.0.8/src/pm/mpd/mpdroot.c b/mpich2-1.0.8/src/pm/mpd/mpdroot.c ---- a/mpich2-1.0.8/src/pm/mpd/mpdroot.c 2007-11-02 18:50:19.000000000 -0400 -+++ b/mpich2-1.0.8/src/pm/mpd/mpdroot.c 2009-04-01 16:35:08.899627072 -0400 -@@ -19,6 +19,7 @@ - struct passwd *pwent; - char input_line[NAME_LEN+1], secretword[NAME_LEN+1]; - FILE *conf_file; -+ char *mpdconf_path = NULL; - - if ((pwent = getpwuid(getuid())) == NULL) /* for real id */ - { -@@ -26,10 +27,32 @@ - exit(-1); - } - -- conf_file = fopen("/etc/mpd.conf","r"); -+ /* -+ * We look for a readable mpd.conf in the following order. -+ * - MPD_CONF_FILE set in environment -+ * - .mpd.conf in the user's home directory -+ * - The system wide default in SYSCONFDIR/mpd.conf -+ */ -+ mpdconf_path = getenv("MPD_CONF_FILE"); -+ if ( ! (mpdconf_path && access( mpdconf_path, R_OK ) == 0) ){ -+ /* By far, the largest we'll need */ -+ size_t mpdconf_path_len = strlen(pwent->pw_dir) \ -+ + strlen(SYSCONFDIR) + strlen("/.mpd.conf"); -+ -+ mpdconf_path = (char*) malloc( sizeof(char) * mpdconf_path_len ); -+ if ( ! mpdconf_path ){ -+ fprintf( stderr, "%s: Failed to allocate a buffer for path to mpd.conf\n", argv[0]); -+ exit(-1); -+ } -+ snprintf( mpdconf_path, mpdconf_path_len-1, "%s/.mpd.conf", pwent->pw_dir ); -+ if ( access( mpdconf_path, R_OK ) != 0 ) -+ snprintf( mpdconf_path, mpdconf_path_len-1, "%s/mpd.conf", SYSCONFDIR ); -+ } -+ conf_file = fopen( mpdconf_path, "r"); -+ - if (conf_file == NULL) - { -- printf("%s: open failed for root's mpd conf file",argv[0]); -+ printf("%s: open failed for root's mpd conf file\n",argv[0]); - exit(-1); - } - secretword[0] = '\0'; diff --git a/sys-cluster/mpich2/files/mpich2-1.0.8-pkgconfig.patch b/sys-cluster/mpich2/files/mpich2-1.0.8-pkgconfig.patch deleted file mode 100644 index 1d3a456bd..000000000 --- a/sys-cluster/mpich2/files/mpich2-1.0.8-pkgconfig.patch +++ /dev/null @@ -1,17 +0,0 @@ ---- a/mpich2-1.0.8/src/pkgconfig/mpich2-ch3.pc.in 2008-11-04 20:36:38.931970012 -0500 -+++ b/mpich2-1.0.8/src/pkgconfig/mpich2-ch3.pc.in 2009-02-11 21:39:00.279871039 -0500 -@@ -1,8 +1,12 @@ - # this gives access to the mpich2 header files -+prefix=@prefix@ -+exec_prefix=@exec_prefix@ -+libdir=@libdir@ -+includedir=@includedir@ - - Name: mpich2 - Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. - Version: @VERSION@ - Requires: --Libs: -L@libdir@ -lmpich -lmpichcxx @LIBS@ --Cflags: @CFLAGS@ -I@includedir@ -DMPICH_IGNORE_CXX_SEEK -+Libs: -L${libdir} -lmpich -lmpichcxx @LIBS@ -+Cflags: @CFLAGS@ -I${includedir} -DMPICH_IGNORE_CXX_SEEK diff --git a/sys-cluster/mpich2/files/mpich2-1.2.1-fix-missing-libs.patch b/sys-cluster/mpich2/files/mpich2-1.2.1-fix-missing-libs.patch deleted file mode 100644 index 1f2ba04cf..000000000 --- a/sys-cluster/mpich2/files/mpich2-1.2.1-fix-missing-libs.patch +++ /dev/null @@ -1,33 +0,0 @@ -From 94707148dc8c33a1d3245e1f0dd7e28542f91e75 Mon Sep 17 00:00:00 2001 -From: Steve Arnold <nerdboy@gentoo.org> -Date: Wed, 4 Aug 2010 23:34:06 -0400 -Subject: [PATCH] Added missing library references for the f90 and C++ shared libraries - -Backport of upstream r6848. Directly modifies the Makefile.in to avoid -having to call simplemake to regenerate the entire build system. - -http://trac.mcs.anl.gov/projects/mpich2/changeset/6848 ---- - Makefile.in | 4 ++-- - 1 files changed, 2 insertions(+), 2 deletions(-) - -diff --git a/Makefile.in b/Makefile.in -index cbe4a93..d12babb 100644 ---- a/Makefile.in -+++ b/Makefile.in -@@ -143,10 +143,10 @@ lib/libf${MPILIBNAME}.@SHLIB_EXT@: lib/libf${MPILIBNAME}.la - (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o libf${MPILIBNAME}.la -rpath $(libdir) -L. -l$(MPILIBNAME) -ldflags "$(LDFLAGS)" $(LIBS)) - # Build the shared library from the shared object files - lib/lib${MPILIBNAME}f90.@SHLIB_EXT@: lib/lib${MPILIBNAME}f90.la -- (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o lib${MPILIBNAME}f90.la -rpath $(libdir) -ldflags "$(LDFLAGS)" $(LIBS)) -+ (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o lib${MPILIBNAME}f90.la -rpath $(libdir) -L. -l$(MPILIBNAME) -ldflags "$(LDFLAGS)" $(LIBS)) - # Build the shared library from the shared object files - lib/lib${MPICXXLIBNAME}.@SHLIB_EXT@: lib/lib${MPICXXLIBNAME}.la -- (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o lib${MPICXXLIBNAME}.la -rpath $(libdir) -ldflags "$(LDFLAGS)" $(LIBS)) -+ (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o lib${MPICXXLIBNAME}.la -rpath $(libdir) -L. -l$(MPILIBNAME) -ldflags "$(LDFLAGS)" $(LIBS)) - - # -------------------------------------------------------------------------- - .libstamp0: --- -1.7.1 - diff --git a/sys-cluster/mpich2/files/mpich2-1.3-libtvmpich2.so-respect-user-LDFLAGS.patch b/sys-cluster/mpich2/files/mpich2-1.3-libtvmpich2.so-respect-user-LDFLAGS.patch deleted file mode 100644 index 2a7ba2fb1..000000000 --- a/sys-cluster/mpich2/files/mpich2-1.3-libtvmpich2.so-respect-user-LDFLAGS.patch +++ /dev/null @@ -1,25 +0,0 @@ -From e51d6ec114dafc10a7eeeeb04c1dfdc7a7b7514c Mon Sep 17 00:00:00 2001 -From: Justin Bronder <jsbronder@gmail.com> -Date: Sat, 25 Sep 2010 12:04:35 -0400 -Subject: [PATCH] debugger: make libtvmpich2.so respect user LDFLAGS - ---- - src/mpi/debugger/Makefile.in | 2 +- - 1 files changed, 1 insertions(+), 1 deletions(-) - -diff --git a/src/mpi/debugger/Makefile.in b/src/mpi/debugger/Makefile.in -index 834079f..8723e6f 100644 ---- a/src/mpi/debugger/Makefile.in -+++ b/src/mpi/debugger/Makefile.in -@@ -172,7 +172,7 @@ SOURCEFILES = $(SOURCES) - # There is no static debugger interface library - # Force a custom target - ./libtvmpich2.@SHLIB_EXT@: ./libtvmpich2.la -- (cd . && $(CREATESHLIB) -libtype=@DBG_SHLIB_TYPE@ --mode=link -cc="@CC_SHL_DBG@" -clink="@C_LINK_SHL_DBG@" -o libtvmpich2.la -rpath $(libdir) ) -+ (cd . && $(CREATESHLIB) -libtype=@DBG_SHLIB_TYPE@ --mode=link -cc="@CC_SHL_DBG@" -clink="@C_LINK_SHL_DBG@" -o libtvmpich2.la -rpath $(libdir) -ldflags "$(LDFLAGS)" ) - - # - # We need to make sure that dbginit is compiled with -g, so --- -1.7.2.2 - diff --git a/sys-cluster/mpich2/files/mpich2-hvector.patch b/sys-cluster/mpich2/files/mpich2-hvector.patch deleted file mode 100644 index 9d67561e3..000000000 --- a/sys-cluster/mpich2/files/mpich2-hvector.patch +++ /dev/null @@ -1,63 +0,0 @@ ---- src/binding/f90/buildiface 2011-12-06 09:57:04.000000000 +0100 -+++ src/binding/f90/buildiface 2011-12-06 09:57:54.000000000 +0100 -@@ -117,9 +117,13 @@ - 'Type_hindexed-3' => 'int[]', - 'Type_indexed-2' => 'int[]', - 'Type_indexed-3' => 'int[]', -+ 'Type_hvector-3' => 'int', - 'Type_struct-2' => 'int[]', - 'Type_struct-3' => 'int[]', - 'Type_struct-4' => 'MPI_Datatype[]', -+ 'Type_extent-2' => 'int', -+ 'Type_lb-2' => 'int', -+ 'Type_ub-2' => 'int', - 'Waitall-2' => 'MPI_Request[]', - 'Waitall-3' => 'MPI_Status[]', - 'Waitany-2' => 'MPI_Request[]', ---- src/binding/f90/mpi_base.f90.in 2011-12-06 09:58:42.000000000 +0100 -+++ src/binding/f90/mpi_base.f90.in 2011-12-06 10:00:30.000000000 +0100 -@@ -15,9 +15,7 @@ - END SUBROUTINE MPI_COMM_FREE_KEYVAL - - SUBROUTINE MPI_TYPE_EXTENT(v0,v1,ierror) -- USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND -- INTEGER v0 -- INTEGER(KIND=MPI_ADDRESS_KIND) v1 -+ INTEGER v0, v1 - INTEGER ierror - END SUBROUTINE MPI_TYPE_EXTENT - -@@ -114,9 +112,7 @@ - END SUBROUTINE MPI_OP_COMMUTATIVE - - SUBROUTINE MPI_TYPE_LB(v0,v1,ierror) -- USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND -- INTEGER v0 -- INTEGER(KIND=MPI_ADDRESS_KIND) v1 -+ INTEGER v0, v1 - INTEGER ierror - END SUBROUTINE MPI_TYPE_LB - -@@ -562,9 +558,7 @@ - END SUBROUTINE MPI_TYPE_CREATE_RESIZED - - SUBROUTINE MPI_TYPE_UB(v0,v1,ierror) -- USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND -- INTEGER v0 -- INTEGER(KIND=MPI_ADDRESS_KIND) v1 -+ INTEGER v0, v1 - INTEGER ierror - END SUBROUTINE MPI_TYPE_UB - -@@ -822,10 +816,7 @@ - END SUBROUTINE MPI_GET_VERSION - - SUBROUTINE MPI_TYPE_HVECTOR(v0,v1,v2,v3,v4,ierror) -- USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND -- INTEGER v0, v1 -- INTEGER(KIND=MPI_ADDRESS_KIND) v2 -- INTEGER v3, v4 -+ INTEGER v0, v1, v2, v3, v4 - INTEGER ierror - END SUBROUTINE MPI_TYPE_HVECTOR - diff --git a/sys-cluster/mpich2/metadata.xml b/sys-cluster/mpich2/metadata.xml deleted file mode 100644 index 6cbe440fa..000000000 --- a/sys-cluster/mpich2/metadata.xml +++ /dev/null @@ -1,21 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>jsbronder@gentoo.org</email> - <name>Justin Bronder</name> - </maintainer> - <maintainer type="person"> - <email>balaji@mcs.anl.gov</email> - <name>Pavan Balaji</name> - <description>Upstream Contact</description> - </maintainer> - <maintainer type="project"> - <email>cluster@gentoo.org</email> - <name>Gentoo Cluster Project</name> - </maintainer> - <use> - <flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag> - <flag name="romio">Build the ROMIO MPI-IO component</flag> - </use> -</pkgmetadata> diff --git a/sys-cluster/mpich2/mpich2-1.5.ebuild b/sys-cluster/mpich2/mpich2-1.5.ebuild deleted file mode 100644 index 29288ffcc..000000000 --- a/sys-cluster/mpich2/mpich2-1.5.ebuild +++ /dev/null @@ -1,127 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED=fortran - -inherit fortran-2 mpi - -MY_PV=${PV/_/} -DESCRIPTION="A high performance and portable MPI implementation" -HOMEPAGE="http://www.mcs.anl.gov/research/projects/mpich2/index.php" -SRC_URI="http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarballs/${MY_PV}/${PN}-${MY_PV}.tar.gz" - -SLOT="0" -LICENSE="mpich2" -KEYWORDS="~amd64 ~x86" -IUSE="+cxx doc fortran mpi-threads romio threads" - -COMMON_DEPEND=" - dev-libs/libaio - sys-apps/hwloc - romio? ( net-fs/nfs-utils ) - $(mpi_imp_deplist)" - -DEPEND="${COMMON_DEPEND} - dev-lang/perl - sys-devel/libtool" - -RDEPEND="${COMMON_DEPEND}" - -S="${WORKDIR}"/${PN}-${MY_PV} - -pkg_setup() { - FORTRAN_STANDARD="77 90" - fortran-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.mpich2" - - if use mpi-threads && ! use threads; then - ewarn "mpi-threads requires threads, assuming that's what you want" - fi - - if mpi_classed; then - MPD_CONF_FILE_DIR=/etc/$(mpi_class) - else - MPD_CONF_FILE_DIR=/etc/${PN} - fi - -} - -src_prepare() { - # Using MPICH2LIB_LDFLAGS doesn't seem to full work. - sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ - src/packaging/pkgconfig/mpich2.pc.in \ - src/env/*.in \ - || die -} - -src_configure() { - local c="--enable-shared" - - # The configure statements can be somewhat confusing, as they - # don't all show up in the top level configure, however, they - # are picked up in the children directories. - - if use mpi-threads; then - # MPI-THREAD requries threading. - c="${c} --with-thread-package=pthreads" - c="${c} --enable-threads=runtime" - else - if use threads ; then - c="${c} --with-thread-package=pthreads" - else - c="${c} --with-thread-package=none" - fi - c="${c} --enable-threads=single" - fi - - if ! mpi_classed; then - c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" - c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" - else - c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" - fi - - export MPICH2LIB_CFLAGS=${CFLAGS} - export MPICH2LIB_CPPFLAGS=${CPPFLAGS} - export MPICH2LIB_CXXFLAGS=${CXXFLAGS} - export MPICH2LIB_FFLAGS=${FFLAGS} - export MPICH2LIB_FCFLAGS=${FCFLAGS} - export MPICH2LIB_LDFLAGS=${LDFLAGS} - unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS - - econf $(mpi_econf_args) ${c} \ - --with-pm=hydra \ - --disable-mpe \ - --disable-fast \ - --enable-smpcoll \ - --enable-versioning \ - $(use_enable romio) \ - $(use_enable cxx) \ - $(use_enable fortran f77) \ - $(use_enable fortran fc) -} - -src_test() { - emake -j1 check -} - -src_install() { - local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') - - default - - mpi_dodir /usr/share/doc/${PF} - mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES - mpi_newdoc src/pm/hydra/README README.hydra - if use romio; then - mpi_newdoc src/mpi/romio/README README.romio - fi - - if ! use doc; then - rm -rf "${d}"usr/share/doc/${PF}/www* - fi - - mpi_imp_add_eselect -} diff --git a/sys-cluster/mvapich2/Manifest b/sys-cluster/mvapich2/Manifest deleted file mode 100644 index 9c59e1fd9..000000000 --- a/sys-cluster/mvapich2/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST mvapich2-1.6.tgz 23239787 BLAKE2B 4cdd286d7a13f70b50ced6ac6cb3df51065225a33141410b699246f2b99d0f4b57611cd95f39806387c71d0f07257560c6f210ed4bbb8ce5fa5d2b8b7071db2c SHA512 4a4aac17742f347c4daed40a8360576ff4c644c549d4a3b364c7d2b1eada6aecc514b447b4613111e113d8f9be79b5101a999298cf89ff19ce63523a54702289 diff --git a/sys-cluster/mvapich2/files/eselect.mpi.mvapich2 b/sys-cluster/mvapich2/files/eselect.mpi.mvapich2 deleted file mode 100644 index d1d2131a1..000000000 --- a/sys-cluster/mvapich2/files/eselect.mpi.mvapich2 +++ /dev/null @@ -1,8 +0,0 @@ -MPI_CC=@ROOT@/usr/bin/mpicc -MPI_CXX=@ROOT@/usr/bin/mpic++ -MPI_F77=@ROOT@/usr/bin/mpif77 -MPI_F90=@ROOT@/usr/bin/mpif90 -MPI_BUILT_WITH=@BUILT_WITH@ -PATH=@ROOT@/usr/bin -MANPATH=@ROOT@/usr/share/man -LD_LIBRARY_PATH=@ROOT@/usr/@LIBDIR@ diff --git a/sys-cluster/mvapich2/metadata.xml b/sys-cluster/mvapich2/metadata.xml deleted file mode 100644 index 50e4975c9..000000000 --- a/sys-cluster/mvapich2/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>cluster@gentoo.org</email> - <name>Gentoo Cluster Project</name> - </maintainer> - <longdescription> -MVAPICH2 MPI-over-infiniband package auto-configured for OpenIB. -</longdescription> - <use> - <flag name="large-cluster">Automatically generated description for large-cluster</flag> - <flag name="medium-cluster">Automatically generated description for medium-cluster</flag> - <flag name="romio">Automatically generated description for romio</flag> - </use> -</pkgmetadata> diff --git a/sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild b/sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild deleted file mode 100644 index 8ed791509..000000000 --- a/sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild +++ /dev/null @@ -1,145 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit flag-o-matic fortran-2 mpi - -DESCRIPTION="MVAPICH2 MPI-over-infiniband package auto-configured for OpenIB" -HOMEPAGE="http://mvapich.cse.ohio-state.edu/" -SRC_URI="${HOMEPAGE}/download/mvapich2/mvapich2-${PV/_/-}.tgz" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~x86" -IUSE="debug fortran large-cluster medium-cluster romio threads" - -RDEPEND=" - sys-fabric/libibverbs:= - sys-fabric/libibumad:= - sys-fabric/libibmad:= - sys-fabric/librdmacm:= - " -DEPEND="${RDEPEND}" - -S="${WORKDIR}/mvapich2-${PV/_/-}" - -pkg_setup() { - fortran-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.mvapich2" - - if [ -z "${MVAPICH_HCA_TYPE}" ]; then - elog "${PN} needs to know which HCA it should optimize for. This is" - elog "passed to the ebuild with the variable, \${MVAPICH_HCA_TYPE}." - elog "Please choose one of: _MLX_PCI_EX_SDR_, _MLX_PCI_EX_DDR_," - elog "_MLX_PCI_X, _PATH_HT_, or _IBM_EHCA_." - elog "See make.mvapich2.detect in ${S} for more information." - die "MVAPICH_HCA_TYPE undefined" - fi - - case ${ARCH} in - amd64) - if grep Intel /proc/cpuinfo &>/dev/null; then - BUILD_ARCH=-D_EM64T_ - else - BUILD_ARCH=-D_X86_64_ - fi - ;; - x86) - BUILD_ARCH=-D_IA32_ - ;; - ia64) - BUILD_ARCH=-D_IA64_ - ;; - ppc64) - BUILD_ARCH=-D_PPC64_ - ;; - *) - die "unsupported architecture: ${ARCH}" - ;; - esac -} - -src_prepare() { - einfo "Disabling examples" - # Examples are always compiled with the default 'all' target. This - # causes problems when we don't build support for everything, including - # threads, mpe2, etc. So we're not going to build them. - sed -i 's:.*cd examples && ${MAKE} all.*::' Makefile.in || die -} - -src_configure() { - local c="--with-device=osu_ch3:mrail - --with-rdma=gen2 - --with-pm=mpd - $(use_enable romio) - --with-mpe=no" - - # TODO Shared libs should build with this, but they don't - # --enable-shared=gcc" - - local enable_srq - local vcluster=-D_SMALL_CLUSTER - - use large-cluster && vcluster=-D_LARGE_CLUSTER - use medium-cluster && vcluster=-D_MEDIUM_CLUSTER - [ "${MVAPICH_HCA_TYPE}" == "_MLX_PCI_X_" ] && enable_srq="-DSRQ" - - append-ldflags "-lrdmacm" - append-flags "-DADAPTIVE_RDMA_FAST_PATH -DRDMA_CM" - append-ldflags "-libverbs -libumad -libmad" - - append-flags "${BUILD_ARCH} -DUSE_INLINE -D_SMP_ -D_GNU_SOURCE" - append-flags "${enable_srq} -DUSE_HEADER_CACHING -DLAZY_MEM_UNREGISTER" - append-flags "-DONE_SIDED -D${MVAPICH_HCA_TYPE} ${vcluster}" - append-flags "-DMPID_USE_SEQUENCE_NUMBERS -DUSE_MPD_RING" - - use debug && c="${c} --enable-g=all --enable-debuginfo" - - if use threads; then - c="${c} --enable-threads=multiple --with-thread-package=pthreads" - append-flags "-pthread" - else - c="${c} --with-thread-package=none" - fi - - # enable f90 support for appropriate compilers - if use fortran; then - case "$(tc-getFC)" in - gfortran|ifort|f95) - c="${c} --enable-f77 --enable-f90";; - g77|f77|f2c) - c="${c} --enable-f77 --disable-f90";; - esac - else - c="${c} --disable-f77 --disable-f90" - fi - - sed -i \ - -e 's/ ${exec_prefix}/ ${DESTDIR}${exec_prefix}/' \ - -e 's/ ${libdir}/ ${DESTDIR}${libdir}/' \ - ${S/-beta2/}/Makefile.in || die - sed -i '/bindir/s/ ${bindir}/ ${DESTDIR}${bindir}/' ${S/-beta2/}/src/pm/mpd/Makefile.in || die - cd ${S/-beta2/} || die - - ! mpi_classed && c="${c} --sysconfdir=/etc/${PN}" - econf $(mpi_econf_args) ${c} -} - -src_install() { - emake DESTDIR="${D}" - mpi_dodoc CHANGES_MPICH2 COPYRIGHT COPYRIGHT_MVAPICH2 LICENSE.TXT \ - README* RELEASE_NOTES* - mpi_imp_add_eselect -} - -pkg_postinst() { - einfo "To allow normal users to use infiniband, it is necessary to" - einfo "increase the system limits on locked memory." - einfo "You must increase the kernel.shmmax sysctl value, and increase" - einfo "the memlock limits in /etc/security/limits.conf. i.e.:" - echo - einfo "echo 'kernel.shmmax = 512000000' >> /etc/sysctl.conf" - einfo "echo 512000000 > /proc/sys/kernel/shmmax" - einfo "echo -e '* soft memlock 500000\n* hard memlock 500000' > /etc/security/limits.conf" -} diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest deleted file mode 100644 index e871f22dc..000000000 --- a/sys-cluster/openmpi/Manifest +++ /dev/null @@ -1,7 +0,0 @@ -DIST openmpi-1.10.7.tar.bz2 13435131 BLAKE2B c1914e6842f59a4a21a27d015275eff00092e57784c4219f58424fbc69c6d9e58109aa1b2ff4e1e340ddc3b93f07d7271e728928772c66c271442e375c08315e SHA512 9c5470f9959ca37650a59e56fb8343c028422c709876ab9d25a411dd09a07cdde927c45d8f3db1ad524b1f2847fe799471d469fa1efee48f8018b2ff24427ecb -DIST openmpi-1.8.8.tar.bz2 13231433 BLAKE2B d196fd0bb08cfb0c86a29ae39015eb15e1465554e322c1ae039b61cee3a027ea0ba8d7fecd02e310309caec416147611a233861e464db4449da3b449387b1dca SHA512 8ca2e3ebb9d9ba0f33faba9bef76fe95293721b73619cbc18176611074a56c277e9ab6cae7fa6c87ace11f16151c1bc495b2a8dbc8ad064d5a8f89f5d431a660 -DIST openmpi-2.0.4.tar.bz2 8272983 BLAKE2B 7d0a392fbc8c896cdccefb9bf0ff83fbd8db8a42d17f06cb23ac88ba896e2c75e1b1b7a79559d0ce3c2b881f197f54ce1bd8967c889bafe2b97f95fb6b957501 SHA512 2cccb83847d44f6282ec24f7bc12ab51b84dc5ac1a2a919ef0761847ff7cdcb31cfb1f38dca33df7063a98c27a64575a108002716d207cbba3a54773b999e6c5 -DIST openmpi-2.1.6.tar.bz2 8324626 BLAKE2B 4aed4b397c0e0ead24ed5e9bbf45ee8f6719a7566d74405cccf119ddf535891ece91c04cbcad96be5a5d9805c620aa13a1b51c0edd67c049827357e7668008b9 SHA512 f552f47961e040476e7d2949cdd3e5a0b5ad74bea2b6532608117ec893473a160cd368251d1f439fd773f4846950857baf939e7b3586bac2a099495f7bc0e349 -DIST openmpi-3.0.4.tar.bz2 9308341 BLAKE2B 84536082f8415c9a0e41db01d96d64bffc463ca84de7730b25789dfee74e2205db5467739a42f13b0938d0934b45c948cd2be406290cdb4b196a5b51a5a3fc88 SHA512 c9db432e89d680e8857444395fee3544bebd4d1535f3e85a9435ca21f9848fad9f181e6be1ab8b93241b88723395535e3b3bdb2a5dd4128ed26df887b9a55810 -DIST openmpi-3.1.4.tar.bz2 9468371 BLAKE2B 70a93aa170086f43b2eb4f9b7c74673065bd309ae7a4c8f478a6db7523167fd1d25af19f87661149f6dd6033898ab47b86690a0421a01aa6f5a4d70478072e0e SHA512 5b4aafffc79fd85cb94a11a6e2fac563b142ac532191009eb35826c432ed3c391a6616e2ca92eacbf36137468eadb7c0f7ddc787034bc95c4214232ed5128338 -DIST openmpi-4.0.1.tar.bz2 9838152 BLAKE2B 75657940e37c23fbe88032f116588960c6bcf34c4928d77b45e8fde6fb51e814f521adb6c5155cb588fff9d1b382c2470873d90979a68598ff13e1aa205fc811 SHA512 09f35dc2e44b4f84aab9c5af9d81f90bbdb030e4d90800a5d3ffae88cb32b7faecc9bea0abb113da53c21f73e9d19db68f961f997bc47bdd28d83a87beee0731 diff --git a/sys-cluster/openmpi/files/eselect.mpi.openmpi b/sys-cluster/openmpi/files/eselect.mpi.openmpi deleted file mode 100644 index c1a9373f3..000000000 --- a/sys-cluster/openmpi/files/eselect.mpi.openmpi +++ /dev/null @@ -1,8 +0,0 @@ -MPI_CC=@ROOT@usr/bin/mpicc -MPI_CXX=@ROOT@usr/bin/mpic++ -MPI_F77=@ROOT@usr/bin/mpif77 -MPI_FC=@ROOT@usr/bin/mpif90 -CLASS_BASE_MPI_IMP=@BASE_IMP@ -PATH=@ROOT@usr/bin -MANPATH=@ROOT@usr/share/man -LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ diff --git a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch b/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch deleted file mode 100644 index 197430aee..000000000 --- a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch +++ /dev/null @@ -1,42 +0,0 @@ -From 3bd5897c7ca8ab61fb024957aeae891e204b3e3f Mon Sep 17 00:00:00 2001 -From: Justin Bronder <jsbronder@gmail.com> -Date: Mon, 1 Jul 2013 20:37:17 -0400 -Subject: [PATCH] hooks: disable malloc override inside of Gentoo sandbox - -As described in the comments in the source, Gentoo's own version of -fakeroot, sandbox, also runs into hangs when malloc is overridden. -Sandbox environments can easily be detected by looking for SANDBOX_PID -in the environment. When detected, employ the same fix used for -fakeroot. - -See https://bugs.gentoo.org/show_bug.cgi?id=462602 ---- - opal/mca/memory/linux/hooks.c | 11 +++++++++-- - 1 file changed, 9 insertions(+), 2 deletions(-) - -diff --git a/opal/mca/memory/linux/hooks.c b/opal/mca/memory/linux/hooks.c -index 6a1646f..5ded08c 100644 ---- a/opal/mca/memory/linux/hooks.c -+++ b/opal/mca/memory/linux/hooks.c -@@ -747,9 +747,16 @@ static void opal_memory_linux_malloc_init_hook(void) - "fakeroot" build environment that allocates memory during - stat() (see http://bugs.debian.org/531522). It may not be - necessary any more since we're using access(), not stat(). But -- we'll leave the check, anyway. */ -+ we'll leave the check, anyway. -+ -+ This is also an issue when using Gentoo's version of 'fakeroot', -+ sandbox v2.5. Sandbox environments can also be detected fairly -+ easily by looking for SANDBOX_ON. -+ */ -+ - if (getenv("FAKEROOTKEY") != NULL || -- getenv("FAKED_MODE") != NULL) { -+ getenv("FAKED_MODE") != NULL || -+ getenv("SANDBOX_ON") != NULL ) { - return; - } - --- -1.8.1.5 - diff --git a/sys-cluster/openmpi/files/openmpi-ltdl.patch b/sys-cluster/openmpi/files/openmpi-ltdl.patch deleted file mode 100644 index a288ea272..000000000 --- a/sys-cluster/openmpi/files/openmpi-ltdl.patch +++ /dev/null @@ -1,78 +0,0 @@ -diff -up openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl openmpi-1.6.3/ompi/debuggers/dlopen_test.c ---- openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl 2012-04-03 08:30:25.000000000 -0600 -+++ openmpi-1.6.3/ompi/debuggers/dlopen_test.c 2012-11-02 14:50:12.613702426 -0600 -@@ -13,7 +13,17 @@ - #include <string.h> - #include <stdlib.h> - --#include "opal/libltdl/ltdl.h" -+#if OPAL_WANT_LIBLTDL -+ #ifndef __WINDOWS__ -+ #if OPAL_LIBLTDL_INTERNAL -+ #include "opal/libltdl/ltdl.h" -+ #else -+ #include "ltdl.h" -+ #endif -+ #else -+ #include "ltdl.h" -+ #endif -+#endif - - static int do_test(void); - -diff -up openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl openmpi-1.6.3/ompi/debuggers/Makefile.am ---- openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl 2012-04-03 08:30:25.000000000 -0600 -+++ openmpi-1.6.3/ompi/debuggers/Makefile.am 2012-11-02 15:04:53.636926260 -0600 -@@ -47,7 +47,7 @@ headers = \ - - dlopen_test_SOURCES = dlopen_test.c - dlopen_test_CPPFLAGS = -I$(top_srcdir)/opal/libltdl --dlopen_test_LDADD = $(top_builddir)/opal/libltdl/libltdlc.la -+dlopen_test_LDADD = $(LIBLTDL) - - predefined_gap_test_SOURCES = predefined_gap_test.c - predefined_gap_test_LDFLAGS = $(WRAPPER_EXTRA_LDFLAGS) -diff -up openmpi-1.6.3/test/support/components.c.ltdl openmpi-1.6.3/test/support/components.c ---- openmpi-1.6.3/test/support/components.c.ltdl 2012-04-03 08:29:44.000000000 -0600 -+++ openmpi-1.6.3/test/support/components.c 2012-11-02 14:50:29.204705380 -0600 -@@ -24,7 +24,17 @@ - - #include "opal/constants.h" - #include "opal/mca/mca.h" --#include "opal/libltdl/ltdl.h" -+#if OPAL_WANT_LIBLTDL -+ #ifndef __WINDOWS__ -+ #if OPAL_LIBLTDL_INTERNAL -+ #include "opal/libltdl/ltdl.h" -+ #else -+ #include "ltdl.h" -+ #endif -+ #else -+ #include "ltdl.h" -+ #endif -+#endif - - #include "components.h" - -diff -up openmpi-1.6.3/test/support/components.h.ltdl openmpi-1.6.3/test/support/components.h ---- openmpi-1.6.3/test/support/components.h.ltdl 2012-04-03 08:29:44.000000000 -0600 -+++ openmpi-1.6.3/test/support/components.h 2012-11-02 14:50:22.409703519 -0600 -@@ -20,7 +20,17 @@ - #ifndef OMPI_SUPPORT_COMPONENTS_H - #define OMPI_SUPPORT_COMPONENTS_H - --#include "opal/libltdl/ltdl.h" -+#if OPAL_WANT_LIBLTDL -+ #ifndef __WINDOWS__ -+ #if OPAL_LIBLTDL_INTERNAL -+ #include "opal/libltdl/ltdl.h" -+ #else -+ #include "ltdl.h" -+ #endif -+ #else -+ #include "ltdl.h" -+ #endif -+#endif - #include "opal/mca/mca.h" - - BEGIN_C_DECLS diff --git a/sys-cluster/openmpi/files/openmpi-r24328.patch b/sys-cluster/openmpi/files/openmpi-r24328.patch deleted file mode 100644 index bbd689d3a..000000000 --- a/sys-cluster/openmpi/files/openmpi-r24328.patch +++ /dev/null @@ -1,54 +0,0 @@ -From cf054cd92dfac55f3920e805d01c11dcfc2cd4fa Mon Sep 17 00:00:00 2001 -From: jsquyres <jsquyres@cisco.com> -Date: Mon, 28 Mar 2011 12:44:06 -0400 -Subject: [PATCH] Fix some fairly-important typos (!) - -Upstream commit r24328. ---- - test/datatype/ddt_lib.c | 2 +- - test/datatype/ddt_raw.c | 2 +- - test/datatype/opal_ddt_lib.c | 2 +- - 3 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/test/datatype/ddt_lib.c b/test/datatype/ddt_lib.c -index 015419d..c349384 100644 ---- a/test/datatype/ddt_lib.c -+++ b/test/datatype/ddt_lib.c -@@ -209,7 +209,7 @@ int mpich_typeub2( void ) - - int mpich_typeub3( void ) - { -- int blocklen[2], err = 0, idisp[3]; -+ int blocklen[3], err = 0, idisp[3]; - size_t sz; - MPI_Aint disp[3], lb, ub, ex; - ompi_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5; -diff --git a/test/datatype/ddt_raw.c b/test/datatype/ddt_raw.c -index eea9004..7effe65 100644 ---- a/test/datatype/ddt_raw.c -+++ b/test/datatype/ddt_raw.c -@@ -45,7 +45,7 @@ static int test_upper( unsigned int length ) - { - ompi_datatype_t *pdt; - opal_convertor_t * pConv; -- int rc; -+ int rc = OMPI_SUCCESS; - unsigned int i, iov_count, split_chunk, total_length; - size_t max_data; - struct iovec iov[5]; -diff --git a/test/datatype/opal_ddt_lib.c b/test/datatype/opal_ddt_lib.c -index e05bb06..dffd86c 100644 ---- a/test/datatype/opal_ddt_lib.c -+++ b/test/datatype/opal_ddt_lib.c -@@ -759,7 +759,7 @@ int mpich_typeub2( void ) - - int mpich_typeub3( void ) - { -- int blocklen[2], err = 0, idisp[3]; -+ int blocklen[3], err = 0, idisp[3]; - size_t sz; - OPAL_PTRDIFF_TYPE disp[3], lb, ub, ex; - opal_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5; --- -1.7.3.4 - diff --git a/sys-cluster/openmpi/metadata.xml b/sys-cluster/openmpi/metadata.xml deleted file mode 100644 index 08b693bf5..000000000 --- a/sys-cluster/openmpi/metadata.xml +++ /dev/null @@ -1,21 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>jsbronder@gentoo.org</email> - </maintainer> - <maintainer type="project"> - <email>cluster@gentoo.org</email> - <name>Gentoo Cluster Project</name> - </maintainer> - <use> - <flag name="cma">Enable the CMA (Cross Memory Attach) MCA</flag> - <flag name="cuda">Add GPU direct support</flag> - <flag name="heterogeneous">Enable features required for heterogeneous -platform support</flag> - <flag name="romio">Build the ROMIO MPI-IO component</flag> - <flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag> - <flag name="numa">Enable numactl to allow binding processes to CPUs</flag> - <flag name="vt">Enable bundled VampirTrace support</flag> - </use> -</pkgmetadata> diff --git a/sys-cluster/openmpi/openmpi-1.10.7.ebuild b/sys-cluster/openmpi/openmpi-1.10.7.ebuild deleted file mode 100644 index de982dc42..000000000 --- a/sys-cluster/openmpi/openmpi-1.10.7.ebuild +++ /dev/null @@ -1,194 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi - -MY_P=${P/-mpi} -S=${WORKDIR}/${MY_P} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem - openmpi_fabrics_psm" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_connectx-xrc - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl - openmpi_ofed_features_failover" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="http://www.open-mpi.org" -SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux" -IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" - -MPI_UNCLASSED_DEP_STR=" - !sys-cluster/pmix - vt? ( - !dev-libs/libotf - !app-text/lcdf-typetools - )" - -CDEPEND=" - >=dev-libs/libevent-2.0.21[${MULTILIB_USEDEP}] - dev-libs/libltdl:0[${MULTILIB_USEDEP}] - <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] - >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] - cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) - elibc_FreeBSD? ( dev-libs/libexecinfo ) - openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) - $(mpi_imp_deplist)" - -RDEPEND="${CDEPEND} - java? ( >=virtual/jre-1.6 )" - -DEPEND="${CDEPEND} - java? ( >=virtual/jdk-1.6 )" - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpi.h - /usr/include/openmpi/ompi/mpi/java/mpiJava.h -) - -pkg_setup() { - fortran-2_pkg_setup - java-pkg-opt-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.openmpi" - - if use mpi-threads; then - ewarn - ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" - ewarn "default and officially unsupported by upstream." - ewarn "You may stop now and set USE=-mpi-threads" - ewarn - fi - - elog - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - elog -} - -src_prepare() { - default - - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - if use threads; then - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf || die - fi -} - -multilib_src_configure() { - if use java; then - # We must always build with the right -source and -target - # flags. Passing flags to javac isn't explicitly supported here - # but we can cheat by overriding the configure test for javac. - export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" - fi - - ECONF_SOURCE=${S} econf $(mpi_econf_args) \ - --sysconfdir="${EPREFIX}/etc/${PN}" \ - --enable-pretty-print-stacktrace \ - --enable-orterun-prefix-by-default \ - --with-hwloc="${EPREFIX}/usr" \ - --with-libltdl="${EPREFIX}/usr" \ - --enable-mpi-fortran=$(usex fortran all no) \ - $(usex !vt --enable-contrib-no-build=vt "") \ - $(use_enable cxx mpi-cxx) \ - $(use_with cma) \ - $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ - $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ - $(use_enable ipv6) \ - $(multilib_native_use_enable java) \ - $(multilib_native_use_enable java mpi-java) \ - $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ - $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ - $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ - $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ - $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ - $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ - $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ - $(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \ - $(multilib_native_use_with openmpi_rm_pbs tm) \ - $(multilib_native_use_with openmpi_rm_slurm slurm) -} - -multilib_src_test() { - # Doesn't work with the default src_test as the dry run (-n) fails. - emake -j1 check -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/bin/mpif* || die - fi -} - -multilib_src_install_all() { - # From USE=vt see #359917 - rm -rf "${ED}"/$(mpi_root)/usr/share/libtool &> /dev/null - - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die - fi - - # Avoid collisions with libevent - rm -rf "${ED}"/$(mpi_root)/usr/include/event2 &> /dev/null || die - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}" -name '*.la' -delete || die - - if use java; then - local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar - java-pkg_dojar "${mpi_jar}" - # We don't want to install the jar file twice - # so let's clean after ourselves. - rm "${mpi_jar}" || die - fi - - mpi_dodoc README AUTHORS NEWS VERSION - mpi_imp_add_eselect -} diff --git a/sys-cluster/openmpi/openmpi-1.8.8.ebuild b/sys-cluster/openmpi/openmpi-1.8.8.ebuild deleted file mode 100644 index b7fa7fabd..000000000 --- a/sys-cluster/openmpi/openmpi-1.8.8.ebuild +++ /dev/null @@ -1,180 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -FORTRAN_NEEDED=fortran - -inherit cuda eutils flag-o-matic fortran-2 java-pkg-opt-2 multilib mpi toolchain-funcs versionator - -MY_P=${P/-mpi} -S=${WORKDIR}/${MY_P} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem - openmpi_fabrics_open-mx - openmpi_fabrics_psm" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_connectx-xrc - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl - openmpi_ofed_features_failover" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="http://www.open-mpi.org" -SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux" -IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" - -MPI_UNCLASSED_DEP_STR=" - !sys-cluster/pmix - vt? ( - !dev-libs/libotf - !app-text/lcdf-typetools - )" - -RDEPEND=" - dev-libs/libevent - dev-libs/libltdl:0 - <sys-apps/hwloc-2[numa?] - sys-libs/zlib - cuda? ( dev-util/nvidia-cuda-toolkit ) - elibc_FreeBSD? ( dev-libs/libexecinfo ) - java? ( >=virtual/jre-1.6:* ) - openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) - openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) - $(mpi_imp_deplist)" -DEPEND="${RDEPEND} - java? ( >=virtual/jdk-1.6 )" - -pkg_setup() { - fortran-2_pkg_setup - java-pkg-opt-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.openmpi" - - if use mpi-threads; then - echo - ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" - ewarn "default and officially unsupported by upstream." - ewarn "You may stop now and set USE=-mpi-threads" - echo - fi - - echo - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - echo -} - -src_prepare() { - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - if use threads; then - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf - fi -} - -src_configure() { - local myconf=( - --sysconfdir="${EPREFIX}/etc/${PN}" - --enable-pretty-print-stacktrace - --enable-orterun-prefix-by-default - --with-hwloc="${EPREFIX}/usr" - --with-libltdl="${EPREFIX}/usr" - ) - - if use fortran; then - myconf+=(--enable-mpi-fortran=all) - else - myconf+=(--enable-mpi-fortran=no) - fi - - if use java; then - # We must always build with the right -source and -target - # flags. Passing flags to javac isn't explicitly supported here - # but we can cheat by overriding the configure test for javac. - export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" - fi - - ! use vt && myconf+=(--enable-contrib-no-build=vt) - - econf $(mpi_econf_args) "${myconf[@]}" \ - $(use_enable cxx mpi-cxx) \ - $(use_with cma) \ - $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ - $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ - $(use_enable ipv6) \ - $(use_enable java) \ - $(use_enable java mpi-java) \ - $(use_enable mpi-threads mpi-thread-multiple) \ - $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ - $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ - $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ - $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ - $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ - $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ - $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ - $(use_enable openmpi_ofed_features_udcm openib-udcm) \ - $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ - $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ - $(use_with openmpi_rm_pbs tm) \ - $(use_with openmpi_rm_slurm slurm) -} - -src_install () { - default - - # From USE=vt see #359917 - rm "${ED}"/$(mpi_root)/usr/share/libtool &> /dev/null - - # Avoid collisions with libevent - rm -rf "${ED}"/$(mpi_root)/usr/include/event2 &> /dev/null - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}"/$(mpi_root)/usr/$(get_libdir)/ -type f -name '*.la' -delete - - if use java; then - local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar - java-pkg_dojar "${mpi_jar}" - # We don't want to install the jar file twice - # so let's clean after ourselves. - rm "${mpi_jar}" || die - fi - - mpi_dodoc README AUTHORS NEWS VERSION - mpi_imp_add_eselect -} - -src_test() { - # Doesn't work with the default src_test as the dry run (-n) fails. - emake -j1 check -} diff --git a/sys-cluster/openmpi/openmpi-2.0.4.ebuild b/sys-cluster/openmpi/openmpi-2.0.4.ebuild deleted file mode 100644 index bfd34c9b0..000000000 --- a/sys-cluster/openmpi/openmpi-2.0.4.ebuild +++ /dev/null @@ -1,177 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi - -MY_P=${P/-mpi} -S=${WORKDIR}/${MY_P} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem - openmpi_fabrics_psm" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_connectx-xrc - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl - openmpi_ofed_features_failover" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="http://www.open-mpi.org" -SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux" -IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" - -MPI_UNCLASSED_DEP_STR=" - !sys-cluster/pmix -" - -CDEPEND=" - >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] - dev-libs/libltdl:0[${MULTILIB_USEDEP}] - <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] - >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] - cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) - elibc_FreeBSD? ( dev-libs/libexecinfo ) - openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) - $(mpi_imp_deplist)" - -RDEPEND="${CDEPEND} - java? ( >=virtual/jre-1.6 )" - -DEPEND="${CDEPEND} - java? ( >=virtual/jdk-1.6 )" - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpi.h - /usr/include/openmpi/ompi/mpi/java/mpiJava.h -) - -pkg_setup() { - fortran-2_pkg_setup - java-pkg-opt-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.openmpi" - - elog - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - elog -} - -src_prepare() { - default - - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - if use threads; then - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf || die - fi -} - -multilib_src_configure() { - if use java; then - # We must always build with the right -source and -target - # flags. Passing flags to javac isn't explicitly supported here - # but we can cheat by overriding the configure test for javac. - export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" - fi - - ECONF_SOURCE=${S} econf $(mpi_econf_args) \ - --sysconfdir="${EPREFIX}/etc/${PN}" \ - --enable-pretty-print-stacktrace \ - --enable-orterun-prefix-by-default \ - --with-hwloc="${EPREFIX}/usr" \ - --with-libltdl="${EPREFIX}/usr" \ - --with-libevent="${EPREFIX}/usr" \ - --enable-mpi-fortran=$(usex fortran all no) \ - $(use_enable cxx mpi-cxx) \ - $(use_with cma) \ - $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ - $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ - $(use_enable ipv6) \ - $(multilib_native_use_enable java) \ - $(multilib_native_use_enable java mpi-java) \ - $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ - $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ - $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ - $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ - $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ - $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ - $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ - $(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \ - $(multilib_native_use_with openmpi_rm_pbs tm) \ - $(multilib_native_use_with openmpi_rm_slurm slurm) -} - -multilib_src_test() { - # Doesn't work with the default src_test as the dry run (-n) fails. - emake -j1 check -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/bin/mpif* || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die - fi - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}" -name '*.la' -delete || die - - if use java; then - local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar - java-pkg_dojar "${mpi_jar}" - # We don't want to install the jar file twice - # so let's clean after ourselves. - rm "${mpi_jar}" || die - fi - - mpi_dodoc README AUTHORS NEWS VERSION - mpi_imp_add_eselect -} diff --git a/sys-cluster/openmpi/openmpi-2.1.6.ebuild b/sys-cluster/openmpi/openmpi-2.1.6.ebuild deleted file mode 100644 index f616b2844..000000000 --- a/sys-cluster/openmpi/openmpi-2.1.6.ebuild +++ /dev/null @@ -1,176 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi - -MY_P=${P/-mpi} -S=${WORKDIR}/${MY_P} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem - openmpi_fabrics_psm" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="http://www.open-mpi.org" -SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux" -IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" - -MPI_UNCLASSED_DEP_STR=" - !sys-cluster/pmix -" - -CDEPEND=" - >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] - dev-libs/libltdl:0[${MULTILIB_USEDEP}] - <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] - >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] - cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) - elibc_FreeBSD? ( dev-libs/libexecinfo ) - openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) - $(mpi_imp_deplist)" - -RDEPEND="${CDEPEND} - java? ( >=virtual/jre-1.6 )" - -DEPEND="${CDEPEND} - java? ( >=virtual/jdk-1.6 )" - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpi.h - /usr/include/openmpi/ompi/mpi/java/mpiJava.h -) - -pkg_setup() { - fortran-2_pkg_setup - java-pkg-opt-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.openmpi" - - elog - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - elog -} - -src_prepare() { - default - - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - if use threads; then - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf || die - fi -} - -multilib_src_configure() { - if use java; then - # We must always build with the right -source and -target - # flags. Passing flags to javac isn't explicitly supported here - # but we can cheat by overriding the configure test for javac. - export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" - fi - - ECONF_SOURCE=${S} econf $(mpi_econf_args) \ - --sysconfdir="${EPREFIX}/etc/${PN}" \ - --enable-pretty-print-stacktrace \ - --enable-orterun-prefix-by-default \ - --with-hwloc="${EPREFIX}/usr" \ - --with-libltdl="${EPREFIX}/usr" \ - --with-libevent="${EPREFIX}/usr" \ - --enable-mpi-fortran=$(usex fortran all no) \ - $(use_enable cxx mpi-cxx) \ - $(use_with cma) \ - $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ - $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ - $(use_enable ipv6) \ - $(multilib_native_use_enable java) \ - $(multilib_native_use_enable java mpi-java) \ - $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ - $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ - $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ - $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ - $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ - $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ - $(multilib_native_use_with openmpi_rm_pbs tm) \ - $(multilib_native_use_with openmpi_rm_slurm slurm) -} - -multilib_src_test() { - # Doesn't work with the default src_test as the dry run (-n) fails. - emake -j1 check -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm \ - "${ED}"/$(mpi_root)/usr/include/mpif* \ - "${ED}"/$(mpi_root)/usr/bin/mpif* \ - "${ED}"/$(mpi_root)/usr/bin/oshfort \ - "${ED}"/$(mpi_root)/usr/bin/shmemfort \ - || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die - fi - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}" -name '*.la' -delete || die - - if use java; then - local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar - java-pkg_dojar "${mpi_jar}" - # We don't want to install the jar file twice - # so let's clean after ourselves. - rm "${mpi_jar}" || die - fi - - mpi_dodoc README AUTHORS NEWS VERSION - mpi_imp_add_eselect -} diff --git a/sys-cluster/openmpi/openmpi-3.0.4.ebuild b/sys-cluster/openmpi/openmpi-3.0.4.ebuild deleted file mode 100644 index bcb60baa5..000000000 --- a/sys-cluster/openmpi/openmpi-3.0.4.ebuild +++ /dev/null @@ -1,173 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi - -MY_P=${P/-mpi} -S=${WORKDIR}/${MY_P} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem - openmpi_fabrics_psm" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="http://www.open-mpi.org" -SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux" -IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java numa romio - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" - -MPI_UNCLASSED_DEP_STR=" - !sys-cluster/pmix -" - -CDEPEND=" - >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] - dev-libs/libltdl:0[${MULTILIB_USEDEP}] - <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] - >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] - cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) - elibc_FreeBSD? ( dev-libs/libexecinfo ) - openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) - $(mpi_imp_deplist)" - -RDEPEND="${CDEPEND} - java? ( >=virtual/jre-1.6 )" - -DEPEND="${CDEPEND} - java? ( >=virtual/jdk-1.6 )" - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpi.h - /usr/include/openmpi/ompi/mpi/java/mpiJava.h -) - -pkg_setup() { - fortran-2_pkg_setup - java-pkg-opt-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.openmpi" - - elog - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - elog -} - -src_prepare() { - default - - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf || die -} - -multilib_src_configure() { - if use java; then - # We must always build with the right -source and -target - # flags. Passing flags to javac isn't explicitly supported here - # but we can cheat by overriding the configure test for javac. - export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" - fi - - ECONF_SOURCE=${S} econf $(mpi_econf_args) \ - --sysconfdir="${EPREFIX}/etc/${PN}" \ - --enable-pretty-print-stacktrace \ - --enable-orterun-prefix-by-default \ - --with-hwloc="${EPREFIX}/usr" \ - --with-libltdl="${EPREFIX}/usr" \ - --with-libevent="${EPREFIX}/usr" \ - --enable-mpi-fortran=$(usex fortran all no) \ - $(use_enable cxx mpi-cxx) \ - $(use_with cma) \ - $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ - $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ - $(use_enable ipv6) \ - $(multilib_native_use_enable java) \ - $(multilib_native_use_enable java mpi-java) \ - $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ - $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ - $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ - $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ - $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ - $(multilib_native_use_with openmpi_rm_pbs tm) \ - $(multilib_native_use_with openmpi_rm_slurm slurm) -} - -multilib_src_test() { - # Doesn't work with the default src_test as the dry run (-n) fails. - emake -j1 check -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm \ - "${ED}"/$(mpi_root)/usr/include/mpif* \ - "${ED}"/$(mpi_root)/usr/bin/mpif* \ - "${ED}"/$(mpi_root)/usr/bin/oshfort \ - "${ED}"/$(mpi_root)/usr/bin/shmemfort \ - || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die - fi - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}" -name '*.la' -delete || die - - if use java; then - local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar - java-pkg_dojar "${mpi_jar}" - # We don't want to install the jar file twice - # so let's clean after ourselves. - rm "${mpi_jar}" || die - fi - - mpi_dodoc README AUTHORS NEWS VERSION - mpi_imp_add_eselect -} diff --git a/sys-cluster/openmpi/openmpi-3.1.4.ebuild b/sys-cluster/openmpi/openmpi-3.1.4.ebuild deleted file mode 100644 index bcb60baa5..000000000 --- a/sys-cluster/openmpi/openmpi-3.1.4.ebuild +++ /dev/null @@ -1,173 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi - -MY_P=${P/-mpi} -S=${WORKDIR}/${MY_P} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem - openmpi_fabrics_psm" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="http://www.open-mpi.org" -SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux" -IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java numa romio - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" - -MPI_UNCLASSED_DEP_STR=" - !sys-cluster/pmix -" - -CDEPEND=" - >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] - dev-libs/libltdl:0[${MULTILIB_USEDEP}] - <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] - >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] - cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) - elibc_FreeBSD? ( dev-libs/libexecinfo ) - openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) - $(mpi_imp_deplist)" - -RDEPEND="${CDEPEND} - java? ( >=virtual/jre-1.6 )" - -DEPEND="${CDEPEND} - java? ( >=virtual/jdk-1.6 )" - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpi.h - /usr/include/openmpi/ompi/mpi/java/mpiJava.h -) - -pkg_setup() { - fortran-2_pkg_setup - java-pkg-opt-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.openmpi" - - elog - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - elog -} - -src_prepare() { - default - - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf || die -} - -multilib_src_configure() { - if use java; then - # We must always build with the right -source and -target - # flags. Passing flags to javac isn't explicitly supported here - # but we can cheat by overriding the configure test for javac. - export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" - fi - - ECONF_SOURCE=${S} econf $(mpi_econf_args) \ - --sysconfdir="${EPREFIX}/etc/${PN}" \ - --enable-pretty-print-stacktrace \ - --enable-orterun-prefix-by-default \ - --with-hwloc="${EPREFIX}/usr" \ - --with-libltdl="${EPREFIX}/usr" \ - --with-libevent="${EPREFIX}/usr" \ - --enable-mpi-fortran=$(usex fortran all no) \ - $(use_enable cxx mpi-cxx) \ - $(use_with cma) \ - $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ - $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ - $(use_enable ipv6) \ - $(multilib_native_use_enable java) \ - $(multilib_native_use_enable java mpi-java) \ - $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ - $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ - $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ - $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ - $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ - $(multilib_native_use_with openmpi_rm_pbs tm) \ - $(multilib_native_use_with openmpi_rm_slurm slurm) -} - -multilib_src_test() { - # Doesn't work with the default src_test as the dry run (-n) fails. - emake -j1 check -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm \ - "${ED}"/$(mpi_root)/usr/include/mpif* \ - "${ED}"/$(mpi_root)/usr/bin/mpif* \ - "${ED}"/$(mpi_root)/usr/bin/oshfort \ - "${ED}"/$(mpi_root)/usr/bin/shmemfort \ - || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die - fi - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}" -name '*.la' -delete || die - - if use java; then - local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar - java-pkg_dojar "${mpi_jar}" - # We don't want to install the jar file twice - # so let's clean after ourselves. - rm "${mpi_jar}" || die - fi - - mpi_dodoc README AUTHORS NEWS VERSION - mpi_imp_add_eselect -} diff --git a/sys-cluster/openmpi/openmpi-4.0.1-r2.ebuild b/sys-cluster/openmpi/openmpi-4.0.1-r2.ebuild deleted file mode 100644 index 489306f51..000000000 --- a/sys-cluster/openmpi/openmpi-4.0.1-r2.ebuild +++ /dev/null @@ -1,172 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit cuda eapi7-ver flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib multilib-minimal mpi - -MY_P=${P/-mpi} -S=${WORKDIR}/${MY_P} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem - openmpi_fabrics_psm" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="http://www.open-mpi.org" -SRC_URI="http://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux" -IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java romio - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" - -MPI_UNCLASSED_DEP_STR=" - !sys-cluster/pmix -" - -CDEPEND=" - >=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads] - dev-libs/libltdl:0[${MULTILIB_USEDEP}] - >=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP}] - >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] - cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) - elibc_FreeBSD? ( dev-libs/libexecinfo ) - openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) - $(mpi_imp_deplist)" - -RDEPEND="${CDEPEND} - java? ( >=virtual/jre-1.6 )" - -DEPEND="${CDEPEND} - java? ( >=virtual/jdk-1.6 )" - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpi.h - /usr/include/openmpi/ompi/mpi/java/mpiJava.h -) - -pkg_setup() { - fortran-2_pkg_setup - java-pkg-opt-2_pkg_setup - MPI_ESELECT_FILE="eselect.mpi.openmpi" - - elog - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - elog -} - -src_prepare() { - default - - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf || die -} - -multilib_src_configure() { - if use java; then - # We must always build with the right -source and -target - # flags. Passing flags to javac isn't explicitly supported here - # but we can cheat by overriding the configure test for javac. - export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" - fi - - ECONF_SOURCE=${S} econf $(mpi_econf_args) \ - --sysconfdir="${EPREFIX}/etc/${PN}" \ - --enable-pretty-print-stacktrace \ - --enable-orterun-prefix-by-default \ - --with-hwloc="${EPREFIX}/usr" \ - --with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" \ - --with-libltdl="${EPREFIX}/usr" \ - --with-libevent="${EPREFIX}/usr" \ - --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" \ - --enable-mpi-fortran=$(usex fortran all no) \ - $(use_enable cxx mpi-cxx) \ - $(use_with cma) \ - $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \ - $(use_enable romio io-romio) \ - $(use_enable heterogeneous) \ - $(use_enable ipv6) \ - $(multilib_native_use_enable java mpi-java) \ - $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ - $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ - $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ - $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ - $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ - $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ - $(multilib_native_use_with openmpi_rm_pbs tm) \ - $(multilib_native_use_with openmpi_rm_slurm slurm) -} - -multilib_src_test() { - # Doesn't work with the default src_test as the dry run (-n) fails. - emake -j1 check -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm \ - "${ED}"/$(mpi_root)/usr/include/mpif* \ - "${ED}"/$(mpi_root)/usr/bin/mpif* \ - || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die - fi - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}" -name '*.la' -delete || die - - if use java; then - local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar - java-pkg_dojar "${mpi_jar}" - # We don't want to install the jar file twice - # so let's clean after ourselves. - rm "${mpi_jar}" || die - fi - - mpi_dodoc README AUTHORS NEWS VERSION - mpi_imp_add_eselect -} |