diff options
| -rw-r--r-- | sci-biology/bcftools/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/bcftools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.1.ebuild | 26 | ||||
| -rw-r--r-- | sci-biology/bcftools/metadata.xml | 9 |
4 files changed, 0 insertions, 46 deletions
diff --git a/sci-biology/bcftools/ChangeLog b/sci-biology/bcftools/ChangeLog deleted file mode 100644 index 4e0a781f2..000000000 --- a/sci-biology/bcftools/ChangeLog +++ /dev/null @@ -1,10 +0,0 @@ -# ChangeLog for sci-biology/bcftools -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*bcftools-1.1 (14 Jan 2015) - - 14 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> - +bcftools-1.1.ebuild, +metadata.xml: - sci-biology/bcftools: new package: compiles against bundled sci- - libs/htslib-1.1 but does not install it diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest deleted file mode 100644 index d9fae6d7b..000000000 --- a/sci-biology/bcftools/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST bcftools-1.1.tar.bz2 1197465 SHA256 6d0d1610e942a1c0388f9ae8402e1508eb6451c58929ac5200c89ed572fdd65e SHA512 15892de6fd417da8efd8fc9ab20578113d3b764738bcbefc88ac309dd953e39b844d4d93fce6f19b4e63f3a8b28d2d2574041b414e71ae16842224593032f522 WHIRLPOOL 7714856354c7544eba305e01005b6a75673c6786c78d360d6ee4c279cdad3c22bdef95eb6f5f558b30e65ded8f41d79ceccf1bf2c5ae6c49c8eb146f2332c613 diff --git a/sci-biology/bcftools/bcftools-1.1.ebuild b/sci-biology/bcftools/bcftools-1.1.ebuild deleted file mode 100644 index e3f446fe1..000000000 --- a/sci-biology/bcftools/bcftools-1.1.ebuild +++ /dev/null @@ -1,26 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=5 - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org/bcftools_release_notes" -SRC_URI="http://sourceforge.net/projects/samtools/files/samtools/1.1/bcftools-1.1.tar.bz2" - -LICENSE="MIT-GRL" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND="sci-libs/htslib - dev-lang/perl" -RDEPEND="${DEPEND}" - -src_prepare(){ - sed -e 's#prefix = /usr/local#prefix = /usr#' \ - -e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i Makefile - - sed -e 's#prefix = /usr/local#prefix = /usr#' \ - -e 's@CFLAGS = -g -Wall -Wc++-compat -O2@#CFLAGS = -g -Wall -Wc++-compat -O2@' -i htslib-1.1/Makefile -} diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml deleted file mode 100644 index 2bc893037..000000000 --- a/sci-biology/bcftools/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <herd>sci-biology</herd> - <maintainer> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> -</pkgmetadata> |