diff options
| -rw-r--r-- | media-gfx/brlcad/brlcad-7.22.0.ebuild | 2 | ||||
| -rw-r--r-- | media-gfx/brlcad/brlcad-7.24.0.ebuild | 2 | ||||
| -rw-r--r-- | media-gfx/brlcad/brlcad-7.24.2.ebuild | 2 | ||||
| -rw-r--r-- | media-gfx/brlcad/brlcad-9999.ebuild | 2 | ||||
| -rw-r--r-- | sci-biology/apollo/apollo-9999.ebuild | 2 | ||||
| -rw-r--r-- | sci-biology/consed/consed-29.ebuild | 2 | ||||
| -rw-r--r-- | sci-biology/pileup/pileup-0.6.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild | 9 | ||||
| -rw-r--r-- | sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild | 2 | ||||
| -rw-r--r-- | sci-biology/trf/trf-4.07b.ebuild | 2 | ||||
| -rw-r--r-- | sci-libs/med/med-2.3.6.ebuild | 8 |
11 files changed, 19 insertions, 18 deletions
diff --git a/media-gfx/brlcad/brlcad-7.22.0.ebuild b/media-gfx/brlcad/brlcad-7.22.0.ebuild index 98fb81098..da291020e 100644 --- a/media-gfx/brlcad/brlcad-7.22.0.ebuild +++ b/media-gfx/brlcad/brlcad-7.22.0.ebuild @@ -105,7 +105,7 @@ src_install() { dodoc AUTHORS NEWS README HACKING TODO BUGS ChangeLog echo "PATH=\"${BRLCAD_DIR}/bin\"" > 99brlcad echo "MANPATH=\"${BRLCAD_DIR}/man\"" >> 99brlcad - doenvd 99brlcad || die + doenvd 99brlcad newicon misc/macosx/Resources/ReadMe.rtfd/brlcad_logo_tiny.png brlcad.png make_desktop_entry mged "BRL-CAD" brlcad "Graphics;Engineering" } diff --git a/media-gfx/brlcad/brlcad-7.24.0.ebuild b/media-gfx/brlcad/brlcad-7.24.0.ebuild index 1933ed4c9..d8781b479 100644 --- a/media-gfx/brlcad/brlcad-7.24.0.ebuild +++ b/media-gfx/brlcad/brlcad-7.24.0.ebuild @@ -105,7 +105,7 @@ src_install() { dodoc AUTHORS NEWS README HACKING TODO BUGS ChangeLog echo "PATH=\"${BRLCAD_DIR}/bin\"" > 99brlcad echo "MANPATH=\"${BRLCAD_DIR}/man\"" >> 99brlcad - doenvd 99brlcad || die + doenvd 99brlcad newicon misc/macosx/Resources/ReadMe.rtfd/brlcad_logo_tiny.png brlcad.png make_desktop_entry mged "BRL-CAD" brlcad "Graphics;Engineering" } diff --git a/media-gfx/brlcad/brlcad-7.24.2.ebuild b/media-gfx/brlcad/brlcad-7.24.2.ebuild index 09399be15..f828e7c8a 100644 --- a/media-gfx/brlcad/brlcad-7.24.2.ebuild +++ b/media-gfx/brlcad/brlcad-7.24.2.ebuild @@ -104,7 +104,7 @@ src_install() { dodoc AUTHORS NEWS README HACKING TODO BUGS ChangeLog echo "PATH=\"${BRLCAD_DIR}/bin\"" > 99brlcad echo "MANPATH=\"${BRLCAD_DIR}/man\"" >> 99brlcad - doenvd 99brlcad || die + doenvd 99brlcad newicon misc/macosx/Resources/ReadMe.rtfd/brlcad_logo_tiny.png brlcad.png make_desktop_entry mged "BRL-CAD" brlcad "Graphics;Engineering" } diff --git a/media-gfx/brlcad/brlcad-9999.ebuild b/media-gfx/brlcad/brlcad-9999.ebuild index 06de13dea..0ca181ca8 100644 --- a/media-gfx/brlcad/brlcad-9999.ebuild +++ b/media-gfx/brlcad/brlcad-9999.ebuild @@ -100,7 +100,7 @@ src_install() { dodoc AUTHORS NEWS README HACKING TODO BUGS ChangeLog echo "PATH=\"${BRLCAD_DIR}/bin\"" > 99brlcad echo "MANPATH=\"${BRLCAD_DIR}/man\"" >> 99brlcad - doenvd 99brlcad || die + doenvd 99brlcad newicon misc/macosx/Resources/ReadMe.rtfd/brlcad_logo_tiny.png brlcad.png make_desktop_entry mged "BRL-CAD" brlcad "Graphics;Engineering" } diff --git a/sci-biology/apollo/apollo-9999.ebuild b/sci-biology/apollo/apollo-9999.ebuild index c00cdcc83..b92396a8c 100644 --- a/sci-biology/apollo/apollo-9999.ebuild +++ b/sci-biology/apollo/apollo-9999.ebuild @@ -46,5 +46,5 @@ src_install() { java-pkg_dojar jars/apollo.jar echo "PATH=/opt/Apollo" > 99Apollo - doenvd 99Apollo || die + doenvd 99Apollo } diff --git a/sci-biology/consed/consed-29.ebuild b/sci-biology/consed/consed-29.ebuild index b814b4689..46144771b 100644 --- a/sci-biology/consed/consed-29.ebuild +++ b/sci-biology/consed/consed-29.ebuild @@ -74,7 +74,7 @@ src_install() { echo 'CONSED_PARAMETERS="${EPREFIX}/etc/consedrc"' >> "${S}"/99consed || die mkdir -p "${ED}"/etc/consedrc || die touch "${ED}"/etc/consedrc || die - doenvd "${S}/99consed" || die + doenvd "${S}/99consed" sed \ -e "s#/usr/local/genome#${EPREFIX}/usr#" \ -i "${ED}"/usr/bin/{*.perl,phredPhrap,phredPhrapWithPhdBalls} || die diff --git a/sci-biology/pileup/pileup-0.6.ebuild b/sci-biology/pileup/pileup-0.6.ebuild index aaa8a56b5..77322f471 100644 --- a/sci-biology/pileup/pileup-0.6.ebuild +++ b/sci-biology/pileup/pileup-0.6.ebuild @@ -48,14 +48,14 @@ src_compile(){ src_install(){ cd ssaha_pileup/ssaha_pileup || die "Cannot cd to "${S}"ssaha_pileup/ssaha_pileup" - dobin ssaha_pileup ssaha_solexa ssaha_pairs ssaha_clean ssaha_mates ssaha_cigar ssaha_indel view_pileup ssaha_reads ssaha_merge ssaha_check-cigar || die "dobin failed" + dobin ssaha_pileup ssaha_solexa ssaha_pairs ssaha_clean ssaha_mates ssaha_cigar ssaha_indel view_pileup ssaha_reads ssaha_merge ssaha_check-cigar "dobin failed" cd "${S}" || die for f in ssaha_pileup/other_codes/get_seqreads/get_seqreads \ ssaha_pileup/other_codes/ssaha_split/ssaha_split \ ssaha_pileup/other_codes/ssaha_parseSNP/ssaha_parseSNP \ ssaha_pileup/other_codes/search_read/search_read; do - dobin $f || die "dobin failed" + dobin $f "dobin failed" done # TODO: diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild index 86be5affe..18e3e697e 100644 --- a/sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild +++ b/sci-biology/repeatmasker/repeatmasker-4.0.6-r2.ebuild @@ -68,19 +68,20 @@ Y src_install() { exeinto /usr/share/${PN} for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do - doexe $i || die - dosym /usr/share/${PN}/$i /usr/bin/$i || die + doexe $i + dosym /usr/share/${PN}/$i /usr/bin/$i done dodir /usr/share/${PN}/lib insinto /usr/share/${PN}/lib doins "${S}"/*.pm "${S}"/Libraries/*.pm - rm -rf "${S}"/Libraries/*.pm # zap the supposedly misplaced RepeatAnnotationData.pm file + # zap the supposedly misplaced RepeatAnnotationData.pm file + rm -rf "${S}"/Libraries/*.pm || die # if sci-biology/repeatmasker-libraries is installed prevent file collision # and do NOT install Libraries/RepeatMaskerLib.embl file which contains # a limited version of the file: 20110419-min - rm -rf Libraries/RepeatMaskerLib.embl + rm -rf Libraries/RepeatMaskerLib.embl || die insinto /usr/share/${PN} doins -r util Matrices Libraries *.help keepdir /usr/share/${PN}/Libraries diff --git a/sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild b/sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild index ae4e970b5..6c0e63a2b 100644 --- a/sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild +++ b/sci-biology/tablet-bin/tablet-bin-1.14.10.21.ebuild @@ -93,5 +93,5 @@ src_install() { # python_foreach_impl python_doscript "${WORKDIR}"/coveragestats.py echo "PATH=${EPREFIX}/opt/Tablet" > 99Tablet - doenvd 99Tablet || die + doenvd 99Tablet } diff --git a/sci-biology/trf/trf-4.07b.ebuild b/sci-biology/trf/trf-4.07b.ebuild index 4d0416a31..eed81dea9 100644 --- a/sci-biology/trf/trf-4.07b.ebuild +++ b/sci-biology/trf/trf-4.07b.ebuild @@ -35,7 +35,7 @@ src_install() { dosym /opt/${PN}/${MY_P}.linux.exe /opt/bin/trf # GTK version (http://tandem.bu.edu/trf/downloads/trf400.linuxgtk.exe) has broken linking #if use gtk; then - # doexe trf400.linuxgtk.exe || die + # doexe trf400.linuxgtk.exe # make_desktop_entry /opt/${PN}/trf400.linuxgtk.exe "Tandem Repeats Finder" || die #fi dodoc \ diff --git a/sci-libs/med/med-2.3.6.ebuild b/sci-libs/med/med-2.3.6.ebuild index edfa5be63..d32da0be2 100644 --- a/sci-libs/med/med-2.3.6.ebuild +++ b/sci-libs/med/med-2.3.6.ebuild @@ -47,18 +47,18 @@ src_install() { exeinto /usr/share/doc/${PF}/examples/c for i in `ls tests/c/*.o` ; do - doexe tests/c/`basename ${i} .o` || die "doexe failed" + doexe tests/c/`basename ${i} .o` "doexe failed" done exeinto /usr/share/doc/${PF}/examples/c/.libs - doexe tests/c/.libs/* || die "doexe failed" + doexe tests/c/.libs/* "doexe failed" dodir /usr/share/doc/${PF}/examples/f/.libs exeinto /usr/share/doc/${PF}/examples/f for i in `ls tests/f/*.o` ; do - doexe tests/f/`basename ${i} .o` || die "doexe failed" + doexe tests/f/`basename ${i} .o` "doexe failed" done exeinto /usr/share/doc/${PF}/examples/f/.libs - doexe tests/f/.libs/* || die "doexe failed" + doexe tests/f/.libs/* "doexe failed" fi } |