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-rw-r--r--dev-python/PeakUtils/ChangeLog9
-rw-r--r--dev-python/PeakUtils/Manifest1
-rw-r--r--dev-python/PeakUtils/PeakUtils-1.0.1.ebuild24
-rw-r--r--dev-python/PeakUtils/metadata.xml15
-rw-r--r--dev-tex/pythontex/ChangeLog7
-rw-r--r--dev-tex/pythontex/pythontex-0.14-r1.ebuild2
-rw-r--r--dev-tex/pythontex/pythontex-9999.ebuild2
-rw-r--r--dev-util/amdapp/ChangeLog14
-rw-r--r--dev-util/amdapp/Manifest2
-rw-r--r--dev-util/amdapp/amdapp-2.9.1-r1.ebuild (renamed from dev-util/amdapp/amdapp-2.9.1.ebuild)14
-rw-r--r--dev-util/amdapp/amdapp-2.9.ebuild87
-rw-r--r--dev-util/amdapp/amdapp-3.0-r1.ebuild (renamed from dev-util/amdapp/amdapp-3.0.ebuild)14
-rw-r--r--sci-biology/mricron/ChangeLog3
-rw-r--r--sci-biology/mricron/mricron-9999.ebuild9
-rw-r--r--sci-libs/cblas-reference/ChangeLog6
-rw-r--r--sci-libs/cblas-reference/cblas-reference-20151113-r2.ebuild2
16 files changed, 94 insertions, 117 deletions
diff --git a/dev-python/PeakUtils/ChangeLog b/dev-python/PeakUtils/ChangeLog
new file mode 100644
index 000000000..e32d6390c
--- /dev/null
+++ b/dev-python/PeakUtils/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for dev-python/PeakUtils
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Id$
+
+*PeakUtils-1.0.1 (08 Dec 2015)
+
+ 08 Dec 2015; Marius Brehler <marbre@linux.sungazer.de>
+ +PeakUtils-1.0.1.ebuild, +metadata.xml:
+ dev-python/PeakUtils: New package, ebuild written by me
diff --git a/dev-python/PeakUtils/Manifest b/dev-python/PeakUtils/Manifest
new file mode 100644
index 000000000..0b59bfd79
--- /dev/null
+++ b/dev-python/PeakUtils/Manifest
@@ -0,0 +1 @@
+DIST PeakUtils-1.0.1.tar.gz 28966 SHA256 2ccd5eb26ff7f40b1ed1e2f0d11e36c3d67fa03ffff64ebd5473305e4a25d8ac SHA512 5af07b2fa926f3a083ac9c5f5fc6ecbc7d51c556d51080d020c272c59bbb99fe76ae65839626347785cc9da9fe33101c3e0261b84776d3cca0cf3aa0f784dfaf WHIRLPOOL 249969ed72a9f1672dccd88a5c873eed9167da0b66c5e923dd89d35fae0ead6b56ed16a305a102ff94bc4a42240f8c9b7ae6c7521819306ddd1a67a43a092b28
diff --git a/dev-python/PeakUtils/PeakUtils-1.0.1.ebuild b/dev-python/PeakUtils/PeakUtils-1.0.1.ebuild
new file mode 100644
index 000000000..06cb5aac4
--- /dev/null
+++ b/dev-python/PeakUtils/PeakUtils-1.0.1.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+PYTHON_COMPAT=( python3_{4,5} )
+
+inherit distutils-r1
+
+MY_PN="pyFFTW"
+
+DESCRIPTION="Peak detection utilities for 1D data"
+HOMEPAGE="https://bitbucket.org/lucashnegri/peakutils"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+
+RDEPEND="
+ >=dev-python/numpy-1.8.0[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ "
+DEPEND="${RDEPEND}"
diff --git a/dev-python/PeakUtils/metadata.xml b/dev-python/PeakUtils/metadata.xml
new file mode 100644
index 000000000..a07f5e408
--- /dev/null
+++ b/dev-python/PeakUtils/metadata.xml
@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci</herd>
+ <longdescription>
+ As the name implies, this package provides utilities related to the
+ detection of peaks on 1D data. Includes functions to perform
+ baseline estimation, to find the indexes of the peaks in the data
+ and performing Gaussian fitting or centroid computation to further
+ increase the resolution of the peak detection.
+ </longdescription>
+ <upstream>
+ <remote-id type="pypi">PeakUtils</remote-id>
+ </upstream>
+</pkgmetadata>
diff --git a/dev-tex/pythontex/ChangeLog b/dev-tex/pythontex/ChangeLog
index b283f7037..871e26043 100644
--- a/dev-tex/pythontex/ChangeLog
+++ b/dev-tex/pythontex/ChangeLog
@@ -2,6 +2,13 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 07 Dec 2015; Horea Christian <h.chr@mail.ru> -ChangeLog,
+ pythontex-0.14-r1.ebuild, pythontex-9999.ebuild:
+ dev-tex/pythontex: fixed access violation
+
+ 18 Oct 2015; <chymera@gentoo.org> pythontex-9999.ebuild:
+ dev-tex/pythontex: trying to fix access violation
+
22 Jun 2015; Horea Christian <h.chr@mail.ru> pythontex-0.14-r1.ebuild,
pythontex-9999.ebuild:
pruned deps
diff --git a/dev-tex/pythontex/pythontex-0.14-r1.ebuild b/dev-tex/pythontex/pythontex-0.14-r1.ebuild
index d6c8bef4d..33ba193ae 100644
--- a/dev-tex/pythontex/pythontex-0.14-r1.ebuild
+++ b/dev-tex/pythontex/pythontex-0.14-r1.ebuild
@@ -31,7 +31,7 @@ src_compile() {
cd ${PN} || die
ebegin "Compiling ${PN}"
rm ${PN}.sty || die
- latex ${PN}.ins extra || die
+ VARTEXFONTS="${T}/fonts" latex ${PN}.ins extra || die
eend
}
diff --git a/dev-tex/pythontex/pythontex-9999.ebuild b/dev-tex/pythontex/pythontex-9999.ebuild
index 5cfce902e..69c265482 100644
--- a/dev-tex/pythontex/pythontex-9999.ebuild
+++ b/dev-tex/pythontex/pythontex-9999.ebuild
@@ -32,7 +32,7 @@ src_compile() {
cd ${PN} || die
ebegin "Compiling ${PN}"
rm ${PN}.sty || die
- latex ${PN}.ins extra || die
+ VARTEXFONTS="${T}/fonts" latex ${PN}.ins extra || die
eend
}
diff --git a/dev-util/amdapp/ChangeLog b/dev-util/amdapp/ChangeLog
index 084e90ce7..582c3402d 100644
--- a/dev-util/amdapp/ChangeLog
+++ b/dev-util/amdapp/ChangeLog
@@ -2,6 +2,20 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+*amdapp-2.9.1-r1 (07 Dec 2015)
+*amdapp-3.0-r1 (07 Dec 2015)
+
+ 07 Dec 2015; Marius Brehler <marbre@linux.sungazer.de>
+ +amdapp-2.9.1-r1.ebuild, +amdapp-3.0-r1.ebuild, -amdapp-2.9.1.ebuild,
+ -amdapp-3.0.ebuild:
+ dev-util/amdapp: Add dependency on x11-drivers/ati-drivers Rely on
+ libOpenCL.so* and /etc/OpenCL/vendors files provided by catalyst. Gentoo-Bug:
+ https://bugs.gentoo.org/show_bug.cgi?id=544124 Gentoo-Bug:
+ https://bugs.gentoo.org/show_bug.cgi?id=567240
+
+ 07 Dec 2015; Marius Brehler <marbre@linux.sungazer.de> -amdapp-2.9.ebuild:
+ dev-util/amdapp: Drop old
+
*amdapp-3.0 (27 Nov 2015)
27 Nov 2015; Marius Brehler <marbre@linux.sungazer.de> +amdapp-3.0.ebuild,
diff --git a/dev-util/amdapp/Manifest b/dev-util/amdapp/Manifest
index 713417be7..a7a444f5d 100644
--- a/dev-util/amdapp/Manifest
+++ b/dev-util/amdapp/Manifest
@@ -1,6 +1,4 @@
DIST AMD-APP-SDK-linux-v2.9-1.599.381-GA-x64.tar.bz2 126276109 SHA256 05337de10a4731a4f6b602849e8f0d2d0eec7bdd3637e94a8ea04aa332d26036 SHA512 41267cc5f020c6ddb6e60e6ed7141584aba4728c7f471d1b1244747fadfa175c811f7a0a273d95ddc07ac1b4fde8b64ad514a5eeee771e375b2d68f86eefcb50 WHIRLPOOL 172f3c9081569cbf5781a460b3a4ffcd9a2851cc0f47554fc9a1da5dcfd970fb774de46e8846c08331a166cac56687f13a661c2b74912e092b36d3b1d8829bc5
DIST AMD-APP-SDK-linux-v2.9-1.599.381-GA-x86.tar.bz2 100512787 SHA256 a66bd935dfe871ecb0e940a4b5bc3bde310fca59a61bf9669f6b580d845c2db5 SHA512 59b3a12b51b22437fe0e743e7e0429455853f11c2a1b65fc91a63d6250dce1230460702287b1dc16a4672114d097a9e002ec93ed8c5063be2b070c242299aa5e WHIRLPOOL 56442f1a6bf03757b3a637f69c4083391540d523a74091318686da9ac8e342ff876285ce05ed3b6d21ce6e50072cdd6f0c239bee3550adafaff0cf2ae2065c6f
-DIST AMD-APP-SDK-v2.9-lnx32.tgz 100284370 SHA256 86c0ebfd6a9037385d83d43237d986614f05ba035f50fd8d45e27c0d3c465646 SHA512 c0490223e5d8880bedf076fc6d7518507d59827caa29507cb0962b3ca4670f2a3a1d083019600ce838385d3116574887739f505cfdc01f5077a00ae584854bd0 WHIRLPOOL e6655eeeb47588d999585249f335571e427528d1a25878d6f16e47d37e1b30db5e1a1e13603f934ee20d76e5a3d16445c348169c3b6b6cbb81e5dfd543a43674
-DIST AMD-APP-SDK-v2.9-lnx64.tgz 149825628 SHA256 6287d3d0700e563f2086188b1b2143a0e988a12c1dc22709b9a23d28b8ae83bb SHA512 b00d92b9e2ead559aa66120697a1dc15ecbc1c880eed99c2a7ed030f6cccce7434245a94aa6149e2ce2dc287cb9443700d7dbc8b3756c7420c0f54cc008065bb WHIRLPOOL b839c042a73251c0b774d1c2f6b968c166f4b74b4828a4f12709220e2c79783833979140127ec98a19b0883d7bf49d031088aeaeeb150855907f18378d5de0a9
DIST AMD-APP-SDKInstaller-v3.0.130.135-GA-linux32.tar.bz2 175232929 SHA256 8e1ad82b4cd2fcf58649daf4e43574d9d5c654cd2e07fcbb4bae7cc6d2f3daf6 SHA512 8f62ec26bf6655e71948418113553f39bfcff8588a857cb8706c2538c4742ab0e95d3843e1084acd7a8d0e8b26593a140677316b8aa285aca454828e545402a6 WHIRLPOOL 54001052fa9e8903a21916ec6265c5882d7e0d69180d2041ddde6d9ce9412a4188f7bf39d67f51792505b9a4e75b9dada2c78fcdc5e3ecadf522a8b5bda68091
DIST AMD-APP-SDKInstaller-v3.0.130.135-GA-linux64.tar.bz2 175434609 SHA256 27a6145a73910d2320fd017159cf72f16601c375c2b304644c31566f45cc26a6 SHA512 c73ea4b4fa3f383e63755233d78203f1f5d387de1202875b40ed8e9a8b1e5a3bd6e9731244aac1086cdc1a764974ff95daca34261295a2746ddd478d0774460b WHIRLPOOL a11c878347e713b57343a7734acac505055154678cfb453cd1da84279f3e4100685d89151fb3be8ff16155f6459fa05fa9b12b5a634e28b86945023505fac810
diff --git a/dev-util/amdapp/amdapp-2.9.1.ebuild b/dev-util/amdapp/amdapp-2.9.1-r1.ebuild
index 657a36245..b1ac7856a 100644
--- a/dev-util/amdapp/amdapp-2.9.1.ebuild
+++ b/dev-util/amdapp/amdapp-2.9.1-r1.ebuild
@@ -33,7 +33,8 @@ RDEPEND="
media-libs/freeglut
virtual/opencl
examples? ( media-libs/glew )
- app-eselect/eselect-opencl"
+ app-eselect/eselect-opencl
+ x11-drivers/ati-drivers"
DEPEND="
${RDEPEND}
dev-lang/perl
@@ -61,10 +62,6 @@ src_unpack() {
fi
}
-src_prepare() {
- AMD_CL=usr/$(get_libdir)/OpenCL/vendors/amd/
-}
-
src_compile() {
MAKEOPTS+=" -j1"
use examples && cd samples/opencl && default
@@ -73,11 +70,4 @@ src_compile() {
src_install() {
dodir /opt/AMDAPP
cp -R "${S}/"* "${ED}/opt/AMDAPP" || die "Install failed!"
-
- dodir "${AMD_CL}"
- dosym "/opt/AMDAPP/lib/`arch`/libOpenCL.so" "${AMD_CL}"
- dosym "/opt/AMDAPP/lib/`arch`/libOpenCL.so.1" "${AMD_CL}"
-
- #insinto /etc/OpenCL/vendors/
- #doins ../etc/OpenCL/vendors/*
}
diff --git a/dev-util/amdapp/amdapp-2.9.ebuild b/dev-util/amdapp/amdapp-2.9.ebuild
deleted file mode 100644
index 9ad0debde..000000000
--- a/dev-util/amdapp/amdapp-2.9.ebuild
+++ /dev/null
@@ -1,87 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit multilib
-
-X86_AT="AMD-APP-SDK-v${PV}-lnx32.tgz"
-AMD64_AT="AMD-APP-SDK-v${PV}-lnx64.tgz"
-
-MY_P_AMD64="AMD-APP-SDK-v${PV}-RC-lnx64"
-MY_P_AMD32="AMD-APP-SDK-v${PV}-RC-lnx32"
-MY_P="AMD-APP-SDK-v${PV}-RC"
-
-DESCRIPTION="AMD Accelerated Parallel Processing (APP) SDK"
-HOMEPAGE="http://developer.amd.com/tools-and-sdks/opencl-zone/amd-accelerated-parallel-processing-app-sdk"
-SRC_URI="
- amd64? ( ${AMD64_AT} )
- x86? ( ${X86_AT} )"
-
-LICENSE="AMD"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="examples"
-
-RDEPEND="
- app-eselect/eselect-opengl
- !<dev-util/amdstream-2.6
- sys-devel/llvm
- sys-devel/gcc:*
- media-libs/mesa
- media-libs/freeglut
- virtual/opencl
- examples? ( media-libs/glew )
- app-eselect/eselect-opencl"
-DEPEND="
- ${RDEPEND}
- dev-lang/perl
- dev-util/patchelf
- sys-apps/fakeroot"
-
-RESTRICT="mirror strip fetch"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_nofetch() {
- einfo "AMD doesn't provide direct download links. Please download"
- einfo "${ARCHIVE} from ${HOMEPAGE}"
-}
-
-src_unpack() {
- default
-
- cd "${WORKDIR}" || die
-
- if use amd64 || use amd64-linux ; then
- unpack ./${MY_P_AMD64}.tgz
- mv -f "${MY_P_AMD64}" "${MY_P}" || die
- else
- unpack ./${MY_P_X86}.tgz
- mv -f "${MY_P_X86}" "${MY_P}" || die
- fi
-
- unpack ./icd-registration.tgz
-}
-
-src_prepare() {
- AMD_CL=usr/$(get_libdir)/OpenCL/vendors/amd/
-}
-
-src_compile() {
- MAKEOPTS+=" -j1"
- use examples && cd samples/opencl && default
-}
-
-src_install() {
- dodir /opt/AMDAPP
- cp -R "${S}/"* "${ED}/opt/AMDAPP" || die "Install failed!"
-
- dodir "${AMD_CL}"
- dosym "/opt/AMDAPP/lib/`arch`/libOpenCL.so" "${AMD_CL}"
- dosym "/opt/AMDAPP/lib/`arch`/libOpenCL.so.1" "${AMD_CL}"
-
- insinto /etc/OpenCL/vendors/
- doins ../etc/OpenCL/vendors/*
-}
diff --git a/dev-util/amdapp/amdapp-3.0.ebuild b/dev-util/amdapp/amdapp-3.0-r1.ebuild
index 7baa570b2..a9bea09b4 100644
--- a/dev-util/amdapp/amdapp-3.0.ebuild
+++ b/dev-util/amdapp/amdapp-3.0-r1.ebuild
@@ -33,7 +33,8 @@ RDEPEND="
media-libs/freeglut
virtual/opencl
examples? ( media-libs/glew )
- app-eselect/eselect-opencl"
+ app-eselect/eselect-opencl
+ x11-drivers/ati-drivers"
DEPEND="
${RDEPEND}
dev-lang/perl
@@ -61,10 +62,6 @@ src_unpack() {
fi
}
-src_prepare() {
- AMD_CL=usr/$(get_libdir)/OpenCL/vendors/amd/
-}
-
src_compile() {
MAKEOPTS+=" -j1"
use examples && cd samples/opencl && default
@@ -73,11 +70,4 @@ src_compile() {
src_install() {
dodir /opt/AMDAPP
cp -R "${S}/"* "${ED}/opt/AMDAPP" || die "Install failed!"
-
- dodir "${AMD_CL}"
- dosym "/opt/AMDAPP/lib/`arch`/libOpenCL.so" "${AMD_CL}"
- dosym "/opt/AMDAPP/lib/`arch`/libOpenCL.so.1" "${AMD_CL}"
-
- #insinto /etc/OpenCL/vendors/
- #doins ../etc/OpenCL/vendors/*
}
diff --git a/sci-biology/mricron/ChangeLog b/sci-biology/mricron/ChangeLog
index a51ef01da..9e597292f 100644
--- a/sci-biology/mricron/ChangeLog
+++ b/sci-biology/mricron/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 06 Dec 2015; Horea Christian <h.chr@mail.ru> mricron-9999.ebuild:
+ sci-biology/mricron: added icon and gnome desktop entry
+
04 Dec 2015; Horea Christian <h.chr@mail.ru> mricron-9999.ebuild:
sci-biology/mricron: corrected binary paths
diff --git a/sci-biology/mricron/mricron-9999.ebuild b/sci-biology/mricron/mricron-9999.ebuild
index 94cab6292..b8099b6c0 100644
--- a/sci-biology/mricron/mricron-9999.ebuild
+++ b/sci-biology/mricron/mricron-9999.ebuild
@@ -26,5 +26,14 @@ src_install() {
dobin mricron
dobin dcm2nii/dcm2nii
dobin dcm2nii/dcm2niigui
+ doicon icons/mricron.png
+ make_desktop_entry mricron MRIcron mricron
+}
+
+pkg_postinst() {
+ gnome2_icon_cache_update
+}
+pkg_postrm() {
+ gnome2_icon_cache_update
}
diff --git a/sci-libs/cblas-reference/ChangeLog b/sci-libs/cblas-reference/ChangeLog
index 6ba94df12..d95415748 100644
--- a/sci-libs/cblas-reference/ChangeLog
+++ b/sci-libs/cblas-reference/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-libs/cblas-reference
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Id$
+ 07 Dec 2015; Ted Tanberry <ted.tanberry@gmail.com>
+ cblas-reference-20151113-r2.ebuild:
+ sci-libs/cblas-reference: Added missing virtual/blas dependency.
+
*cblas-reference-20110218-r1 (13 Oct 2014)
13 Oct 2014; Mark Wright <gienah@gentoo.org>
diff --git a/sci-libs/cblas-reference/cblas-reference-20151113-r2.ebuild b/sci-libs/cblas-reference/cblas-reference-20151113-r2.ebuild
index 3a03361cd..4f623158c 100644
--- a/sci-libs/cblas-reference/cblas-reference-20151113-r2.ebuild
+++ b/sci-libs/cblas-reference/cblas-reference-20151113-r2.ebuild
@@ -24,7 +24,7 @@ IUSE="static-libs test"
REQUIRED_USE="test? ( ${PYTHON_REQUIRED_USE} )"
-RDEPEND=""
+RDEPEND="virtual/blas"
DEPEND="${RDEPEND}
test? ( ${PYTHON_DEPS} )
virtual/pkgconfig"