diff options
| -rw-r--r-- | sci-chemistry/almost/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-chemistry/almost/Manifest | 5 | ||||
| -rw-r--r-- | sci-chemistry/almost/almost-1.0.3.ebuild | 55 | ||||
| -rw-r--r-- | sci-chemistry/almost/files/gcc-4.3.patch | 60 | ||||
| -rw-r--r-- | sci-chemistry/almost/metadata.xml | 10 |
5 files changed, 138 insertions, 0 deletions
diff --git a/sci-chemistry/almost/ChangeLog b/sci-chemistry/almost/ChangeLog new file mode 100644 index 000000000..bc499938e --- /dev/null +++ b/sci-chemistry/almost/ChangeLog @@ -0,0 +1,8 @@ +# ChangeLog for sci-chemistry/almost +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 07 Nov 2008; justin Lecher <jlec@j-schmitz.net> +metadata.xml, + +almost-1.0.3.ebuild: + Setup sci-chemistry/almost + diff --git a/sci-chemistry/almost/Manifest b/sci-chemistry/almost/Manifest new file mode 100644 index 000000000..08775c1b6 --- /dev/null +++ b/sci-chemistry/almost/Manifest @@ -0,0 +1,5 @@ +AUX gcc-4.3.patch 1766 RMD160 56732dd9e2bb4fab2808c9f919e0393b10449216 SHA1 49347a5cc03f97feec2b1f3575ba0247e1c061c0 SHA256 f9aa5c578cb0ba24724ad11c12f81c96303ca3bb6700d6cdcf22656d6d1b3032 +DIST almost-1.0.3.tar.gz 14056910 RMD160 409a53f661876eb1fba702ee6cc62a2928a5c014 SHA1 bd9c21d1f0e802f66e30c9ad9794a2f9ce98c5da SHA256 94893ce43f50e426c9ecfba67c5a555307ba9eb19b2a2034a69e5828778e9632 +EBUILD almost-1.0.3.ebuild 1289 RMD160 f9e4918b1405bc273c765268d6aabc4dacf865d2 SHA1 6b518414d47fcd370b9dc0042789ef028cc26258 SHA256 93aae4f321e2b15dd5e49729ce51e24ab85eec9eefcee950f22775358c2d5e83 +MISC ChangeLog 240 RMD160 b6d2dff2819bd8f01b9774323cd37490ad21c87d SHA1 21ec06f925f415df16d6ab53eeae155d723495c8 SHA256 d9c4c538b6fa627d6f50efb4c6f3a89d55f372125d75b48cb08965bdeb8c5788 +MISC metadata.xml 268 RMD160 adbf63d25b16c6d9199c20ab0092b9a75a851605 SHA1 ffc9c0fba9a923d9ba5326283b60c31573888cf3 SHA256 6a8f1e47a14b8730b4a7ba9e0f0055ab4d6071ebcaf12bb601e8b949223c0c7f diff --git a/sci-chemistry/almost/almost-1.0.3.ebuild b/sci-chemistry/almost/almost-1.0.3.ebuild new file mode 100644 index 000000000..ff764d7f5 --- /dev/null +++ b/sci-chemistry/almost/almost-1.0.3.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +inherit eutils flag-o-matic autotools + +DESCRIPTION="all atom molecular simulation toolkit" +HOMEPAGE="http://www-almost.ch.cam.ac.uk/site" +#SRC_URI="http://www-almost.ch.cam.ac.uk/site/downloads/${P}.tar.gz" +## Upstream changes tarballs w/o revision bump so I host a copy +SRC_URI="http://gentoo.j-schmitz.net/portage/distfiles/ALL/${P}.tar.gz" +LICENSE="GPL-2" + +SLOT="0" +KEYWORDS="~amd64 ~x86" + +IUSE="" +RDEPEND="" + +## dev-libs/boost-1.3.6, once it is in the tree soft masked +## until then we use the shipped one +# Upstream has to fix its code so that it compiles with mpicxx +## Upstream only uses sys-cluster/mpich2, so we should first get this to work. +#DEPEND="mpi? ( sys-cluster/mpich2 )" +DEPEND="${RDEPEND}" + +RESTRICT="mirror" + +src_unpack(){ + unpack ${A} + + cd "${S}" + + epatch "${FILESDIR}"/gcc-4.3.patch + eautoreconf || die "Reconfiguration failed" +} + +src_compile(){ + + econf || die "configure failed" + + emake CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || \ + die "make failed" + +} + +src_test() { + emake check || die "test failed" +} + +src_install() { + emake DESTDIR="${D}" install || die "Install failed" + + dodoc README NEWS TODO ChangeLog AUTHORS +} diff --git a/sci-chemistry/almost/files/gcc-4.3.patch b/sci-chemistry/almost/files/gcc-4.3.patch new file mode 100644 index 000000000..44d06c73f --- /dev/null +++ b/sci-chemistry/almost/files/gcc-4.3.patch @@ -0,0 +1,60 @@ +#--- src/lib/modules/shx/shxmalloc.cpp.orig 2008-11-07 11:41:35.000000000 +0100 +#+++ src/lib/modules/shx/shxmalloc.cpp 2008-11-07 11:41:43.000000000 +0100 +#@@ -15,6 +15,7 @@ +# ***************************************************************************/ + +# #include <vector> +#+#include <cstdlib> +# +# using namespace std; +# +#--- ./include/almost/forcefield/spec.h.orig 2008-11-07 11:57:47.000000000 +0100 +#+++ ./include/almost/forcefield/spec.h 2008-11-07 11:58:35.000000000 +0100 +#@@ -20,6 +20,7 @@ +# #define __SPEC__ +# +# #include <almost.h> +#+#include <typeinfo> +# namespace Almost { +# +# struct None{}; +--- include/almost/cheshire/pssi.h.orig 2008-11-07 12:47:11.000000000 +0100 ++++ include/almost/cheshire/pssi.h 2008-11-07 12:47:24.000000000 +0100 +@@ -22,6 +22,7 @@ + #include <almost.h> + #include <sstream> + #include <iterator> ++#include <cstring> + namespace Almost { + + class PSSI { +--- src/lib/algorithm/topos.cpp.orig 2008-11-07 13:18:10.000000000 +0100 ++++ src/lib/algorithm/topos.cpp 2008-11-07 13:18:27.000000000 +0100 +@@ -27,6 +27,7 @@ + #include <cmath> + #include <cheshire/topos.h> + #include <cheshire/topos_rc.h> ++#include <cstring> + namespace Almost { + + namespace Topos { +--- include/almost/rose/rosedb.h.orig 2008-11-07 12:26:56.000000000 +0100 ++++ include/almost/rose/rosedb.h 2008-11-07 12:27:04.000000000 +0100 +@@ -21,6 +21,7 @@ + + #include <almost.h> + #include <iterator> ++#include <cstring> + + namespace Utils { + inline int toinda(char c){ +--- src/lib/zeta/zobj.cpp 2008-07-22 01:31:34.000000000 +0200 ++++ src/lib/zeta/zobj.cpp.new 2008-11-23 19:19:26.000000000 +0100 +@@ -2,6 +2,7 @@ + #include <zeta/zobj.h> + #include <zeta/zobj.hpp> + #include <zeta/zextinstance.h> ++#include <cstring> + + + ZObj * FactoryTrampolin::bind(ZObj * o){ diff --git a/sci-chemistry/almost/metadata.xml b/sci-chemistry/almost/metadata.xml new file mode 100644 index 000000000..62373450c --- /dev/null +++ b/sci-chemistry/almost/metadata.xml @@ -0,0 +1,10 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>maintainer-wanted</herd> + <maintainer> + <email>justin@j-schmitz.net</email> + <name>Justin Lecher</name> + </maintainer> +</pkgmetadata> + |