diff options
| -rw-r--r-- | sci-biology/samtools/samtools-0.1.7.ebuild (renamed from sci-biology/samtools/samtools-0.1.2.ebuild) | 18 |
1 files changed, 12 insertions, 6 deletions
diff --git a/sci-biology/samtools/samtools-0.1.2.ebuild b/sci-biology/samtools/samtools-0.1.7.ebuild index 77f972b61..b040fdea4 100644 --- a/sci-biology/samtools/samtools-0.1.2.ebuild +++ b/sci-biology/samtools/samtools-0.1.7.ebuild @@ -2,9 +2,14 @@ # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1.ebuild,v 1.3 2009/02/26 17:36:19 weaver Exp $ +EAPI="2" + +MY_P="${P}a" + DESCRIPTION="SAM (Sequence Alignment/Map), a format for storing large nucleotide sequence alignments" HOMEPAGE="http://${PN}.sourceforge.net/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" +#SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" +SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.bz2" LICENSE="MIT" SLOT="0" @@ -14,16 +19,17 @@ KEYWORDS="~amd64 ~x86" DEPEND="" RDEPEND="" -src_unpack() { - unpack ${A} +S="${WORKDIR}/${MY_P}" + +src_prepare() { sed -i 's/^CFLAGS=/CFLAGS+=/' "${S}"/{Makefile,misc/Makefile} } src_install() { - dobin razip bgzip samtools || die - dobin misc/{faidx,md5sum-lite,md5fa,maq2sam-short,maq2sam-long,wgsim,*.pl} || die + dobin samtools || die + dobin $(find misc -type f -executable) || die insinto /usr/share/${PN} doins -r examples || die doman ${PN}.1 || die - dodoc ChangeLog NEWS + dodoc AUTHORS ChangeLog NEWS } |