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-rw-r--r--app-portage/g-cran/ChangeLog20
-rw-r--r--app-portage/g-cran/g-cran-9999.ebuild25
-rw-r--r--app-portage/g-cran/metadata.xml10
-rw-r--r--dev-cpp/eigen/ChangeLog6
-rw-r--r--dev-cpp/eigen/Manifest2
-rw-r--r--dev-cpp/eigen/eigen-3.0.6-r1.ebuild84
l---------dev-cpp/eigen/eigen-3.1.2.ebuild1
-rw-r--r--dev-cpp/eigen/metadata.xml14
-rw-r--r--dev-java/flexdock/Manifest2
-rw-r--r--sci-astronomy/scamp/Manifest2
-rw-r--r--sci-astronomy/sextractor/Manifest2
-rw-r--r--sci-astronomy/skymaker/Manifest2
-rw-r--r--sci-astronomy/stuff/Manifest2
13 files changed, 20 insertions, 152 deletions
diff --git a/app-portage/g-cran/ChangeLog b/app-portage/g-cran/ChangeLog
deleted file mode 100644
index f3e33ea1d..000000000
--- a/app-portage/g-cran/ChangeLog
+++ /dev/null
@@ -1,20 +0,0 @@
-# ChangeLog for app-portage/g-cran
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 25 Jun 2011; Justin Lecher <jlec@gentoo.org> g-cran-9999.ebuild,
- metadata.xml:
- migrate from 'git' to 'git-2'
-
- 15 Jul 2010; <auke@gentoo.org> g-cran-9999.ebuild:
- Keyword g-cran-9999 to ~x86 and ~amd64
-
- 30 Jun 2010; Auke Booij(tulcod) <auke@tulcod.com> g-cran:
- Moving package from sys-apps to app-portage
-
- 29 Jun 2010; Justin Lecher <jlec@gentoo.org> g-cran-9999.ebuild:
- Python ABI fixes
-
-*g-cran-9999 (26 06 2010)
- 26 06 2010; Auke Booij (tulcod) <auke@tulcod.com> ChangeLog:
- Initial import
diff --git a/app-portage/g-cran/g-cran-9999.ebuild b/app-portage/g-cran/g-cran-9999.ebuild
deleted file mode 100644
index 6635f0f57..000000000
--- a/app-portage/g-cran/g-cran-9999.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-SUPPORT_PYTHON_ABIS="1"
-RESTRICT_PYTHON_ABIS="3.*"
-
-inherit distutils git-2
-
-DESCRIPTION="CRAN-style packages installer helper for package managers"
-HOMEPAGE="http://git.overlays.gentoo.org/gitweb/?p=proj/g-cran.git;a=summary"
-SRC_URI=""
-EGIT_BRANCH="master"
-EGIT_REPO_URI="git://git.overlays.gentoo.org/proj/g-cran.git"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE=""
-
-DEPEND="dev-lang/R"
-RDEPEND="${DEPEND}"
diff --git a/app-portage/g-cran/metadata.xml b/app-portage/g-cran/metadata.xml
deleted file mode 100644
index 4dd000045..000000000
--- a/app-portage/g-cran/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci</herd>
- <longdescription lang="en">
-G-CRAN helps package managers install R packages. It reads CRAN-style
-repositories and translates it into something most package managers
-can work with.
-</longdescription>
-</pkgmetadata>
diff --git a/dev-cpp/eigen/ChangeLog b/dev-cpp/eigen/ChangeLog
index 471649a8f..d530d036b 100644
--- a/dev-cpp/eigen/ChangeLog
+++ b/dev-cpp/eigen/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/dev-cpp/eigen/ChangeLog,v 1.44 2011/03/25 16:01:28 jlec Exp $
+*eigen-3.1.2 (19 Nov 2012)
+
+ 19 Nov 2012; S├ębastien Fabbro <bicatali@gentoo.org> +eigen-3.1.2.ebuild,
+ -eigen-3.0.6-r1.ebuild, metadata.xml:
+ dev-cpp/eigen: Version bump
+
25 Oct 2012; Justin Lecher <jlec@gentoo.org> eigen-3.0.6-r1.ebuild,
eigen-9999.ebuild, metadata.xml:
Use vcs-snapshot.eclass, correct usage of fortran-2.eclass, some layout
diff --git a/dev-cpp/eigen/Manifest b/dev-cpp/eigen/Manifest
index fbd4652fb..0d71fe3fd 100644
--- a/dev-cpp/eigen/Manifest
+++ b/dev-cpp/eigen/Manifest
@@ -1,2 +1,2 @@
-DIST eigen-3.0.6.tar.bz2 961722 SHA256 32e1275a105339003ba34007dd07dc1c62077d75882f3eeddd40a7ec5a5bfd87 SHA512 97cf5126984848f31b3c45c44d7ee6b8d42eca459ff2cc5535413efc768254a1ab738d935c70f9a457a9eaee5faa3c1b08c1f17193b6fcecb5ae0f0b6b32d1fa WHIRLPOOL e17409a807228b63b866c282f767c9107e6c0b45ad84bb311a5ef70053dca3d48580c8839bb6b8fcf5c5bab1a0c102413a96c06007bfbd2218bf260c4a522586
DIST eigen-3.1.1.tar.bz2 1049447 SHA256 531a97c3d96d151c72951e6f295b5e5f3f68f668fd04c9b1a0d84187547121ab SHA512 099310095c2b0a0e5e6af389414ab35c73828699d489813d527345307bc4cdc7f40eca24cb798fb2b29f3048938ae82219b0e3a410e64f32724bd0d27a134d50 WHIRLPOOL a02818d046dc80cbcd7cdf601ab97917d22e8ec80c88107098b47833571da6282c5ea12bb0575eac9d20ef5c73630edd68485de546bfd9632d93eb733f8f62e3
+DIST eigen-3.1.2.tar.bz2 1052120 SHA256 5efddc5b11f651bc531b46e4a00b805b16f8bb356db361a533c92145ecdadcc3 SHA512 7f7cbada67fc4c63fd60ebfefaa2492432546e91e014a32103f958cd1f9644dff424a2e1046d8de51982dc9072873a96dfbe75e95a1529fd47880069989ae837 WHIRLPOOL f1809ae4157f7ef86737fa5283bff17fc8e902fbf31bbc8be02c67143e9ab7cb43e72a3a51e444d753b4bc2054ca6d1bdc16aa68998f9fc6962978ca1c29f0d8
diff --git a/dev-cpp/eigen/eigen-3.0.6-r1.ebuild b/dev-cpp/eigen/eigen-3.0.6-r1.ebuild
deleted file mode 100644
index 1ad9b1556..000000000
--- a/dev-cpp/eigen/eigen-3.0.6-r1.ebuild
+++ /dev/null
@@ -1,84 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=4
-
-FORTRAN_NEEDED=fortran
-
-inherit alternatives-2 cmake-utils fortran-2 multilib vcs-snapshot
-
-DESCRIPTION="C++ template library for linear algebra"
-HOMEPAGE="http://eigen.tuxfamily.org/"
-SRC_URI="http://bitbucket.org/eigen/eigen/get/${PV}.tar.bz2 -> ${P}.tar.bz2"
-
-SLOT="3"
-LICENSE="|| ( LGPL-3 GPL-2 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="adolc fortran fftw doc gmp sparse static-libs test"
-
-CDEPEND="
- adolc? ( sci-libs/adolc[sparse?] )
- fftw? ( >=sci-libs/fftw-3 )
- gmp? ( dev-libs/gmp dev-libs/mpfr )
- sparse? (
- dev-cpp/sparsehash
- sci-libs/cholmod[metis]
- sci-libs/superlu
- sci-libs/umfpack
- )"
-
-DEPEND="
- doc? ( app-doc/doxygen[dot,latex] )
- test? ( ${CDEPEND} )"
-RDEPEND="
- !dev-cpp/eigen:0
- ${CDEPEND}"
-
-src_configure() {
- # TOFIX: static-libs for blas are always built with PIC
- # TOFIX: is it worth fixing all the automagic given no library is built?
- mycmakeargs=(
- -DEIGEN_BUILD_BTL=OFF
- $(cmake-utils_use test EIGEN_BUILD_TESTS)
- $(cmake-utils_use !fortran EIGEN_TEST_NO_FORTRAN)
- )
- CMAKE_BUILD_TYPE="release" cmake-utils_src_configure
- # lapack not ready yet?
- use fortran && FORTRAN_LIBS="blas"
-}
-
-src_compile() {
- local targets="${FORTRAN_LIBS}"
- use doc && targets+=" doc"
- use test && targets+=" buildtests"
- cmake-utils_src_compile ${targets}
-}
-
-src_install() {
- cmake-utils_src_install
- use doc && dohtml -r "${CMAKE_BUILD_DIR}"/doc/html/*
- local x
- for x in ${FORTRAN_LIBS}; do
- local libname="eigen_${x}"
- cd "${CMAKE_BUILD_DIR}"/${x}
- dolib.so lib${libname}.so
- use static-libs && newlib.a lib${libname}_static.a lib${libname}.a
- cat > ${libname}.pc <<-EOF
- prefix=${EPREFIX}/usr
- libdir=\${prefix}/$(get_libdir)
- includedir=\${prefix}/include
- Name: ${PN}
- Description: ${DESCRIPTION} ${x^^} implementation
- Version: ${PV}
- URL: ${HOMEPAGE}
- Libs: -L\${libdir} -l${libname}
- Libs.private: -lm
- $([[ ${x} == lapack ]] && echo "Requires: blas")
- EOF
- alternatives_for ${x} eigen 0 \
- /usr/$(get_libdir)/pkgconfig/${x}.pc ${libname}.pc
- insinto /usr/$(get_libdir)/pkgconfig
- doins ${libname}.pc
- done
-}
diff --git a/dev-cpp/eigen/eigen-3.1.2.ebuild b/dev-cpp/eigen/eigen-3.1.2.ebuild
new file mode 120000
index 000000000..eafd77401
--- /dev/null
+++ b/dev-cpp/eigen/eigen-3.1.2.ebuild
@@ -0,0 +1 @@
+eigen-9999.ebuild \ No newline at end of file
diff --git a/dev-cpp/eigen/metadata.xml b/dev-cpp/eigen/metadata.xml
index bb9ba2f9e..a4a932705 100644
--- a/dev-cpp/eigen/metadata.xml
+++ b/dev-cpp/eigen/metadata.xml
@@ -1,23 +1,23 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci</herd>
- <longdescription lang="en">
+<herd>sci</herd>
+<longdescription lang="en">
Eigen is a lightweight C++ template library for vector and matrix math,
a.k.a. linear algebra. Unlike most other linear algebra libraries, Eigen
focuses on the simple mathematical needs of applications: games and other
OpenGL apps, spreadsheets and other office apps, etc. Eigen is dedicated to
providing optimal speed with GCC.
</longdescription>
- <use>
- <flag name="adolc">
+<use>
+ <flag name="adolc">
Enable use for automatic differentiation using <pkg>sci-libs/adolc</pkg>
</flag>
- <flag name="mkl">
+ <flag name="mkl">
Use propertary intel blas/lapack implementation through <pkg>sci-libs/mkl</pkg>
</flag>
- <flag name="sparse">
+ <flag name="sparse">
Enable use for extra sparse matrix with <pkg>sci-libs/umfpack</pkg>, <pkg>sci-libs/cholmod</pkg>, <pkg>sci-libs/superlu</pkg> and <pkg>dev-cpp/sparsehash</pkg>
</flag>
- </use>
+</use>
</pkgmetadata>
diff --git a/dev-java/flexdock/Manifest b/dev-java/flexdock/Manifest
index 4d08759fc..24133d5b6 100644
--- a/dev-java/flexdock/Manifest
+++ b/dev-java/flexdock/Manifest
@@ -1,2 +1,2 @@
-DIST flexdock-1.1.1-src.zip 6163036 SHA256 e0bed4b633dd09da20651d495eb87b985150938564dd124083483c98bda09cf3 SHA512 104398a573b2aade0ed6b848920f8a3903964feabd755c653d8e62ea986251d9c31a07e88308c9cffe7e696c99109a3dfca249f0ca0357e88a896fc5769170f4 WHIRLPOOL 3265875a173911f5635d76824c1c98bc5f0fef3761abc7f5efc3ddc3582f354562391982f6c6f0f286ac2677bafc94237ce09e63ae877da79cad7dfcd50855b9
+DIST flexdock-1.1.1-src.zip 15841 SHA256 54b9140021e8a20818f469bb74b5ebd10750e13215f487553cd523ace9354e30 SHA512 aa0edbe99b58fd3bf644a6ba3feccae31a5983f39252a8c6aa5c6b3170fc8d6312ab07c4a3d94dfd903976258a887d5d63d368aef10ecaee7f781ead1fdf374b WHIRLPOOL 86c94a643f954f43f2fb20a8084995872f9e3919e7dff2bc13461def15f1e9613e110931dbf1803e12c9bd39aa52a1aa3b9b675751737df95073ccd8dd1176e8
DIST flexdock-1.2.0-src.zip 6159196 SHA256 7506b49c902d7d48ef0c06a145327fa9e1166a522e0990e74b37a8936f62ebf5 SHA512 cafdc84037af81c5f2fccb3642cd6db7a2b16b10156c7536c566624ecba9dd42e50cd08dfc0ed49c83e88b07cede6d8c2afb6ed707451c39906dffcf274327d7 WHIRLPOOL 8d06b0840db904f75905927d3990613e18f71cb183a27d4ff2d9c01318cf6a5136b5e4e8cfaed775d9a595c83cabb5aeeaa9d2244b43ab345d7d116fdce98ae8
diff --git a/sci-astronomy/scamp/Manifest b/sci-astronomy/scamp/Manifest
index 59348bdd4..0477bf47b 100644
--- a/sci-astronomy/scamp/Manifest
+++ b/sci-astronomy/scamp/Manifest
@@ -1 +1 @@
-DIST scamp-1.7.0.tar.gz 9214695 RMD160 d73325df23a189e62d0eabdcc35c83bf06638511 SHA1 f54476b0ce8f5f7c5294640a9bb85a877f5ad1c4 SHA256 b8451bd34946fa33c26ea60a12b40ec3c2fa22987564aaaa05205df0728b4d54 SHA512 b5eec73c3a645defeec0f1cf6daa1b0df9e7c009d86764321fc11c003240a85b86544e33fbe2f4337263fe3152120e91efaeabf46b69dd3a1e47b56a594fa6e7 WHIRLPOOL d4dc734fe04b81ecd1e1755ec6ff50a6b53b97001225a01ef6c8c2a64c5d1367f4a2320349509729923f7d12326758cad3d9ed01c4c342567371865951570717
+DIST scamp-1.7.0.tar.gz 9214695 SHA256 b8451bd34946fa33c26ea60a12b40ec3c2fa22987564aaaa05205df0728b4d54 SHA512 b5eec73c3a645defeec0f1cf6daa1b0df9e7c009d86764321fc11c003240a85b86544e33fbe2f4337263fe3152120e91efaeabf46b69dd3a1e47b56a594fa6e7 WHIRLPOOL d4dc734fe04b81ecd1e1755ec6ff50a6b53b97001225a01ef6c8c2a64c5d1367f4a2320349509729923f7d12326758cad3d9ed01c4c342567371865951570717
diff --git a/sci-astronomy/sextractor/Manifest b/sci-astronomy/sextractor/Manifest
index 7581016e5..8a4653e27 100644
--- a/sci-astronomy/sextractor/Manifest
+++ b/sci-astronomy/sextractor/Manifest
@@ -1 +1 @@
-DIST sextractor-2.8.6.tar.gz 3994622 RMD160 98319c54ab3af0d4a91c3ffa70e7d5148b06d67a SHA1 103ac2d51d9bae9fcbc5dda3031d82cd127f8250 SHA256 dde34594c2a1324f0951272e404e55d0d4cb0607f8ea18a61f2563bb67f494ac SHA512 c8847f4feb45000eac02ae8fe9747b6c4a1faf0d8722e87f07699c25d71a1bcd44d8cf88df852453a3a45762deb7420cb79aca1d763543f1253755a59f585b70 WHIRLPOOL 4a8be697df11cac64980e8ee828ea61ba839a67219a9918e941a1354fc3294c80d4442eb7f91202d16315d7f454d73897a156921acd090cff836838f8eba2c29
+DIST sextractor-2.8.6.tar.gz 3994622 SHA256 dde34594c2a1324f0951272e404e55d0d4cb0607f8ea18a61f2563bb67f494ac SHA512 c8847f4feb45000eac02ae8fe9747b6c4a1faf0d8722e87f07699c25d71a1bcd44d8cf88df852453a3a45762deb7420cb79aca1d763543f1253755a59f585b70 WHIRLPOOL 4a8be697df11cac64980e8ee828ea61ba839a67219a9918e941a1354fc3294c80d4442eb7f91202d16315d7f454d73897a156921acd090cff836838f8eba2c29
diff --git a/sci-astronomy/skymaker/Manifest b/sci-astronomy/skymaker/Manifest
index 48564d6a5..c4eaf693d 100644
--- a/sci-astronomy/skymaker/Manifest
+++ b/sci-astronomy/skymaker/Manifest
@@ -1 +1 @@
-DIST skymaker-3.3.3.tar.gz 415740 RMD160 8f9809a1fcf6659a6d76b6d8f6cc1a9154306262 SHA1 781e4e1955a04bfadb74904243ddfd8f507839d5 SHA256 75ddcfcc577591b3ad430171fa867cc7a573bb93f541fd82ef6ebe873c1816f4 SHA512 3980275af2ecf1c35057e61f6368b4bb3ee1428fa7fca366bb8bb373efd70351c4b3caac0e930a3f43aad61440844963e2d684f0f31d9d6517842ba0d61bf93b WHIRLPOOL 4496b40ab6ea19da5e3647cf8f985fa9e443795d20e1a5e0361ab95be1b6b484e88a65e93c47457de39edbab866e72bdba2c4fc919597072741ec0475444a7d7
+DIST skymaker-3.3.3.tar.gz 415740 SHA256 75ddcfcc577591b3ad430171fa867cc7a573bb93f541fd82ef6ebe873c1816f4 SHA512 3980275af2ecf1c35057e61f6368b4bb3ee1428fa7fca366bb8bb373efd70351c4b3caac0e930a3f43aad61440844963e2d684f0f31d9d6517842ba0d61bf93b WHIRLPOOL 4496b40ab6ea19da5e3647cf8f985fa9e443795d20e1a5e0361ab95be1b6b484e88a65e93c47457de39edbab866e72bdba2c4fc919597072741ec0475444a7d7
diff --git a/sci-astronomy/stuff/Manifest b/sci-astronomy/stuff/Manifest
index bfa758acc..e03b87980 100644
--- a/sci-astronomy/stuff/Manifest
+++ b/sci-astronomy/stuff/Manifest
@@ -1 +1 @@
-DIST stuff-1.19.tar.gz 4017086 RMD160 c8ac8d3bbe7cd4a7e48b81b98de60b6c777e6e74 SHA1 acf5b26e5cc10eac757b55b8cca59d5ca3d3ab94 SHA256 592e6bfff704d1391b150a0820b52258ef69a99b698ac07eb0a8f04daf5b0210 SHA512 d4dd26a024a4c1372ede2d0ae642ac3ce9e35715e22705996d6344e9e3054e645f1e662ef975d7fb00aea611720ef8c37153b533e0a1b1d9ffb13f16cafba423 WHIRLPOOL a1949b63e6dd6ac34c3ea1c4190c0f236e4a1f0c8363bf876f9329c1c5252272becf72d1327362c0d0b200629a14fcd012fcf07d6538635f614c8d510d54a189
+DIST stuff-1.19.tar.gz 4017086 SHA256 592e6bfff704d1391b150a0820b52258ef69a99b698ac07eb0a8f04daf5b0210 SHA512 d4dd26a024a4c1372ede2d0ae642ac3ce9e35715e22705996d6344e9e3054e645f1e662ef975d7fb00aea611720ef8c37153b533e0a1b1d9ffb13f16cafba423 WHIRLPOOL a1949b63e6dd6ac34c3ea1c4190c0f236e4a1f0c8363bf876f9329c1c5252272becf72d1327362c0d0b200629a14fcd012fcf07d6538635f614c8d510d54a189