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| -rw-r--r-- | sci-biology/samri/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/samri/samri-0.2.ebuild | 56 |
2 files changed, 57 insertions, 0 deletions
diff --git a/sci-biology/samri/Manifest b/sci-biology/samri/Manifest index 1756e152f..8e2af4995 100644 --- a/sci-biology/samri/Manifest +++ b/sci-biology/samri/Manifest @@ -1 +1,2 @@ DIST samri-0.1.tar.gz 1767390 BLAKE2B 65fd268949b5e0e64d4f3aa9eef0fc7016a9404a468865634e1add74f4b8915f86bb7ee5ec9b8383b48ce0ab51624928cf4a6a65fda4595da67098cb72b00fdc SHA512 2d79a06455fae56edc1324a34186cfce2be4999733c502bbafcf6b310848ef4042012fd8f915f9a3ee7bf26f55398af19da93548d8d96453ba33a2ea22bfe775 +DIST samri-0.2.tar.gz 4091362 BLAKE2B 60cf74873027a0e033af946b48a3a3fe56462d3b7305a9a02bdded022af98bca50eb77b851b4d624816e90a18c18ed4ab17ddae22734de9ff404f5e26ed894b0 SHA512 85d0728bf44c62040d4d05736048a8a8d93ed580db763b07db65546de2891bbbb3036a661309cf37ac8ff256b0dcc28b47d4ce84a5a57bc95f3bcc3c24a5d989 diff --git a/sci-biology/samri/samri-0.2.ebuild b/sci-biology/samri/samri-0.2.ebuild new file mode 100644 index 000000000..3b8f06a60 --- /dev/null +++ b/sci-biology/samri/samri-0.2.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 + +DESCRIPTION="Small Animal Magnetic Resonance Imaging" +HOMEPAGE="https://github.com/IBT-FMI/SAMRI" +SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +IUSE="atlases labbookdb test" +KEYWORDS="~amd64 ~x86" + +# Numpy dependency to circumvent scikits_learn dependency bug: +# https://bugs.gentoo.org/653052 +DEPEND="test? ( sci-biology/samri_bindata )" +RDEPEND=" + dev-python/argh[${PYTHON_USEDEP}] + dev-python/joblib[${PYTHON_USEDEP}] + >=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}] + >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/seaborn[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + >=sci-biology/fsl-5.0.9 + sci-biology/bru2nii + atlases? ( sci-biology/mouse-brain-atlases ) + labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] ) + sci-libs/nibabel[${PYTHON_USEDEP}] + >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}] + >=sci-libs/nipype-0.14.0_pre20170830[${PYTHON_USEDEP}] + sci-libs/pybids[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + sci-biology/ants + sci-biology/afni + sci-biology/nilearn[${PYTHON_USEDEP}] + " + +S="${WORKDIR}/SAMRI-${PV}" + +python_test() { + distutils_install_for_testing + export MPLBACKEND="agg" + export PATH=${TEST_DIR}/scripts:$PATH + export PYTHONIOENCODING=utf-8 + ./test_scripts.sh || die "Test scripts failed." + sed -i -e \ + "/def test_bru2bids():/i@pytest.mark.skip('Removed in full test suite, as this is already tested in `test_scripts.sh`')" \ + samri/pipelines/tests/test_repos.py || die + pytest -vv || die +} |