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-rw-r--r--sci-chemistry/talosn/ChangeLog6
-rw-r--r--sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild (renamed from sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild)13
2 files changed, 17 insertions, 2 deletions
diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
index dea3c84e4..9d358bff2 100644
--- a/sci-chemistry/talosn/ChangeLog
+++ b/sci-chemistry/talosn/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*talosn-4.01.2013.148.15.55-r2 (18 Jun 2013)
+
+ 18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+ -talosn-4.01.2013.148.15.55.ebuild, +talosn-4.01.2013.148.15.55-r2.ebuild:
+ drop upstream path in favour of our
+
*talosn-4.01.2013.148.15.55 (18 Jun 2013)
18 Jun 2013; Justin Lecher <jlec@gentoo.org>
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
index ac569c3a8..648c3420d 100644
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
@@ -15,8 +15,10 @@ LICENSE="all-rights-reserved"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
-RDEPEND=">=virtual/jre-1.5"
-DEPEND="${RDEPEND}"
+DEPEND=">=virtual/jre-1.5"
+RDEPEND="${DEPEND}
+ app-shells/tcsh
+ sci-biology/ncbi-tools"
S="${WORKDIR}"
@@ -26,6 +28,12 @@ src_prepare() {
local s64
use amd64 || s64="_x64"
rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+
+ sed \
+ -e '/setenv TALOSN_DIR/d' \
+ -e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
+ -e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
+ -i talosn_ss || die
}
src_install() {
@@ -54,6 +62,7 @@ src_install() {
cat >> "${T}"/40talosn <<- EOF
TALOSN_DIR="${EPREFIX}/${TALOSN}"
+ #BLASTDB=
EOF
doenvd "${T}"/40talosn
}