diff options
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/bowtie/Manifest | 5 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-2.1.0.ebuild | 6 |
3 files changed, 11 insertions, 7 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog new file mode 100644 index 000000000..1a636c5e1 --- /dev/null +++ b/sci-biology/bowtie/ChangeLog @@ -0,0 +1,7 @@ +# ChangeLog for sci-biology/bowtie +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 28 Sep 2013; Justin Lecher <jlec@gentoo.org> bowtie-2.1.0.ebuild: + Exchange common variables, fix SRC_URI + diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index 9321813d2..8c820d992 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,4 +1 @@ -AUX bowtie-2.1.0-buildsystem.patch 734 SHA256 8cc4d242c2b61a34503bc5f82a8baaa16c50b743751162060cefb9a3a3234587 SHA512 1d1f61e331874acb9503c4002c45b49f58145b3d7fb0e03245029e88f2783eb0ba01a6b47c1238d7c6fb82e9a3d7e103808f957151d79208b889f4a212d424f8 WHIRLPOOL e53d25c40781cb8eaffbd6990e2da6aaf44f56cf96caea7d89db17db55a48546f5308d682593a24b3a421a97d830dd21c047da9eb82138da29e1a7318319f2ab -DIST bowtie-2.1.0-source.zip 5697131 SHA256 90a9d3a6bd19ddc3a8f90b935c6a2288478572de2ad4039b29f91016b95ef4b0 SHA512 47535c0539674d81dfac16bf0f0730c766afce93fa91bef7eb4f73df2b73fb7988bc344495a909f81374a60ec79117b141442ff13a61af96fe4043dc0e47cc7c WHIRLPOOL fca873eb10c514c22e2aa46cce685050234c9d2838b7a66c6d5648425b980d93a627c187f26af16e74c6b70e8addb8c267dab5af68023b65591f8ad2616344fa -EBUILD bowtie-2.1.0.ebuild 1133 SHA256 6a54b6e1b2ac2437fc29bc5e7813312601e176d1786ce607e03e906d54d9ffb5 SHA512 e93d3d51fafb4f39e50a8abf883fa0c6c2df9947a41acf19a69d9cf7432bb411da232545f54925781a7457dec5ca4529bc45a441f188799ec02bc04e66a88f56 WHIRLPOOL cd45fe7e3106861db6e7f0afff34392f13d4c88b2ba7a435f4100e0ad46e13f885514d5c4cf94cbd3d94329bfb4a600314d44b1b2c68bf1955b64ba17a3268f4 -MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3 +DIST bowtie2-2.1.0-source.zip 5697131 SHA256 90a9d3a6bd19ddc3a8f90b935c6a2288478572de2ad4039b29f91016b95ef4b0 SHA512 47535c0539674d81dfac16bf0f0730c766afce93fa91bef7eb4f73df2b73fb7988bc344495a909f81374a60ec79117b141442ff13a61af96fe4043dc0e47cc7c WHIRLPOOL fca873eb10c514c22e2aa46cce685050234c9d2838b7a66c6d5648425b980d93a627c187f26af16e74c6b70e8addb8c267dab5af68023b65591f8ad2616344fa diff --git a/sci-biology/bowtie/bowtie-2.1.0.ebuild b/sci-biology/bowtie/bowtie-2.1.0.ebuild index 26bf770ca..a12279afd 100644 --- a/sci-biology/bowtie/bowtie-2.1.0.ebuild +++ b/sci-biology/bowtie/bowtie-2.1.0.ebuild @@ -8,7 +8,7 @@ inherit eutils toolchain-funcs DESCRIPTION="An ultrafast memory-efficient short read aligner" HOMEPAGE="http://bowtie-bio.sourceforge.net/" -SRC_URI="mirror://sourceforge/bowtie-bio/${P}-source.zip" +SRC_URI="mirror://sourceforge/project/${PN}-bio/${PN}2/${PV}/${PN}2-${PV}-source.zip" LICENSE="GPL-3" SLOT="2" @@ -41,11 +41,11 @@ src_compile() { } src_install() { - dobin bowtie2 bowtie2-* + dobin ${PN}2 ${PN}2-* exeinto /usr/share/${PN}2/scripts doexe scripts/* - newman MANUAL bowtie2.1 + newman MANUAL ${PN}2.1 dodoc AUTHORS NEWS TUTORIAL dohtml doc/manual.html doc/style.css |