diff options
| -rw-r--r-- | profiles/package.mask | 1 | ||||
| -rw-r--r-- | sci-biology/ESTate/ESTate-0.5.ebuild | 50 | ||||
| -rw-r--r-- | sci-biology/ESTate/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/ESTate/metadata.xml | 12 |
4 files changed, 0 insertions, 65 deletions
diff --git a/profiles/package.mask b/profiles/package.mask index a951d2d34..37fdc49bb 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -56,4 +56,3 @@ sci-biology/dawg sci-biology/EBARDenovo sci-biology/ensembl-tools sci-biology/ePCR -sci-biology/ESTate diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild deleted file mode 100644 index f24e85106..000000000 --- a/sci-biology/ESTate/ESTate-0.5.ebuild +++ /dev/null @@ -1,50 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils - -DESCRIPTION="ORF finding despite frameshifts, EST clustering" -HOMEPAGE="http://www.ebi.ac.uk/~guy/estate" -SRC_URI=" - http://www.ebi.ac.uk/~guy/estate/estate.tar.gz - http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -S="${WORKDIR}"/estate - -src_prepare(){ - sed \ - -e "s/^CC/#CC/" \ - -e "s/^LDFLAGS/#LDFLAGS/" \ - -e "s/^CFLAGS/#CFLAGS/" \ - -e "s/LDFLAGS/CFLAGS/" \ - -i src/Makefile || die -} - -src_install(){ - # prevent file collision with sci-biology/hmmer-2.3.2 - newbin bin/{revcomp,revcomp_ESTate} - rm bin/revcomp || die - newbin bin/{translate,translate_ESTate} - rm bin/translate || die - dobin bin/* - doman doc/man/man1/*.1 doc/man/man7/*.7 - - insinto /usr/share/ESTate/etc - doins etc/ESTaterc - - insinto /usr/share/ESTate/example - doins example/embl59* example/drosophila* - - dodoc ANNOUNCE.txt README.txt "${DISTDIR}"/thesis.ps.gz -} - -pkg_postinst() { - optfeature "additional features" sci-biology/wcd -} diff --git a/sci-biology/ESTate/Manifest b/sci-biology/ESTate/Manifest deleted file mode 100644 index 1d8f539be..000000000 --- a/sci-biology/ESTate/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST estate.tar.gz 465176 BLAKE2B 2690e84d658a85d916d9fec123f94749d46cef496a33955bcb151144cbd2342f7e797517373b9e91debf3a1906c22ee0267358a0010358cf78567ce4e25c251b SHA512 a33d9718fb55d421d9ed02e32bfb3d92150a72ee44fbf259886747c3c5ffe0e40fbe55675e9e36775af350f79310e2f994ff2e68266a1d44d1b9e34da20d7812 -DIST thesis.ps.gz 613820 SHA256 ffacc8aef617ee924461c2c4cd74820fde8056667c98c8148f65ff234b568b1b SHA512 d8a289e059b775751b1d0f3089ac8cf15936e7134bf33e5128b6c344d26d2e93c4387688b3261dabeebdcdca05c0a1decfde4ac7f4177a3c6f33a01d4c66d17e WHIRLPOOL 47e86754d9d7b906d1b889490000556c3b5edb4678125923839d6c3114a461e063fe05a765db6a494ff2a664883493a2774b22a0233f5845e5a06c2d9e96c9ad diff --git a/sci-biology/ESTate/metadata.xml b/sci-biology/ESTate/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/ESTate/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> |