diff options
| -rw-r--r-- | sci-biology/codonw/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/codonw/codonw-1.4.4-r1.ebuild | 12 | ||||
| -rw-r--r-- | sci-biology/rnaplex/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/rnaplex/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/rnaplex/rnaplex-0.2.ebuild | 14 | ||||
| -rw-r--r-- | sci-chemistry/dssp2pdb/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-chemistry/dssp2pdb/dssp2pdb-0.03.ebuild | 4 | ||||
| -rw-r--r-- | sci-libs/arrayfire/arrayfire-9999.ebuild | 13 |
8 files changed, 35 insertions, 27 deletions
diff --git a/sci-biology/codonw/ChangeLog b/sci-biology/codonw/ChangeLog index d2f9cc3d5..00b6629e0 100644 --- a/sci-biology/codonw/ChangeLog +++ b/sci-biology/codonw/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/codonw -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 10 Jan 2015; Marius Brehler <marbre@linux.sungazer.de> + condow-1.4.4-r1.ebuild: + Move to EAPI=5. + *codonw-1.4.4-r1 (08 Nov 2010) 08 Nov 2010; Kacper Kowalik <xarthisius@gentoo.org> -codonw-1.4.4.ebuild, diff --git a/sci-biology/codonw/codonw-1.4.4-r1.ebuild b/sci-biology/codonw/codonw-1.4.4-r1.ebuild index f7f48e13b..85c0c5e9e 100644 --- a/sci-biology/codonw/codonw-1.4.4-r1.ebuild +++ b/sci-biology/codonw/codonw-1.4.4-r1.ebuild @@ -1,8 +1,8 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=2 +EAPI=5 inherit toolchain-funcs versionator @@ -26,14 +26,14 @@ src_prepare() { } src_compile() { - emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" || die + emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" } src_install() { - dobin codonw || die + dobin codonw # woohoo watch out for collisions for i in rscu cu aau raau tidy reader cutab cutot transl bases base3s dinuc cai fop gc3s gc cbi enc; do - dosym codonw /usr/bin/${i} || die + dosym codonw /usr/bin/${i} done - dodoc *.txt || die + dodoc *.txt } diff --git a/sci-biology/rnaplex/ChangeLog b/sci-biology/rnaplex/ChangeLog index a960c4ffe..dbdac52b3 100644 --- a/sci-biology/rnaplex/ChangeLog +++ b/sci-biology/rnaplex/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/rnaplex -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 10 Jan 2015; Marius Brehler <marbre@linux.sungazer.de> + rnaplex-0.2.ebuild: + Move to EAPI=5; Update homepage and SRC_URI; Cleanup. + 29 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: New package, ebuild written by me diff --git a/sci-biology/rnaplex/Manifest b/sci-biology/rnaplex/Manifest index 3a17125fb..173cda438 100644 --- a/sci-biology/rnaplex/Manifest +++ b/sci-biology/rnaplex/Manifest @@ -1 +1 @@ -DIST RNAplex-0.2.tar.gz 581128 SHA256 7907873009c8fc03b1918400bb82122774bc5df2602adc1426c5686a0b3f37de +DIST RNAplex-0.2.tar.gz 579904 SHA256 a30ab9128e4b35795f5e6f1e32a8a66b6fe3de1b6395a4326081cc6bec99cebb SHA512 ef91dd869284ad492b627b84288fe3c56a7c8d44dec8d2a48668efa4e476c9e7856380bc1e199604db4fa53f4d9bfe38cf057f2e181bf1b24ad375e5691a0a2e WHIRLPOOL bbba8f625373a5f0ae791c0e3239fb188764607635b79fe41ad364f71e34ed3fb018ba7aa629584cfa995b68e7c3bcf3ea67862e14686fec023de256b65ce423 diff --git a/sci-biology/rnaplex/rnaplex-0.2.ebuild b/sci-biology/rnaplex/rnaplex-0.2.ebuild index f2a91990c..d9e693b85 100644 --- a/sci-biology/rnaplex/rnaplex-0.2.ebuild +++ b/sci-biology/rnaplex/rnaplex-0.2.ebuild @@ -1,24 +1,18 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=2 +EAPI=5 MY_P=RNAplex-${PV} DESCRIPTION="RNA-RNA interaction search" -HOMEPAGE="http://www.tbi.univie.ac.at/~htafer/" -SRC_URI="http://www.tbi.univie.ac.at/~htafer/RNAplex/${MY_P}.tar.gz" +HOMEPAGE="http://www.bioinf.uni-leipzig.de/Software/RNAplex/" +SRC_URI="http://www.bioinf.uni-leipzig.de/Software/RNAplex/${MY_P}.tar.gz" LICENSE="GPL-2" SLOT="0" IUSE="" KEYWORDS="~amd64 ~x86" -DEPEND="" -RDEPEND="" S=${WORKDIR}/${MY_P} - -src_install() { - emake DESTDIR="${D}" install || die "install failed" -} diff --git a/sci-chemistry/dssp2pdb/ChangeLog b/sci-chemistry/dssp2pdb/ChangeLog index 62c0f7426..5237a5f45 100644 --- a/sci-chemistry/dssp2pdb/ChangeLog +++ b/sci-chemistry/dssp2pdb/ChangeLog @@ -1,7 +1,10 @@ # ChangeLog for sci-chemistry/dssp2pdb -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 11 Jan 2015; Justin Lecher <jlec@gentoo.org> dssp2pdb-0.03.ebuild: + Fix S + 11 Nov 2014; Justin Lecher <jlec@gentoo.org> dssp2pdb-0.03.ebuild, metadata.xml: Bump to EAPI=5 diff --git a/sci-chemistry/dssp2pdb/dssp2pdb-0.03.ebuild b/sci-chemistry/dssp2pdb/dssp2pdb-0.03.ebuild index bef71e6ae..cebb6cabc 100644 --- a/sci-chemistry/dssp2pdb/dssp2pdb-0.03.ebuild +++ b/sci-chemistry/dssp2pdb/dssp2pdb-0.03.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -18,6 +18,8 @@ RDEPEND=" sci-chemistry/dssp" DEPEND="" +S="${WORKDIR}" + src_install() { dobin ${PN} } diff --git a/sci-libs/arrayfire/arrayfire-9999.ebuild b/sci-libs/arrayfire/arrayfire-9999.ebuild index a1af26b91..107af240e 100644 --- a/sci-libs/arrayfire/arrayfire-9999.ebuild +++ b/sci-libs/arrayfire/arrayfire-9999.ebuild @@ -4,12 +4,14 @@ EAPI=5 -inherit cmake-utils git-r3 unpacker +inherit cmake-utils git-r3 + +GTEST_PV="1.7.0" DESCRIPTION="A general purpose GPU library." HOMEPAGE="http://www.arrayfire.com/" EGIT_REPO_URI="https://github.com/arrayfire/arrayfire.git" -SRC_URI="test? ( https://googletest.googlecode.com/files/gtest-1.7.0.zip )" +SRC_URI="test? ( https://googletest.googlecode.com/files/gtest-${GTEST_PV}.zip )" KEYWORDS="~amd64" LICENSE="BSD" @@ -22,8 +24,7 @@ RDEPEND=" virtual/cblas cuda? ( >=dev-util/nvidia-cuda-toolkit-6.0 ) sci-libs/fftw:3.0" -DEPEND="${RDEPEND} - test? ( app-arch/unzip )" +DEPEND="${RDEPEND}" BUILD_DIR="${S}/build" CMAKE_BUILD_TYPE=Release @@ -52,8 +53,8 @@ src_unpack() { if use test; then mkdir -p "${BUILD_DIR}"/third_party/src/ || die cd "${BUILD_DIR}"/third_party/src/ || die - unpack_zip "${DISTDIR}/"gtest-1.7.0.zip - mv "${BUILD_DIR}"/third_party/src/gtest-1.7.0 "${BUILD_DIR}"/third_party/src/googletest || die + unpack ${A} + mv "${BUILD_DIR}"/third_party/src/gtest-"${GTEST_PV}" "${BUILD_DIR}"/third_party/src/googletest || die fi } |