diff options
| -rw-r--r-- | sci-biology/sff_dump/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/sff_dump/Manifest | 15 | ||||
| -rw-r--r-- | sci-biology/sff_dump/sff_dump-1.04.ebuild | 26 |
3 files changed, 34 insertions, 14 deletions
diff --git a/sci-biology/sff_dump/ChangeLog b/sci-biology/sff_dump/ChangeLog new file mode 100644 index 000000000..a9d53a380 --- /dev/null +++ b/sci-biology/sff_dump/ChangeLog @@ -0,0 +1,7 @@ +# ChangeLog for sci-biology/sff_dump +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 24 Jun 2011; Justin Lecher <jlec@gentoo.org> sff_dump-1.04.ebuild: + Some ebuild cleaning + diff --git a/sci-biology/sff_dump/Manifest b/sci-biology/sff_dump/Manifest index b0cb07b6a..f38058e05 100644 --- a/sci-biology/sff_dump/Manifest +++ b/sci-biology/sff_dump/Manifest @@ -1,3 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + DIST sff_dump-1.04.tgz 55640 RMD160 4a83c4dd8427e101d15e28987434638408a6eb83 SHA1 ad2854724029ad476fe1719d6953cc9a58338f5f SHA256 94bfeb55bc146f2e0183a0b85622e3fa19772d4d2fb324332d72f4cc5a4104ba -EBUILD sff_dump-1.04.ebuild 726 RMD160 38282c68b9ad8d2cee6a231ce2e1588c21821457 SHA1 b08fdad83744f79b57f42eed3c81284dcbe61866 SHA256 1284a3166910f60acb0b9632151b321335a6007e85e06359f9260b0e5c333e62 -MISC metadata.xml 261 RMD160 ce19afc5fdd536a9eadb35a705f09613e3774e32 SHA1 b95b491e808c8dd5a106edae7e48af4f8d61f58a SHA256 e3766426d46af16432093cd9fb8a2df3862c77ef313ad175ca2ef60af5cee6f5 +EBUILD sff_dump-1.04.ebuild 647 RMD160 feb6f52b46dca5dd4cdb197d169e697c746f24ec SHA1 e679e8d5a0139cf70bc096f9e10850d85f7aa0cb SHA256 4ad2b394ec9bb964d23e5cfb73f6900b4b0a5f6d3c5f52bc9f775d43f78c5af8 +MISC ChangeLog 214 RMD160 dfffb7d56e057849bb97f3123e34689f4cc6cc92 SHA1 2ff87865fce952cc2733a9da6fcf0588cc82122b SHA256 64ffd81ec69e04e05f9c7ae23d0e8dd6b4ab1d358d8714a80c5dc0f37c9377e7 +MISC metadata.xml 269 RMD160 53c242e331b0a82669ca7913da16dac854ab8dca SHA1 bc75ba3b0f5607ac5f396d3e8a99daf5ded5a7de SHA256 13472fd0615d2b381dbe36666fe1bbf3b1c34770aa409c6101b38741b4586f85 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.17 (GNU/Linux) + +iEYEARECAAYFAk4EzfwACgkQgAnW8HDreRaHkwCfVH92rc6/kopE+JHXd/80Tefl +IvgAnRaD/+vCOGHzdVV1aKPkVpSkzpQ1 +=plyn +-----END PGP SIGNATURE----- diff --git a/sci-biology/sff_dump/sff_dump-1.04.ebuild b/sci-biology/sff_dump/sff_dump-1.04.ebuild index 136e7276b..b0942764d 100644 --- a/sci-biology/sff_dump/sff_dump-1.04.ebuild +++ b/sci-biology/sff_dump/sff_dump-1.04.ebuild @@ -1,28 +1,30 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=3 +EAPI=4 -DESCRIPTION="Convert Roche SFF files to FASTA file format (alternative to sffdump from Roche and sff_extract from mira)" +inherit toolchain-funcs + +DESCRIPTION="Convert Roche SFF files to FASTA file format" HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf" -SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/sff_dump-1.04.tgz" +SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/${P}.tgz" LICENSE="FLI-Jena" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" -DEPEND="" -RDEPEND="${DEPEND}" - src_prepare(){ - sed -i 's:^CC :#CC :' Makefile - sed -i 's:^LD :#LD :' Makefile - sed -i 's:^CFLAGS.*:CFLAGS+= -D__LINUX__ -Wcast-align:' Makefile - sed -i 's:^LDFLAGS=:#LDFLAGS=:' Makefile + sed \ + -e 's:^CC :#CC :' \ + -e 's:^LD :#LD :' \ + -e 's:^CFLAGS.*:CFLAGS+= -D__LINUX__ -Wcast-align:' \ + -e 's:^LDFLAGS=:#LDFLAGS=:' \ + -i Makefile || die + tc-export CC LD } src_install(){ - dobin sff_dump || die + dobin sff_dump } |