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-rw-r--r--profiles/package.mask2
-rw-r--r--sci-libs/jhdf5/Manifest1
-rw-r--r--sci-libs/jhdf5/jhdf5-19.04.0.ebuild37
-rw-r--r--sci-libs/jhdf5/metadata.xml12
4 files changed, 0 insertions, 52 deletions
diff --git a/profiles/package.mask b/profiles/package.mask
index a5e397fa4..d86099342 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -50,7 +50,5 @@ dev-java/jcommon
dev-java/skinlf
dev-java/jrosetta
dev-java/freehep-graphicsio-emf
-# depends on dev-java/args4j which is being last-rited from ::gentoo
-sci-libs/jhdf5
# ancient java, can't update due to gradle/maven limitation
dev-java/htsjdk
diff --git a/sci-libs/jhdf5/Manifest b/sci-libs/jhdf5/Manifest
deleted file mode 100644
index 0adcfacbb..000000000
--- a/sci-libs/jhdf5/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST sis-jhdf5-19.04.0.zip 16667536 BLAKE2B 54f7fa368cdcc04a4d22fcf761627a6a29c96643840b0185ab2b6ea7f65c72923cb21d80f52e3d441f2c50fe916047243bd00a2ab7f604bb46c0cc610f5b6fa6 SHA512 ea5fd9554d3729193252e97610f5643168dd927d6009e2f2c2e65e0ea838f8e1be942a9ee15d542740a6ec6f68a7c288cf33eea36dabcb9191814f66d209aa79
diff --git a/sci-libs/jhdf5/jhdf5-19.04.0.ebuild b/sci-libs/jhdf5/jhdf5-19.04.0.ebuild
deleted file mode 100644
index 588503cfe..000000000
--- a/sci-libs/jhdf5/jhdf5-19.04.0.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit java-pkg-2 java-ant-2
-
-DESCRIPTION="Java binding for HDF5 compatible with HDF5 1.6/1.8"
-HOMEPAGE="https://wiki-bsse.ethz.ch/display/JHDF5"
-SRC_URI="https://wiki-bsse.ethz.ch/download/attachments/26609237/sis-jhdf5-${PV}.zip"
-# first SIS release: https://wiki-bsse.ethz.ch/download/attachments/26609237/sis-jhdf5-14.12.0-r33145.zip
-# last CISD release: https://wiki-bsse.ethz.ch/download/attachments/26609237/cisd-jhdf5-13.06.2-r29633.zip
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS="~amd64"
-
-DEPEND="
- >=virtual/jdk-1.7:*
- app-arch/unzip
- dev-java/args4j:*
- dev-java/commons-io:*
- dev-java/commons-lang:*
-"
-RDEPEND="${DEPEND}
- >=virtual/jre-1.7:*"
-
-S="${WORKDIR}/sis-jhdf5"
-
-src_install() {
- dobin bin/h5ar
- java-pkg_newjar lib/sis-${P}.jar sis-${PN}.jar
- java-pkg_dolauncher sis-${PN} --jar sis-${PN}.jar
- java-pkg_newjar lib/sis-${PN}-h5ar-cli-${PV}.jar sis-${PN}-h5ar-cli.jar
- java-pkg_dolauncher sis-${PN}-h5ar-cli --jar sis-${PN}-h5ar-cli.jar
- dodoc doc/JHDF5-${PV}.*
-}
diff --git a/sci-libs/jhdf5/metadata.xml b/sci-libs/jhdf5/metadata.xml
deleted file mode 100644
index 138cb7705..000000000
--- a/sci-libs/jhdf5/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>