diff options
| -rw-r--r-- | sci-biology/allpathslg/ChangeLog | 80 | ||||
| -rw-r--r-- | sci-biology/allpathslg/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/allpathslg/allpathslg-52415.ebuild | 40 | ||||
| -rw-r--r-- | sci-biology/allpathslg/metadata.xml | 5 |
4 files changed, 0 insertions, 126 deletions
diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog deleted file mode 100644 index 41ef43838..000000000 --- a/sci-biology/allpathslg/ChangeLog +++ /dev/null @@ -1,80 +0,0 @@ -# ChangeLog for sci-biology/allpathslg -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.16 2013/11/13 02:34:46 patrick Exp $ - - 30 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> - allpathslg-52415.ebuild: - sci-biology/allpathslg: noted another home-like web page - - 13 Nov 2013; Patrick Lauer <patrick@gentoo.org> allpathslg-42337.ebuild, - allpathslg-47093.ebuild: - Removing x86 keyword as dependency sci-biology/vaal does not work on x86 - -*allpathslg-47093 (17 Jul 2013) - - 17 Jul 2013; Justin Lecher <jlec@gentoo.org> allpathslg-42337.ebuild, - +allpathslg-47093.ebuild: - Version Bump - - 11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml: - Drop Andrey as maintainer so that bugs get assigned to sci-biology directly - - 20 Feb 2013; Justin Lecher <jlec@gentoo.org> -allpathslg-37578.ebuild: - Drop old - - 20 Feb 2013; Agostino Sarubbo <ago@gentoo.org> allpathslg-42337.ebuild: - Stable for amd64, wrt bug #458106 - - 18 Feb 2013; Justin Lecher <jlec@gentoo.org> -allpathslg-41839.ebuild, - metadata.xml: - Drop old - - 14 Dec 2012; Ulrich Müller <ulm@gentoo.org> allpathslg-37578.ebuild, - allpathslg-41839.ebuild, allpathslg-42337.ebuild: - Fix LICENSE, MIT (Expat) according to COPYING file. - - 19 Nov 2012; Justin Lecher <jlec@gentoo.org> allpathslg-37578.ebuild, - allpathslg-41839.ebuild, allpathslg-42337.ebuild: - Block sci-biology/allpaths due to file collision, #443740 - -*allpathslg-42337 (09 Jul 2012) - - 09 Jul 2012; Justin Lecher <jlec@gentoo.org> +allpathslg-42337.ebuild: - Version bump, fix compilation errors with gcc-4.7, #425472 - -*allpathslg-41839 (29 May 2012) - - 29 May 2012; Andrey Kislyuk <weaver@gentoo.org> -allpathslg-38573.ebuild, - -allpathslg-40063.ebuild, +allpathslg-41839.ebuild: - version bump - -*allpathslg-40063 (28 Dec 2011) - - 28 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> - -allpathslg-35725-r1.ebuild, +allpathslg-40063.ebuild: - Version bump, remove old - - 15 Oct 2011; Markos Chandras <hwoarang@gentoo.org> allpathslg-37578.ebuild: - Stable on amd64 wrt bug #384379 - -*allpathslg-38573 (25 Sep 2011) - - 25 Sep 2011; Andrey Kislyuk <weaver@gentoo.org> +allpathslg-38573.ebuild: - Version bump - -*allpathslg-37578 (20 Jun 2011) - - 20 Jun 2011; Andrey Kislyuk <weaver@gentoo.org> +allpathslg-37578.ebuild: - Version bump - -*allpathslg-35725-r1 (27 Jan 2011) - - 27 Jan 2011; Andrey Kislyuk <weaver@gentoo.org> -allpathslg-35725.ebuild, - +allpathslg-35725-r1.ebuild: - Drop ~x86, avoid collision with sci-biology/vaal - -*allpathslg-35725 (25 Jan 2011) - - 25 Jan 2011; Andrey Kislyuk <weaver@gentoo.org> +allpathslg-35725.ebuild, - +metadata.xml: - Package move from sci-biology/allpaths and version bump diff --git a/sci-biology/allpathslg/Manifest b/sci-biology/allpathslg/Manifest deleted file mode 100644 index 017e9b530..000000000 --- a/sci-biology/allpathslg/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST allpathslg-52415.tar.gz 3129266 SHA256 3c62024a0eacdc223bc727be4718da644fb302f785c7c7347a09ff422ce96362 SHA512 afe25b07d2e07dee3ced2283ffe858f24acfb35d53e9c11fcbcc47373594453d798c344d5604eb24d5c8d3685a185a3b8807bb3547d8066cbaab8d8cf927d1d6 WHIRLPOOL de15dfeddeca2f64fd8780839c45096c28cb47ec219d781f6754f9cf65ad6dfc39b8a48aaa2c36f777282fb08ac78ef8cd04c2e1d79f4f797710d3bb38792785 diff --git a/sci-biology/allpathslg/allpathslg-52415.ebuild b/sci-biology/allpathslg/allpathslg-52415.ebuild deleted file mode 100644 index ff7bdcaf2..000000000 --- a/sci-biology/allpathslg/allpathslg-52415.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-42337.ebuild,v 1.6 2013/11/13 02:34:46 patrick Exp $ - -EAPI=4 - -inherit autotools flag-o-matic - -DESCRIPTION="De novo assembly of whole-genome shotgun microreads" -# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12 -HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" -SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -IUSE="" -KEYWORDS="~amd64" - -# as of release 44849, GCC 4.7.0 (or higher) is required -# seems pre gcc-4.7 users must stay with: -# ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz -DEPEND=" - >=sys-devel/gcc-4.7 - dev-libs/boost - !sci-biology/allpaths - sci-biology/vaal" -RDEPEND="" - -src_prepare() { - sed -i 's/-ggdb3//' configure.ac || die - eautoreconf -} - -src_install() { - einstall || die - # Provided by sci-biology/vaal - for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do - rm "${D}/usr/bin/$i" || die - done -} diff --git a/sci-biology/allpathslg/metadata.xml b/sci-biology/allpathslg/metadata.xml deleted file mode 100644 index f17a827e3..000000000 --- a/sci-biology/allpathslg/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <herd>sci-biology</herd> -</pkgmetadata> |