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| -rw-r--r-- | sci-biology/biobambam/metadata.xml | 15 | ||||
| -rw-r--r-- | sci-libs/libmaus/metadata.xml | 14 |
2 files changed, 29 insertions, 0 deletions
diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml new file mode 100644 index 000000000..9dab65018 --- /dev/null +++ b/sci-biology/biobambam/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-biology</herd> +<longdescription lang="en"> +This package contains some tools for processing BAM files including + +bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name +bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field +bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column +bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading. +bamsort: reads BAM and writes BAM resorted by coordinates or query name +bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name +</longdescription> +</pkgmetadata> diff --git a/sci-libs/libmaus/metadata.xml b/sci-libs/libmaus/metadata.xml new file mode 100644 index 000000000..3d9263653 --- /dev/null +++ b/sci-libs/libmaus/metadata.xml @@ -0,0 +1,14 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-libs</herd> +<longdescription lang="en"> +libmaus is a collection of data structures and algorithms. It contains + +I/O classes (single byte and UTF-8) + bitio classes (input, output and various forms of bit level manipulation) + text indexing classes (suffix and LCP array, fulltext and minute (FM), ...) + BAM sequence alignment files input/output (simple and collating) + and many lower level support classes. +</longdescription> +</pkgmetadata> |