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-rw-r--r--licenses/RASLIC59
-rw-r--r--sci-biology/ncbi-tools++/ChangeLog7
-rw-r--r--sci-biology/ncbi-tools++/Manifest4
-rw-r--r--sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild70
-rw-r--r--sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15.ebuild76
-rw-r--r--sci-chemistry/jligand/ChangeLog10
-rw-r--r--sci-chemistry/jligand/Manifest4
-rw-r--r--sci-chemistry/jligand/jligand-0.1.ebuild41
-rw-r--r--sci-chemistry/jligand/metadata.xml (renamed from sci-biology/ncbi-tools++/metadata.xml)9
-rw-r--r--sci-chemistry/tinker/ChangeLog6
-rw-r--r--sci-chemistry/tinker/Manifest4
-rw-r--r--sci-chemistry/tinker/tinker-5.0.ebuild (renamed from sci-chemistry/tinker/tinker-4.2-r2.ebuild)12
-rw-r--r--sci-libs/balbes-db/ChangeLog6
-rw-r--r--sci-libs/balbes-db/Manifest4
-rw-r--r--sci-libs/balbes-db/balbes-db-6.1.1-r3.ebuild (renamed from sci-libs/balbes-db/balbes-db-6.1.1-r2.ebuild)4
15 files changed, 144 insertions, 172 deletions
diff --git a/licenses/RASLIC b/licenses/RASLIC
new file mode 100644
index 000000000..eac150132
--- /dev/null
+++ b/licenses/RASLIC
@@ -0,0 +1,59 @@
+
+Creative endeavors depend on the lively exchange of ideas. There are laws
+and customs which establish rights and responsibilities for authors and the
+users of what authors create. This notice is not intended to prevent you
+from using the software and documents in this package, but to ensure that
+there are no misunderstandings about terms and conditions of such use.
+
+Please read the following notice carefully. If you do not understand any
+portion of this notice, please seek appropriate professional legal advice
+before making use of the software and documents included in this software
+package. In addition to whatever other steps you may be obliged to take to
+respect the intellectual property rights of the various parties involved, if
+you do make use of the software and documents in this package, please give
+credit where credit is due by citing this package, its authors and the URL
+or other source from which you obtained it, or equivalent primary references
+in the literature with the same authors.
+
+Some of the software and documents included within this software package are
+the intellectual property of various parties, and placement in this package
+does not in any way imply that any such rights have in any way been waived
+or diminished.
+
+With respect to any software or documents for which a copyright exists, ALL
+RIGHTS ARE RESERVED TO THE OWNERS OF SUCH COPYRIGHT.
+
+Even though the authors of the various documents and software found here
+have made a good faith effort to ensure that the documents are correct and
+that the software performs according to its documentation, and we would
+greatly appreciate hearing of any problems you may encounter, the programs
+and documents any files created by the programs are provided **AS IS**
+without any warranty as to correctness, merchantability or fitness for any
+particular or general use.
+
+THE RESPONSIBILITY FOR ANY ADVERSE CONSEQUENCES FROM THE USE OF PROGRAMS OR
+DOCUMENTS OR ANY FILE OR FILES CREATED BY USE OF THE PROGRAMS OR DOCUMENTS
+LIES SOLELY WITH THE USERS OF THE PROGRAMS OR DOCUMENTS OR FILE OR FILES AND
+NOT WITH AUTHORS OF THE PROGRAMS OR DOCUMENTS.
+
+Subject to your acceptance of the conditions stated above, and your respect
+for the terms and conditions stated in the notices below, if you are not
+going to make any modifications or create derived works, you are given
+permission to freely copy and distribute this package, provided you do the
+following:
+
+ * 1. Either include the complete documentation, especially the file
+ NOTICE, with what you distribute or provide a clear indication where
+ people can get a copy of the documentation; and
+ * 2. Give credit where credit is due citing the version and original
+ authors properly; and
+ * 3. Do not give anyone the impression that the original authors are
+ providing a warranty of any kind.
+
+In addition, you may also modify this package and create derived works
+provided you do the following:
+
+ * 4. Explain in your documentation how what you did differs from this
+ version of RasMol; and
+ * 5. Make your modified source code available.
+
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
deleted file mode 100644
index e611ad790..000000000
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ /dev/null
@@ -1,7 +0,0 @@
-# ChangeLog for sci-biology/ncbi-tools++
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
- 28 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
- New package, ebuild written by me
-
diff --git a/sci-biology/ncbi-tools++/Manifest b/sci-biology/ncbi-tools++/Manifest
deleted file mode 100644
index 2ee791459..000000000
--- a/sci-biology/ncbi-tools++/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST ncbi_cxx--Dec_31_2008.tar.gz 13038519 RMD160 cd9427eae2db895cb509e6d3c6d61d5095b9f98f SHA1 ac3ffbcd1a7ab3d409f0480112657cb9cb956422 SHA256 79bdd721bde6a5347edc5a777b79621068d36ad7a7c8d99ef66b58dc58035bac
-EBUILD ncbi-tools++-2008.12.31.ebuild 1682 RMD160 61d4d7cd91180b97df06def6271ca8b4d89a81dd SHA1 b2d0963f3afbeb6dcead3699dc2462755ebd6a68 SHA256 43394c2a5b22eee7f42fa066600e4e111b5efcf5891e42d39fcea6c349d9005f
-MISC ChangeLog 223 RMD160 a57be8cda01f645a4a5985c43304e55d6531a54a SHA1 6dd7e594e16e93c4b4c884ab8bfc43b1d8553cea SHA256 ee0b81396c642b4e40e07316a618f46fc29397687628c151abafe371c51c2871
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild
deleted file mode 100644
index fce828460..000000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-2008.12.31.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI="2"
-
-inherit multilib
-
-MY_P="ncbi_cxx--Dec_31_2008"
-
-DESCRIPTION="NCBI C++ Toolkit"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
-SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Dec_31_2008/${MY_P}.tar.gz"
-
-LICENSE="public-domain"
-SLOT="0"
-IUSE="X unicode opengl gnutls -minimal"
-KEYWORDS="~amd64 ~x86"
-
-# wxGTK: must run eselect wxwindows after installing wxgtk or build will fail. Check and abort here.
-# dev-libs/xalan-c
-# X? ( x11-libs/fltk
-# x11-libs/wxGTK )
-DEPEND="!minimal? ( dev-libs/libxml2
- dev-libs/libxslt
- dev-db/sqlite:3
- dev-libs/xerces-c
- media-libs/libpng
- media-libs/tiff
- media-libs/jpeg
- x11-libs/libXpm
- dev-libs/lzo:2
- app-text/sablotron
- dev-libs/boost
- unicode? ( dev-libs/icu )
- opengl? ( media-libs/glut
- media-libs/mesa )
- gnutls? ( net-libs/gnutls ) )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_configure() {
- # econf fails
- "${S}"/configure --without-debug --with-bin-release --prefix="${D}"/usr \
- --libdir="${D}"/usr/$(get_libdir) \
- --with-z="/usr" \
- --with-bz2="/usr" \
- --with-pcre="/usr" \
- --with-openssl="/usr" \
- --with-icu="/usr" \
- --with-boost="/usr" \
- --with-fltk="/usr" \
- --with-mesa="/usr" \
- --with-glut="/usr" \
- --with-sablot="/usr" \
- --without-wxwidgets \
- || die
-# --with-wxwidgets="/usr" \
-}
-
-src_compile() {
- emake all_r -C GCC412-Release64/build || die
-}
-
-src_install() {
- emake install || die
- # File collisions with sci-biology/ncbi-tools. TODO: check for more
- (cd "${D}/usr"; rm -f bin/asn2asn bin/rpsblast bin/test_regexp lib64/libblast.a)
-}
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15.ebuild
deleted file mode 100644
index 35cea00da..000000000
--- a/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8.ebuild,v 1.2 2009/03/15 17:58:50 maekke Exp $
-
-# TODO: testing on x86
-
-EAPI="2"
-
-inherit multilib
-
-MY_TAG="May_15_2009"
-MY_Y="${TAG/*_/}"
-MY_P="ncbi_cxx--${MY_TAG}"
-
-DESCRIPTION="NCBI C++ Toolkit"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
-SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz"
-
-LICENSE="public-domain"
-SLOT="0"
-IUSE="X unicode opengl gnutls -minimal"
-KEYWORDS="~amd64 ~x86"
-
-# wxGTK: must run eselect wxwindows after installing wxgtk or build will fail. Check and abort here.
-# dev-libs/xalan-c - problems detecting, api mismatch?
-DEPEND="!minimal? ( dev-libs/libxml2
- dev-libs/libxslt
- dev-db/sqlite:3
- dev-libs/xerces-c
- media-libs/libpng
- media-libs/tiff
- media-libs/jpeg
- x11-libs/libXpm
- dev-libs/lzo:2
- app-text/sablotron
- dev-libs/boost
- unicode? ( dev-libs/icu )
- opengl? ( media-libs/glut
- media-libs/mesa )
- gnutls? ( net-libs/gnutls )
- X? ( x11-libs/fltk
- x11-libs/wxGTK ) )"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}"
-
-src_configure() {
- # econf fails
- "${S}"/configure --without-debug --with-bin-release --prefix="${D}"/usr \
- --libdir="${D}"/usr/$(get_libdir) \
- --with-z="/usr" \
- --with-bz2="/usr" \
- --with-pcre="/usr" \
- --with-openssl="/usr" \
- --with-icu="/usr" \
- --with-boost="/usr" \
- --with-fltk="/usr" \
- --with-mesa="/usr" \
- --with-glut="/usr" \
- --with-sablot="/usr" \
- --without-wxwidgets \
- || die
-# --with-xalan="/usr" \
-# --with-wxwidgets="/usr" \
-}
-
-src_compile() {
- emake all_r -C GCC*-Release*/build || die
-}
-
-src_install() {
- emake install || die
- # File collisions with sci-biology/ncbi-tools
- rm -f "${D}"/usr/bin/{asn2asn,rpsblast,test_regexp}
- rm -f "${D}"/usr/$(get_libdir)/libblast.a
-}
diff --git a/sci-chemistry/jligand/ChangeLog b/sci-chemistry/jligand/ChangeLog
new file mode 100644
index 000000000..c3d064bc1
--- /dev/null
+++ b/sci-chemistry/jligand/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/jligand
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*jligand-0.1 (26 Jul 2009)
+
+ 26 Jul 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+ +jligand-0.1.ebuild, +metadata.xml:
+ new ebuild, written by me
+
diff --git a/sci-chemistry/jligand/Manifest b/sci-chemistry/jligand/Manifest
new file mode 100644
index 000000000..807f74f8e
--- /dev/null
+++ b/sci-chemistry/jligand/Manifest
@@ -0,0 +1,4 @@
+DIST JLigand_0.1_Source.tar 583680 RMD160 be71bdaeb1991c96c05d6864427606dbcad5c2eb SHA1 1805e737124c9fc483279a1aa37b0612a9e8d062 SHA256 12578dbe2212a6cc12ede15beecb6e20c5ba28a467883a881f700b908f493de6
+EBUILD jligand-0.1.ebuild 1079 RMD160 d4e7fc4f04fb8d17f4e1d1b7c8722e80e9b1f609 SHA1 c0c20c4719578acc2da1465a3259540ee6acdd59 SHA256 dce92c9463d78ec39d6035ae4a35d1445645282aa7fcc029aa15293407fe30b1
+MISC ChangeLog 274 RMD160 191da1077cab8086237bfbcb96e7d0fcd313a859 SHA1 7152a54527147adc6f35fbb0fec26a1cc70f7912 SHA256 a4c165f42617e7619b9eef2c3ae1266b6a4f465b41cd52497917c067bc4d4a49
+MISC metadata.xml 215 RMD160 bc9c07aa91f2f175542244e4e4522a73558210a1 SHA1 facb283386de1c0b6b938cdcd4dde04d1694298b SHA256 13f32353652adbd3d934d41381cfc2cacc9e1127c508cebc73806cc1026ee80c
diff --git a/sci-chemistry/jligand/jligand-0.1.ebuild b/sci-chemistry/jligand/jligand-0.1.ebuild
new file mode 100644
index 000000000..7336939b8
--- /dev/null
+++ b/sci-chemistry/jligand/jligand-0.1.ebuild
@@ -0,0 +1,41 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI="2"
+
+inherit java-pkg-2 java-ant-2 multilib
+
+MY_PN="JLigand"
+
+DESCRIPTION="a Java interface which allows links descriptions to be created"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~pyoung/JLigand/JLigand.html"
+SRC_URI="http://www.ysbl.york.ac.uk/~pyoung/${MY_PN}/${MY_PN}_${PV}_Source.tar"
+
+LICENSE="ccp4"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND=">=virtual/jre-1.5
+ sci-chemistry/refmac
+ sci-libs/monomer-db"
+DEPEND=">=virtual/jdk-1.5"
+
+S="${WORKDIR}"/${MY_PN}
+
+EANT_EXTRA_ARGS="-Dfile.encoding=ISO-8859-1"
+
+src_install() {
+ java-pkg_dojar dist/${MY_PN}.jar
+ java-pkg_dolauncher ${PN} \
+ --main uk.ac.york.ysbl.JLigand \
+ --jar ${MY_PN}.jar \
+ --pkg_args "/usr/$(get_libdir)/${PN} ${CLIBD_MON} /usr/bin/libcheck /usr/bin/refmac"
+
+ insinto /usr/$(get_libdir)/${PN}
+ doins -r src/{images,resources} || die
+ fperms 775 /usr/$(get_libdir)/${PN}/resources/runLibcheck.csh || die
+ fperms 775 /usr/$(get_libdir)/${PN}/resources/runRefmac.csh || die
+}
+
diff --git a/sci-biology/ncbi-tools++/metadata.xml b/sci-chemistry/jligand/metadata.xml
index 3302123e5..efb490d78 100644
--- a/sci-biology/ncbi-tools++/metadata.xml
+++ b/sci-chemistry/jligand/metadata.xml
@@ -1,9 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+<herd>sci</herd>
+<maintainer>
+ <email>sci@gentoo.org</email>
+</maintainer>
</pkgmetadata>
diff --git a/sci-chemistry/tinker/ChangeLog b/sci-chemistry/tinker/ChangeLog
index f45afcb07..ab0c5cae7 100644
--- a/sci-chemistry/tinker/ChangeLog
+++ b/sci-chemistry/tinker/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.10 2008/11/06 23:53:23 dberkholz Exp $
+*tinker-5.0 (26 Jul 2009)
+
+ 26 Jul 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+ -tinker-4.2-r2.ebuild, +tinker-5.0.ebuild:
+ version bump
+
24 Apr 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
tinker-4.2-r2.ebuild:
~amd64 added see bug 263006
diff --git a/sci-chemistry/tinker/Manifest b/sci-chemistry/tinker/Manifest
index 558cb6b85..d1e0331d8 100644
--- a/sci-chemistry/tinker/Manifest
+++ b/sci-chemistry/tinker/Manifest
@@ -1,4 +1,4 @@
DIST tinker.tar.gz 8177555 RMD160 95f904f03f6a1767bbf73b00f326d19a164b7a1c SHA1 b42c5763958869894ee91fcd2ed4c5e03d8c1e5d SHA256 ad0cc9782dabdb0cce490fe26508761a36078e741f019090cbaa3e6cacf71055
-EBUILD tinker-4.2-r2.ebuild 1845 RMD160 f2f6aea11bd427d0d6a2e8ac55c99955c2973cb7 SHA1 defb9d66d120c1f3556a4223b64a32069c3fde40 SHA256 0af0b95c61c33ddb64de255911e78d88c7c4710e9825b43c61efb8d39a4f6cdb
-MISC ChangeLog 2225 RMD160 d9bd5aa28ebc0d496c2b24dde56a8d65e4b8f0ec SHA1 d7b97aa53272cac7ba4f06f8d9908e7d87178dd6 SHA256 07b64eeb84df091b330ed343329753e47067b6045a24ceeb1bc80d8a194524b8
+EBUILD tinker-5.0.ebuild 1845 RMD160 9099d5e35f26521a1daced4e2c420d749f51cb14 SHA1 aa2953ee8745008a6a999687b49603e09ca8904b SHA256 22c6bb14b4a9b2992ac690afea8b0f251aabd52a809bbb210d570c72ff999e97
+MISC ChangeLog 2370 RMD160 8b5d727c2720d348f6f00ff0846c505b71746e27 SHA1 f34a340ee01f2a597b8e17acc2f2da39c9d85dcb SHA256 5395df8360f6dd6700e0bc1c8957a5f42c663be966c6319c6e86e7f8bf1a88b0
MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
diff --git a/sci-chemistry/tinker/tinker-4.2-r2.ebuild b/sci-chemistry/tinker/tinker-5.0.ebuild
index 32ecab9b7..84f989021 100644
--- a/sci-chemistry/tinker/tinker-4.2-r2.ebuild
+++ b/sci-chemistry/tinker/tinker-5.0.ebuild
@@ -4,7 +4,7 @@
inherit fortran toolchain-funcs
-FORTRAN="g77 gfortran ifc"
+FORTRAN="gfortran ifc"
DESCRIPTION="Molecular modeling package that includes force fields, such as AMBER and CHARMM."
HOMEPAGE="http://dasher.wustl.edu/tinker/"
@@ -27,17 +27,17 @@ src_compile() {
if [[ ${FORTRANC} == "ifc" ]]; then
cp ../linux/intel/* .
else
- cp ../linux/gnu/* .
+ cp ../linux/gfortran/* .
fi
cp ../make/* .
# Prep build scripts
- sed -i -e "s:g77:${FORTRANC} ${LDFLAGS}:g" ${LINK}
+ sed -i -e "s:gfortran:${FORTRANC} ${LDFLAGS}:g" ${LINK}
# Default to -O2 if FFLAGS is unset
- sed -i -e "s:-O3 -ffast-math:${FFLAGS:- -O2}:" ${COMPILE}
- sed -i -e "s:g77:${FORTRANC}:g" ${COMPILE}
+ sed -i -e "s:-O:${FFLAGS:- -O2}:" ${COMPILE}
+ sed -i -e "s:gfortran:${FORTRANC}:g" ${COMPILE}
einfo "Compiling ..."
${COMPILE} || die "compile failed"
@@ -52,7 +52,7 @@ src_install() {
dodoc \
"${WORKDIR}"/tinker/doc/*.txt \
- "${WORKDIR}"/tinker/doc/release-4.2 \
+ "${WORKDIR}"/tinker/doc/release-${PV} \
"${WORKDIR}"/tinker/doc/*.pdf
dolib.a libtinker.a
diff --git a/sci-libs/balbes-db/ChangeLog b/sci-libs/balbes-db/ChangeLog
index 34208210d..b9df9cf00 100644
--- a/sci-libs/balbes-db/ChangeLog
+++ b/sci-libs/balbes-db/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*balbes-db-6.1.1-r3 (27 Jul 2009)
+
+ 27 Jul 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+ -balbes-db-6.1.1-r2.ebuild, +balbes-db-6.1.1-r3.ebuild:
+ We do not want db files to be executable
+
*balbes-db-6.1.1-r2 (02 Jul 2009)
02 Jul 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
diff --git a/sci-libs/balbes-db/Manifest b/sci-libs/balbes-db/Manifest
index 374470ee7..b78fd6522 100644
--- a/sci-libs/balbes-db/Manifest
+++ b/sci-libs/balbes-db/Manifest
@@ -1,4 +1,4 @@
DIST ccp4-6.1.1-balbesdb-10-11-08.tar.gz 600680516 RMD160 2fa444b1a290d1853d5ded605e1b343415e100fc SHA1 df0034becd821d5bd985dec34107ec30c282eb62 SHA256 099e8e690bcae8cb43b28ec9bf0250b1275b659c9e77f7ea7236e510370f203e
-EBUILD balbes-db-6.1.1-r2.ebuild 1015 RMD160 be2eafdedc0d74afabcb896964d80408c38d1160 SHA1 f6e11059ececcd8ff5c731644b00f481a52be852 SHA256 ef7cde080f4b60b6eb96b80e7afdd747acbac7740e28c25784e77adc6862565d
-MISC ChangeLog 781 RMD160 1325293a0e5581a483deeeb510232efd6cddb40a SHA1 9b24222212acfb0a30e15bd9c5f88359923c125e SHA256 0385097d02379f39a30bbd84b6d030e5f56c088fbb9c8662d6d073cfb87461d9
+EBUILD balbes-db-6.1.1-r3.ebuild 1132 RMD160 ba7e8a0d2de1711e8bbd6c069b0ac91623c75979 SHA1 3d1488b33f00dda0f373ddaa10e54b7a11610dca SHA256 5e5f3a34a6436fce0fb19b2a5f00cd00ce681a82a42d417643266c0f711978e9
+MISC ChangeLog 975 RMD160 f8d1e5dde8ddba7c52499c4c3fb91d27480da3e7 SHA1 8c2ea3a5c4d9d1985b8870e06bd12cc6c9392839 SHA256 8f9bf2af2555a2f447559f862392cfedd3198bb94791d000d20bd8a37c090ea6
MISC metadata.xml 215 RMD160 bc9c07aa91f2f175542244e4e4522a73558210a1 SHA1 facb283386de1c0b6b938cdcd4dde04d1694298b SHA256 13f32353652adbd3d934d41381cfc2cacc9e1127c508cebc73806cc1026ee80c
diff --git a/sci-libs/balbes-db/balbes-db-6.1.1-r2.ebuild b/sci-libs/balbes-db/balbes-db-6.1.1-r3.ebuild
index 81452a72a..70d01991f 100644
--- a/sci-libs/balbes-db/balbes-db-6.1.1-r2.ebuild
+++ b/sci-libs/balbes-db/balbes-db-6.1.1-r3.ebuild
@@ -32,5 +32,9 @@ src_install() {
# We don't want to wait around to copy all this, or suck up double
# the disk space
mv "${S}"/share/balbes/BALBES_0.0.1/* "${D}"/usr/share/balbes/BALBES_0.0.1/ || die
+ # db files should be executable
+ find "${D}"/usr/share/balbes/BALBES_0.0.1/ \
+ -type f \
+ -exec chmod 664 '{}' \;
dosym ../../../ccp4/data/monomers /usr/share/balbes/BALBES_0.0.1/dic
}