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-rw-r--r--sci-biology/MolBioLib/Manifest1
-rw-r--r--sci-biology/MolBioLib/MolBioLib-5.ebuild31
-rw-r--r--sci-biology/MolBioLib/metadata.xml12
3 files changed, 44 insertions, 0 deletions
diff --git a/sci-biology/MolBioLib/Manifest b/sci-biology/MolBioLib/Manifest
new file mode 100644
index 000000000..63714ecca
--- /dev/null
+++ b/sci-biology/MolBioLib/Manifest
@@ -0,0 +1 @@
+DIST MolBioLib_public.version5.tar.gz 2414384 SHA256 694a5682a09caea46dc531bb48a68817873633a31aa92177eb2ba0a253a38eb9 SHA512 056c38bcb65b845b32678fb8c5d758023154c07085414194e98e58281e61e475dca7321c8d684955c88bf459bc92c9d39f8b6091d0b804581e6f6e6ecabe3832 WHIRLPOOL 6d089274ed3f505eb887536b5a4d46e5bbb82951c27fbf684fb820605a6fb416a7e888c9d1a613cb29a3cf5a2b43a192a0781f56a769b793a8986097d2411e43
diff --git a/sci-biology/MolBioLib/MolBioLib-5.ebuild b/sci-biology/MolBioLib/MolBioLib-5.ebuild
new file mode 100644
index 000000000..5cb9ea210
--- /dev/null
+++ b/sci-biology/MolBioLib/MolBioLib-5.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="C++11 framework for rapid develop and deploy of bioinformatic tasks"
+HOMEPAGE="https://sourceforge.net/projects/molbiolib"
+SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.version${PV}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+# contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62) which contains jsoncpp
+# also needs app-doc/doxygen
+DEPEND="dev-lang/perl
+ sys-devel/gcc:*
+ sys-devel/clang
+ >=sci-biology/samtools-0.1.18:0
+ <sci-biology/samtools-1:0"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/MolBioLib
+
+src_compile(){
+ perl MakeAllApps.pl || die
+}
+
+# src_install() needs to be written
diff --git a/sci-biology/MolBioLib/metadata.xml b/sci-biology/MolBioLib/metadata.xml
new file mode 100644
index 000000000..f68a1b6fa
--- /dev/null
+++ b/sci-biology/MolBioLib/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer type="person">
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>sci-biology@gentoo.org</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>