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-rw-r--r--dev-java/hdf-java/ChangeLog6
-rw-r--r--dev-java/hdf-java/Manifest2
-rw-r--r--dev-java/hdf-java/files/hdf-java-2.7-shared.patch112
-rw-r--r--dev-java/hdf-java/files/hdf-java-2.8-shared.patch107
-rw-r--r--dev-java/hdf-java/hdf-java-2.7.ebuild85
-rw-r--r--dev-java/hdf-java/hdf-java-2.8.ebuild128
6 files changed, 5 insertions, 435 deletions
diff --git a/dev-java/hdf-java/ChangeLog b/dev-java/hdf-java/ChangeLog
index 960087910..f621d1d8c 100644
--- a/dev-java/hdf-java/ChangeLog
+++ b/dev-java/hdf-java/ChangeLog
@@ -2,6 +2,11 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 30 Nov 2012; S├ębastien Fabbro <bicatali@gentoo.org>
+ -files/hdf-java-2.7-shared.patch, -files/hdf-java-2.8-shared.patch,
+ -hdf-java-2.7.ebuild, -hdf-java-2.8.ebuild:
+ dev-java/hdf-java: cleaned for old version, buggy
+
*hdf-java-2.9 (25 Nov 2012)
25 Nov 2012; Andrew Savchenko <bircoph@gmail.com> +hdf-java-2.9.ebuild,
@@ -56,4 +61,3 @@
22 Jan 2010; S├ębastien Fabbro <bicatali@gentoo.org> +hdf-java-2.6.ebuild,
+files/hdf-java-2.6-shared.patch, +metadata.xml:
Initial import. Ebuild initially submitted by Guillaume Horel, bug #301049
-
diff --git a/dev-java/hdf-java/Manifest b/dev-java/hdf-java/Manifest
index e4d67d5d5..fc2d1e22a 100644
--- a/dev-java/hdf-java/Manifest
+++ b/dev-java/hdf-java/Manifest
@@ -1,3 +1 @@
-DIST hdf-java-2.7-src.tar 13209600 SHA256 091c999cf53266ba113bef45a83912b12444624cfe0253d5eb565b95e0832706 SHA512 895dcf69d02d41b2c8ae4ba2ab5dd30be21e320cb11e222deea6ac592374bdb22f3c0d5001fcda30b683dc3d9a59b16de1ead40179d3e211f5181b957a5134f1 WHIRLPOOL 3854db0df6e39b1b12814850bbc4dd6ea36daa7a4fcd4ef20dc11a42ce0b6663fea7f964424c6ff67bb78a901fda60f57570e051d21ca36e6b0686074065c198
-DIST hdf-java-2.8-src.tar 13670400 SHA256 bc1b1eb2b9e40c2a23aff295818526ba007cdf8d43bb9a3d1cb117304b56fbb5 SHA512 2109a1eb27bbd359b032e8a61fd4d0816b55e7f1ba403b37abdc81f180a920fb64285fef8062908b749e4f9572f2c44e3df684edc0bc4d9c6f81d9461ac399ba WHIRLPOOL 1b76bdabeb72b313eeb06f4839d67ba013948ac8a6f6907e4e6d02d3ae93bf5538b1f8d14673652c8a64d3c9cc10ff974e6036f6c8cf1591f433f5370025bba4
DIST hdf-java-2.9-src.tar 14161920 SHA256 6c7d362b808df3671ab3d600ac664e500b25158e693168ef6b35d100ebb048e3 SHA512 6ff9baa2264873411b05f8b6c190d9b72a25deb1e20c4b8633ba192bcf8700e03977e1ef9839e178a3856f3483468bdde432b753e8298e7e09c3a3b669b4c207 WHIRLPOOL 5b2545e2681e87afc1ca0373460c1209c4b94876efcd5b3310c5bf9ac23ac920821fe98d82301c3ec1520aa23561151b57755e66d527a0ff5b9e5e6a597cf590
diff --git a/dev-java/hdf-java/files/hdf-java-2.7-shared.patch b/dev-java/hdf-java/files/hdf-java-2.7-shared.patch
deleted file mode 100644
index 3b863a22e..000000000
--- a/dev-java/hdf-java/files/hdf-java-2.7-shared.patch
+++ /dev/null
@@ -1,112 +0,0 @@
-Respect LDFLAGS, properly use shared libraries
-
-http://bugs.gentoo.org/show_bug.cgi?id=301049
-
-Patch written by Guillaume Horel <guillaume.horel@gmail.com>
---- a/configure.in
-+++ b/configure.in
-@@ -177,7 +177,7 @@
- *)
- if test -n "$withval" ; then
- z_lib="`echo $withval |cut -f2 -d, -s`"
-- ZLIB=$z_lib"/libz."$LLEXT
-+ ZLIB="-L$z_lib -lz"
- HAVE_ZLIB="yes"
- else
- ZLIB=""
-@@ -211,7 +211,7 @@
- *)
- if test -n "$withval" ; then
- jpeg_lib="`echo $withval |cut -f2 -d, -s`"
-- JPEGLIB=$jpeg_lib"/libjpeg."$LLEXT
-+ JPEGLIB="-L$jpeg_lib -ljpeg"
- dnl AC_MSG_RESULT([jpeg found: $JPEGLIB]);
- HAVE_JPEG="yes"
- else
-@@ -246,7 +246,7 @@
- *)
- if test -n "$withval" ; then
- sz_lib="`echo $withval |cut -f2 -d, -s`"
-- SZLIB=$sz_lib"/libsz."$LLEXT
-+ SZLIB="-L$sz_lib -lsz"
- dnl AC_MSG_RESULT([szlib found: $SZLIB]);
- HAVE_SZIP="yes"
- else
-@@ -302,7 +302,7 @@
- ;;
- esac
- if test -n "$HDF4LIB"; then
-- LIBS="$HDF4LIB/libdf.$LLEXT $HDF4LIB/libmfhdf.$LLEXT $LIBS"
-+ LIBS="-L$HDF4LIB -ldf -lmhdf $LIBS"
- HAVE_HDF4="yes"
- fi
- AC_MSG_RESULT([$HAVE_HDF4])
-@@ -363,7 +363,7 @@
- *)
- if test -n "$withval" ; then
- hdf5_lib="`echo $withval |cut -f2 -d, -s`"
-- HDF5LIB=$hdf5_lib"/libhdf.$LLEXT"
-+ HDF5LIB="-L$hdf5_lib -lhdf"
- hdf5_inc="`echo $withval |cut -f1 -d,`"
- if test -n "$hdf5_inc"; then
- HDF5INC="$hdf5_inc"
-@@ -380,7 +380,7 @@
- ;;
- esac
- if test -n "$HDF5LIB"; then
-- LIBS="$HDF5LIB/libhdf5.$LLEXT $LIBS"
-+ LIBS="-L$HDF5LIB -lhdf5 $LIBS"
- HAVE_HDF5="yes"
- fi
- AC_MSG_RESULT([$HAVE_HDF5])
-@@ -628,10 +628,6 @@
- if test \( ! -d "$JH45INST" \); then
- JH45INST_FOUND=0
- fi
-- if test \( ! -w "$JH45INST" \); then
-- AC_MSG_ERROR( [ $JAVINST : not writable ])
-- JH45INST_FOUND=0
-- fi
- fi
- until test $JH45INST_FOUND -eq 1; do
- echo "Please type the directory in which to install the JH45"
---- a/native/hdf5lib/Makefile.in
-+++ b/native/hdf5lib/Makefile.in
-@@ -35,7 +35,7 @@
-
- CFLAGS = -D_FILE_OFFSET_BITS=64 $(DEFS) -I. -I$(HDF5INC) -I$(JAVAINC1) -I$(JAVAINC2)
-
--LIBS = $(HDF5LIB)/libhdf5.$(LLEXT) $(ZLIB) $(SZLIB) -lm
-+LIBS = -L$(HDF5LIB) -lhdf5 $(ZLIB) $(SZLIB) -lm
-
- # Macro def: object filename used
- OBJECTS = exceptionImp.o h5Constants.o h5Imp.o h5aImp.o h5dImp.o h5eImp.o h5fImp.o h5gImp.o h5iImp.o h5lImp.o h5oImp.o h5pImp.o h5rImp.o h5sImp.o h5tImp.o nativeData.o h5util.o h5zImp.o
-@@ -47,7 +47,7 @@
-
- libjhdf5: $(OBJECTS)
- -mkdir -p $(LIBDIR);
-- $(LD) $(LDOPT) -o $(LIBDIR)/libjhdf5.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS)
-+ $(LD) $(LDOPT) $(LDFLAGS) -o $(LIBDIR)/libjhdf5.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS)
-
- clean:
- $(RM) -f *.o so_locations $(LIBDIR)/libjhdf5.$(JSLEXT)
---- a/native/hdflib/Makefile.in
-+++ b/native/hdflib/Makefile.in
-@@ -41,7 +41,7 @@
- CFLAGS = $(DEFS) -I. -I$(JAVAINC1) -I$(JAVAINC2) -I$(HDFINC)
-
- # Be sure to add -lbsd if compiling in a SYSV environment
--LIBS = $(HDFLIB)/libmfhdf.$(LLEXT) $(HDFLIB)/libdf.$(LLEXT) $(SZLIB) $(ZLIB) $(JPEGLIB) -lm
-+LIBS = -L$(HDFLIB) -lmfhdf -ldf $(SZLIB) $(ZLIB) $(JPEGLIB) -lm
-
- # Macro def: object filename used
- OBJECTS = hdfstructsutil.o \
-@@ -60,7 +60,7 @@
-
- libjhdf: $(OBJECTS)
- -mkdir -p $(LIBDIR);
-- $(LD) $(LDOPT) -o $(LIBDIR)/libjhdf.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS)
-+ $(LD) $(LDOPT) $(LDFLAGS) -o $(LIBDIR)/libjhdf.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS)
-
- clean:
- $(RM) -f *.o so_locations $(LIBDIR)/libjhdf.$(JSLEXT)
diff --git a/dev-java/hdf-java/files/hdf-java-2.8-shared.patch b/dev-java/hdf-java/files/hdf-java-2.8-shared.patch
deleted file mode 100644
index 2375fb580..000000000
--- a/dev-java/hdf-java/files/hdf-java-2.8-shared.patch
+++ /dev/null
@@ -1,107 +0,0 @@
---- a/configure.in.orig 2011-11-29 20:19:58.000000000 +0000
-+++ b/configure.in 2012-04-14 22:06:05.000000000 +0100
-@@ -177,7 +177,7 @@
- *)
- if test -n "$withval" ; then
- z_lib="`echo $withval |cut -f2 -d, -s`"
-- ZLIB=$z_lib"/libz."$LLEXT
-+ ZLIB="-L$z_lib -lz"
- HAVE_ZLIB="yes"
- else
- ZLIB=""
-@@ -211,7 +211,7 @@
- *)
- if test -n "$withval" ; then
- jpeg_lib="`echo $withval |cut -f2 -d, -s`"
-- JPEGLIB=$jpeg_lib"/libjpeg."$LLEXT
-+ JPEGLIB="-L$jpeg_lib -ljpeg"
- dnl AC_MSG_RESULT([jpeg found: $JPEGLIB]);
- HAVE_JPEG="yes"
- else
-@@ -246,7 +246,7 @@
- *)
- if test -n "$withval" ; then
- sz_lib="`echo $withval |cut -f2 -d, -s`"
-- SZLIB=$sz_lib"/libszip."$LLEXT
-+ SZLIB="-L$sz_lib -lsz"
- dnl AC_MSG_RESULT([szlib found: $SZLIB]);
- HAVE_SZIP="yes"
- else
-@@ -302,7 +302,7 @@
- ;;
- esac
- if test -n "$HDF4LIB"; then
-- LIBS="$HDF4LIB/libdf.$LLEXT $HDF4LIB/libmfhdf.$LLEXT $LIBS"
-+ LIBS="-L$HDF4LIB -ldf -lmfhdf $LIBS"
- HAVE_HDF4="yes"
- fi
- AC_MSG_RESULT([$HAVE_HDF4])
-@@ -363,7 +363,7 @@
- *)
- if test -n "$withval" ; then
- hdf5_lib="`echo $withval |cut -f2 -d, -s`"
-- HDF5LIB=$hdf5_lib"/libhdf.$LLEXT"
-+ HDF5LIB="-L$hdf5_lib -lhdf"
- hdf5_inc="`echo $withval |cut -f1 -d,`"
- if test -n "$hdf5_inc"; then
- HDF5INC="$hdf5_inc"
-@@ -380,7 +380,7 @@
- ;;
- esac
- if test -n "$HDF5LIB"; then
-- LIBS="$HDF5LIB/libhdf5.$LLEXT $LIBS"
-+ LIBS="-L$HDF5LIB -lhdf5 $LIBS"
- HAVE_HDF5="yes"
- fi
- AC_MSG_RESULT([$HAVE_HDF5])
-@@ -637,10 +637,6 @@
- if test \( ! -d "$JH45INST" \); then
- JH45INST_FOUND=0
- fi
-- if test \( ! -w "$JH45INST" \); then
-- AC_MSG_ERROR( [ $JAVINST : not writable ])
-- JH45INST_FOUND=0
-- fi
- fi
- until test $JH45INST_FOUND -eq 1; do
- echo "Please type the directory in which to install the JH45"
---- a/native/hdf5lib/Makefile.in
-+++ b/native/hdf5lib/Makefile.in
-@@ -35,7 +35,7 @@
-
- CFLAGS = -D_FILE_OFFSET_BITS=64 $(DEFS) -I. -I$(HDF5INC) -I$(JAVAINC1) -I$(JAVAINC2)
-
--LIBS = $(HDF5LIB)/libhdf5.$(LLEXT) $(ZLIB) $(SZLIB) -lm
-+LIBS = -L$(HDF5LIB) -lhdf5 $(ZLIB) $(SZLIB) -lm
-
- # Macro def: object filename used
- OBJECTS = exceptionImp.o h5Constants.o h5Imp.o h5aImp.o h5dImp.o h5eImp.o h5fImp.o h5gImp.o h5iImp.o h5lImp.o h5oImp.o h5pImp.o h5rImp.o h5sImp.o h5tImp.o nativeData.o h5util.o h5zImp.o
-@@ -47,7 +47,7 @@
-
- libjhdf5: $(OBJECTS)
- -mkdir -p $(LIBDIR);
-- $(LD) $(LDOPT) -o $(LIBDIR)/libjhdf5.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS)
-+ $(LD) $(LDOPT) $(LDFLAGS) -o $(LIBDIR)/libjhdf5.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS)
-
- clean:
- $(RM) -f *.o so_locations $(LIBDIR)/libjhdf5.$(JSLEXT)
---- a/native/hdflib/Makefile.in
-+++ b/native/hdflib/Makefile.in
-@@ -41,7 +41,7 @@
- CFLAGS = $(DEFS) -I. -I$(JAVAINC1) -I$(JAVAINC2) -I$(HDFINC)
-
- # Be sure to add -lbsd if compiling in a SYSV environment
--LIBS = $(HDFLIB)/libmfhdf.$(LLEXT) $(HDFLIB)/libdf.$(LLEXT) $(SZLIB) $(ZLIB) $(JPEGLIB) -lm
-+LIBS = -L$(HDFLIB) -lmfhdf -ldf $(SZLIB) $(ZLIB) $(JPEGLIB) -lm
-
- # Macro def: object filename used
- OBJECTS = hdfstructsutil.o \
-@@ -60,7 +60,7 @@
-
- libjhdf: $(OBJECTS)
- -mkdir -p $(LIBDIR);
-- $(LD) $(LDOPT) -o $(LIBDIR)/libjhdf.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS)
-+ $(LD) $(LDOPT) $(LDFLAGS) -o $(LIBDIR)/libjhdf.$(JSLEXT) $(LDOPT2) $(OBJECTS) $(LIBS)
-
- clean:
- $(RM) -f *.o so_locations $(LIBDIR)/libjhdf.$(JSLEXT)
diff --git a/dev-java/hdf-java/hdf-java-2.7.ebuild b/dev-java/hdf-java/hdf-java-2.7.ebuild
deleted file mode 100644
index 7f31dd793..000000000
--- a/dev-java/hdf-java/hdf-java-2.7.ebuild
+++ /dev/null
@@ -1,85 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=2
-JAVA_PKG_IUSE="doc examples"
-inherit eutils java-pkg-2 autotools
-
-DESCRIPTION="Java interface to the HDF5 library"
-HOMEPAGE="http://www.hdfgroup.org/hdf-java-html/index.html"
-SRC_URI="http://www.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/HDF-JAVA-${PV}/src/${P}-src.tar"
-
-LICENSE="NCSA-HDF"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="hdf szip zlib test"
-
-CDEPEND=">=sci-libs/hdf5-1.8[szip=,zlib=]
- hdf? (
- sci-libs/hdf
- virtual/jpeg
- )"
-
-RDEPEND="${CDEPEND}
- >=virtual/jre-1.5"
-
-DEPEND=">=virtual/jdk-1.5
- ${CDEPEND}"
-
-S=${WORKDIR}/${PN}
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-shared.patch
- eautoreconf
- rm lib/*.jar
-}
-
-src_configure() {
- local stdpath="/usr/include,/usr/$(get_libdir)"
- local myconf="--with-hdf4=no --with-libjpeg=no"
- use hdf && \
- myconf="--with-libjpeg=${stdpath} --with-hdf4=${stdpath}"
- use zlib && myconf="${myconf} --with-libz=${stdpath}"
- use szip && myconf="${myconf} --with-libsz=${stdpath}"
-
- econf \
- ${myconf} \
- --with-hdf5="${stdpath}" \
- --with-jdk="$(java-config -o)/include,$(java-config -o)/jre/lib"
-}
-
-src_compile() {
- # parallel needs work. anyone?
- emake -j1 just-hdf5 || die
-
- if use hdf; then
- sed -i "s/MAX_VAR_DIMS/H4_MAX_VAR_DIMS/" \
- native/hdflib/hdfstructsutil.c || die
- sed -i "s/MAX_NC_NAME/H4_MAX_NC_NAME/" \
- native/hdflib/hdfvdataImp.c || die
- sed -i "s/MAX_NC_NAME/H4_MAX_NC_NAME/" \
- native/hdflib/hdfsdsImp.c || die
- emake -j1 just-hdf4|| die
- fi
-
- if use examples; then
- emake -j1 do-examples || die
- fi
-
- if use doc; then
- emake -j1 javadocs || die
- fi
-}
-
-src_install() {
- java-pkg_dojar "lib/jhdf5.jar"
- java-pkg_doso "lib/linux/libjhdf5.so"
-
- if use hdf; then
- java-pkg_dojar "lib/jhdf.jar"
- java-pkg_doso "lib/linux/libjhdf.so"
- fi
- use doc && java-pkg_dojavadoc "docs/javadocs"
- use examples && java-pkg_doexamples "examples"
-}
diff --git a/dev-java/hdf-java/hdf-java-2.8.ebuild b/dev-java/hdf-java/hdf-java-2.8.ebuild
deleted file mode 100644
index 98c9248f2..000000000
--- a/dev-java/hdf-java/hdf-java-2.8.ebuild
+++ /dev/null
@@ -1,128 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=4
-JAVA_PKG_IUSE="doc examples"
-inherit eutils java-pkg-2 autotools fdo-mime
-
-DESCRIPTION="Java interface to the HDF5 library"
-HOMEPAGE="http://www.hdfgroup.org/hdf-java-html/index.html"
-SRC_URI="http://www.hdfgroup.org/ftp/HDF5/hdf-java/src/${P}-src.tar"
-
-LICENSE="NCSA-HDF"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="hdf hdfview szip test zlib"
-
-CDEPEND=">=sci-libs/hdf5-1.8[szip=,zlib=]
- hdf? ( sci-libs/hdf virtual/jpeg )
- hdfview? ( dev-java/fits dev-java/netcdf )"
-
-RDEPEND="${CDEPEND}
- >=virtual/jre-1.5"
-
-DEPEND="${CDEPEND}
- >=virtual/jdk-1.5
- test? ( >=dev-java/junit-4 )"
-
-REQUIRED_USE="hdfview? ( hdf )"
-
-# buggy test with incompatible hdf5 library versions
-RESTRICT="test"
-
-S="${WORKDIR}/${PN}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-shared.patch
- eautoreconf
- rm lib/*.jar
- if use hdfview; then
- java-pkg_jar-from --into lib fits fits.jar
- java-pkg_jar-from --into lib netcdf netcdf.jar
- fi
- use test && java-pkg_jar-from --into lib junit-4 junit.jar
-}
-
-src_configure() {
- local stdpath="${EPREFIX}/usr/include,${EPREFIX}/usr/$(get_libdir)"
- local myconf="--with-hdf4=no --with-libjpeg=no"
- use hdf && \
- myconf="--with-libjpeg=${stdpath} --with-hdf4=${stdpath}"
- use zlib && myconf="${myconf} --with-libz=${stdpath}"
- use szip && myconf="${myconf} --with-libsz=${stdpath}"
-
- econf \
- ${myconf} \
- --with-hdf5="${stdpath}" \
- --with-jdk="$(java-config -o)/include,$(java-config -o)/jre/lib"
-}
-
-src_compile() {
- # gentoo bug #302621
- has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc
-
- # parallel needs work. anyone?
- emake -j1 ncsa just-hdf5
-
- if use hdf; then
- sed -i \
- -e "s/MAX_VAR_DIMS/H4_MAX_VAR_DIMS/" \
- native/hdflib/hdfstructsutil.c || die
- sed -i \
- -e "s/MAX_NC_NAME/H4_MAX_NC_NAME/" \
- native/hdflib/hdf{vdata,sds}Imp.c || die
- emake -j1 just-hdf4
- fi
-
- use hdfview && emake -j1 packages
- use examples && emake -j1 do-examples
- use doc && emake -j1 javadocs
-}
-
-src_test() {
- emake -j1 check
-}
-
-src_install() {
- java-pkg_dojar lib/jhdf5.jar
- java-pkg_doso lib/linux/libjhdf5.so
-
- if use hdf; then
- java-pkg_dojar lib/jhdf.jar
- java-pkg_doso lib/linux/libjhdf.so
- fi
-
- if use hdfview; then
- java-pkg_dojar lib/jhdf5obj.jar
- java-pkg_dojar lib/jhdfobj.jar
- java-pkg_dojar lib/ext/nc2obj.jar
- java-pkg_dojar lib/ext/fitsobj.jar
- java-pkg_dojar lib/jhdfview.jar
- cat <<-EOF > hdfview
- #!/bin/sh
- export CLASSPATH=\$(java-config --classpath hdf-java)
- \$(java-config --java) \
- -Xmx1000m \
- -Djava.library.path=\$(java-config --library hdf-java) \
- ncsa.hdf.view.HDFView \
- -root "${EROOT}" \$*
- EOF
- dobin hdfview
- insinto /usr/share/mime/packages
- doins "${FILESDIR}"/hdfview.xml
- newicon ncsa/hdf/view/icons/hdf_large.gif hdfview.gif
- make_desktop_entry hdfview "HDF Viewer" hdfview
- fi
-
- use doc && java-pkg_dojavadoc docs/javadocs
- use examples && java-pkg_doexamples examples
-}
-
-pkg_postinst() {
- use hdfview && fdo-mime_desktop_database_update
-}
-
-pkg_postrm() {
- use hdfview && fdo-mime_desktop_database_update
-}