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Diffstat (limited to 'sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild')
-rw-r--r--sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild57
1 files changed, 0 insertions, 57 deletions
diff --git a/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild b/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild
deleted file mode 100644
index 38a3d703e..000000000
--- a/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="Assembler to combine Sanger, Roche 454 and Illumina Solexa reads"
-HOMEPAGE="http://www.genome.umd.edu/masurca.html"
-SRC_URI="ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA-"${PV}".tar.gz
- ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA_QuickStartGuide.pdf"
-
-LICENSE="BSD GPL-2 GPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="dev-lang/perl
- app-arch/bzip2"
-RDEPEND="${DEPEND}
- >=sci-biology/quorum-0.2.1
- >=sci-biology/jellyfish-1.1.11"
-
-# the ebuild mimics "${S}"/install.sh
-src_configure(){
- cd jellyfish || die
- econf
-
- cd ../CA/kmer || die
- econf
-
- cd ../../SuperReads || die
- econf
-
- cd ../quorum || die
- econf --enable-relative-paths --with-relative-jf-path
-}
-
-src_compile(){
- cd jellyfish || die
- default
-
- cd ../CA/kmer || die
- default
-
- cd ../../CA/src || die
- default
-
- cd ../SuperReads || die
- default
-
- cd ../quorum || die
- default
-}
-
-src_install(){
- dobin masurca
- dodoc sr_config_example.txt
-}