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Diffstat (limited to 'sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild')
-rw-r--r-- | sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild | 57 |
1 files changed, 0 insertions, 57 deletions
diff --git a/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild b/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild deleted file mode 100644 index 38a3d703e..000000000 --- a/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Assembler to combine Sanger, Roche 454 and Illumina Solexa reads" -HOMEPAGE="http://www.genome.umd.edu/masurca.html" -SRC_URI="ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA-"${PV}".tar.gz - ftp://ftp.genome.umd.edu/pub/MaSuRCA/MaSuRCA_QuickStartGuide.pdf" - -LICENSE="BSD GPL-2 GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="dev-lang/perl - app-arch/bzip2" -RDEPEND="${DEPEND} - >=sci-biology/quorum-0.2.1 - >=sci-biology/jellyfish-1.1.11" - -# the ebuild mimics "${S}"/install.sh -src_configure(){ - cd jellyfish || die - econf - - cd ../CA/kmer || die - econf - - cd ../../SuperReads || die - econf - - cd ../quorum || die - econf --enable-relative-paths --with-relative-jf-path -} - -src_compile(){ - cd jellyfish || die - default - - cd ../CA/kmer || die - default - - cd ../../CA/src || die - default - - cd ../SuperReads || die - default - - cd ../quorum || die - default -} - -src_install(){ - dobin masurca - dodoc sr_config_example.txt -} |