aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
Diffstat (limited to 'sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild')
-rw-r--r--sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild73
1 files changed, 0 insertions, 73 deletions
diff --git a/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild b/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
deleted file mode 100644
index 3af0ec3b3..000000000
--- a/sci-biology/OBO-Edit/OBO-Edit-2.3.1.ebuild
+++ /dev/null
@@ -1,73 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit toolchain-funcs java-pkg-2
-
-MY_PV="${PV//./_}"
-
-DESCRIPTION="Java-based editor optimized for the OBO biological ontology file format"
-HOMEPAGE="http://www.oboedit.org/" # no https, invalid certificate
-SRC_URI="https://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%20${PV}/oboedit_${MY_PV}_unix_install4j.sh -> ${PN}_unix_install4j-${PV}.sh"
-
-LICENSE="OBO-Edit" # Artistic-like
-SLOT="0"
-KEYWORDS=""
-
-DEPEND="app-arch/rpm2targz"
-RDEPEND="virtual/jre"
-
-S="${WORKDIR}"
-
-pkg_setup() {
- einfo "Fixing java access violations ..."
- # learned from bug #387227
- # opened a bug #402507 to get this .systemPrefs directory pre-created for everybody
- addpredict /opt/icedtea-bin-7.2.0/jre/.systemPrefs
- addpredict /usr/local/bin/OBO-Edit
-}
-
-src_prepare(){
- default
- dodir /opt/OBO-Edit2/.install4j /usr/bin
- cp "${DISTDIR}"/"${PN}"_unix_install4j-"${PV}".sh "${WORKDIR}" || die
-
- # /var/tmp/portage/sci-biology/OBO-Edit-2.1.1.6/image//opt/OBO-Edit2/.install4j/response.varfile
- sed -e "s#\"\${D}\"#"${D}"#g" "${FILESDIR}"/response.varfile | \
- sed -e "s#\"\${HOME}\"#"${HOME}"#g" | \
- sed -e "s@sys.symlinkDir=/usr/local/bin@#sys.symlinkDir=/usr/local/bin@" \
- > "${D}"/opt/OBO-Edit2/.install4j/response.varfile || die "sed failed"
- cp -r "${D}"/opt/OBO-Edit2/.install4j "${HOME}" || die
-
- # for user root install4j writes into /opt/icedtea-bin-7.2.0/jre/.systemPrefs or whatever it
- # found via JAVA_HOME or similar variables
- # for other users it writes into $HOME/.java/.userPrefs/
-
- # trick setting -Djava.util.prefs.systemRoot="${TMPDIR}" does not work
- sed \
- -e "s@/bin/java\" -Dinstall4j.jvmDir=\"\$app_java_home\"@/bin/java\" -Duser.home="${HOME}" -Dinstall4j.jvmDir="${HOME}" -Dsys.symlinkDir="${D}"/usr/bin -Djava.util.prefs.systemRoot="${HOME}"@" \
- -i "${WORKDIR}"/"${PN}"_unix_install4j-"${PV}".sh \
- || die "failed to set userHome and jvmDir where JAVA .systemPrefs can be found"
-
- chmod u+rx "${WORKDIR}/${PN}"_unix_install4j-"${PV}".sh || die
-}
-
-src_install(){
- # it looks install4j removes the target installation direcotry before writing into it :((
- #
- # cat "${TMPDIR}"/.install4j/response.varfile
- # chmod a-w "${TMPDIR}"/.install4j/response.varfile
-
- INSTALL4J_KEEP_TEMP="yes" \
- sh "${WORKDIR}"/"${PN}"_unix_install4j-"${PV}".sh -q \
- --varfile="${HOME}"/.install4j/response.varfile \
- --destination="${D}"/opt/OBO-Edit2 \
- -dir "${D}"/opt/OBO-Edit2 \
- || die "Failed to run the self-extracting ${WORKDIR}/${PN}_unix_install4j-${PV}.sh file"
-
- find . -name firstrun -delete || die
-
- echo "PATH=/opt/OBO-Edit2" > 99OBO-Edit || die
- doenvd 99OBO-Edit
-}