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Diffstat (limited to 'sci-biology/arachne/arachne-46233.ebuild')
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+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+DESCRIPTION="Whole genome shotgun assembler for Sanger read lengths (overlap-layout-contig)"
+HOMEPAGE="https://www.broadinstitute.org/crd/wiki
+ http://genome.cshlp.org/content/12/1/177.abstract"
+SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ARACHNE/latest_source_code/${P}.tar.gz"
+
+LICENSE="MIT" # not exactly MIT ... hence no KEYWORDS
+SLOT="0"
+KEYWORDS=""
+IUSE="doc openmp"
+
+DEPEND="dev-libs/xerces-c
+ doc? ( virtual/latex-base app-text/dvipsk )"
+RDEPEND="${DEPEND}"
+
+# needs >=g++-4.7 but does not compile with 5.3.0
+
+# --disable-openmp to disable requirement for OpenMP-capable compiler
+src_configure() {
+ local myconf=()
+ use openmp || myconf+=( --disable-openmp )
+ econf ${myconf[@]}
+}
+
+# set the following environment variables
+# http://www.broadinstitute.org/crd/wiki/index.php/Setup
+#
+# ARACHNE_PRE
+# ARACHNE_BIN_DIR
+# ARACHNE_PRETTY_HELP
+
+pkg_postinst(){
+ einfo "Please add these to your ~/.bashrc"
+ einfo "limit stacksize 100000"
+ einfo "limit datasize unlimited"
+}