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Diffstat (limited to 'sci-biology/conrad/conrad-1.ebuild')
-rw-r--r-- | sci-biology/conrad/conrad-1.ebuild | 52 |
1 files changed, 0 insertions, 52 deletions
diff --git a/sci-biology/conrad/conrad-1.ebuild b/sci-biology/conrad/conrad-1.ebuild deleted file mode 100644 index bca495174..000000000 --- a/sci-biology/conrad/conrad-1.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="Ab initio- and ad hoc evidence-based (RNA-Seq, BLAST) gene/ORF predictor" -HOMEPAGE="https://sourceforge.net/projects/conradcrf" -SRC_URI="https://downloads.sourceforge.net/project/conradcrf/conradcrf/Version%201/conradSrc.zip -> ${P}.zip" - -LICENSE="LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=" - >=virtual/jre-1.5:* - <virtual/jdk-1.9:* - dev-java/commons-logging - >=dev-java/commons-lang-2.1:* - dev-java/colt - dev-java/dom4j - " - # spring # see bug #97004 - # dev-java/LBFGS # LBFGS is a numericla library we use internally for the solver -DEPEND="${RDEPEND} - >=virtual/jdk-1.5:* - <virtual/jdk-1.9:* - dev-java/ant-core - >=dev-java/jfreechart-1.0.3 - >=dev-java/jcommon-1.0.6 - >=dev-java/commons-math-1.1 - " -BDEPEND="app-arch/unzip" -S="${WORKDIR}" - -src_prepare(){ - default - sed -e s'#lib/conrad.jar#/usr/share/conrad/lib/conrad.jar#' -i bin/conrad.sh || die -} - -src_compile(){ - cd dev || die - ant compile || die -} - -src_install() { - dobin bin/conrad.sh - java-pkg_dojar lib/conrad.jar - java-pkg_dolauncher conrad --jar conrad.jar - dodoc -r docs models samples trainingFiles -} |