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Diffstat (limited to 'sci-biology/conrad/conrad-1.ebuild')
-rw-r--r--sci-biology/conrad/conrad-1.ebuild52
1 files changed, 0 insertions, 52 deletions
diff --git a/sci-biology/conrad/conrad-1.ebuild b/sci-biology/conrad/conrad-1.ebuild
deleted file mode 100644
index bca495174..000000000
--- a/sci-biology/conrad/conrad-1.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit java-pkg-2 java-ant-2
-
-DESCRIPTION="Ab initio- and ad hoc evidence-based (RNA-Seq, BLAST) gene/ORF predictor"
-HOMEPAGE="https://sourceforge.net/projects/conradcrf"
-SRC_URI="https://downloads.sourceforge.net/project/conradcrf/conradcrf/Version%201/conradSrc.zip -> ${P}.zip"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64"
-
-RDEPEND="
- >=virtual/jre-1.5:*
- <virtual/jdk-1.9:*
- dev-java/commons-logging
- >=dev-java/commons-lang-2.1:*
- dev-java/colt
- dev-java/dom4j
- "
- # spring # see bug #97004
- # dev-java/LBFGS # LBFGS is a numericla library we use internally for the solver
-DEPEND="${RDEPEND}
- >=virtual/jdk-1.5:*
- <virtual/jdk-1.9:*
- dev-java/ant-core
- >=dev-java/jfreechart-1.0.3
- >=dev-java/jcommon-1.0.6
- >=dev-java/commons-math-1.1
- "
-BDEPEND="app-arch/unzip"
-S="${WORKDIR}"
-
-src_prepare(){
- default
- sed -e s'#lib/conrad.jar#/usr/share/conrad/lib/conrad.jar#' -i bin/conrad.sh || die
-}
-
-src_compile(){
- cd dev || die
- ant compile || die
-}
-
-src_install() {
- dobin bin/conrad.sh
- java-pkg_dojar lib/conrad.jar
- java-pkg_dolauncher conrad --jar conrad.jar
- dodoc -r docs models samples trainingFiles
-}