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Diffstat (limited to 'sci-biology/ensembl-tools/ensembl-tools-85.ebuild')
| -rw-r--r-- | sci-biology/ensembl-tools/ensembl-tools-85.ebuild | 47 |
1 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/ensembl-tools/ensembl-tools-85.ebuild b/sci-biology/ensembl-tools/ensembl-tools-85.ebuild new file mode 100644 index 000000000..642caf8eb --- /dev/null +++ b/sci-biology/ensembl-tools/ensembl-tools-85.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PERL_EXPORT_PHASE_FUNCTIONS=no +inherit perl-module + +DESCRIPTION="Bioinformatics tools incl. Variant Effect Predictor (VEP)" +HOMEPAGE="http://grch37.ensembl.org/info/docs/tools/vep/script/index.html" +SRC_URI="https://github.com/Ensembl/ensembl-tools/archive/release/${PV}.zip -> ${P}.zip" + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="" # BUG: needs Bio::EnsEMBL::Registry +IUSE="" + +DEPEND="" +#DEPEND="dev-perl/Perl-XS +# dev-perl/Bio-DB-HTS" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/ensembl-tools-release-${PV}" + +src_install(){ + perl_set_version + insinto ${VENDOR_LIB}/${PN} + cd scripts/variant_effect_predictor || die + perl INSTALL.pl --DESTDIR="${EPREFIX}"/"${DESTDIR}" --AUTO ac + newdoc README.txt variant_effect_predictor.txt + cd ../../scripts/region_reporter || die + dobin *.pl + newdoc README.txt region_reporter.txt + cd ../../scripts/assembly_converter + dobin *.pl + insinto ${VENDOR_LIB}/${PN} + doins *.pm + newdoc README.txt assembly_converter.txt + insinto /usr/share/"${PN}"/examples + doins assemblymapper.in + cd ../../scripts/id_history_converter + dobin *.pl + newdoc README.txt id_history_converter.txt + insinto /usr/share/"${PN}"/examples + doins idmapper.in +} |