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Diffstat (limited to 'sci-biology/fastqc/fastqc-0.11.2.ebuild')
-rw-r--r-- | sci-biology/fastqc/fastqc-0.11.2.ebuild | 37 |
1 files changed, 0 insertions, 37 deletions
diff --git a/sci-biology/fastqc/fastqc-0.11.2.ebuild b/sci-biology/fastqc/fastqc-0.11.2.ebuild deleted file mode 100644 index dadc2881d..000000000 --- a/sci-biology/fastqc/fastqc-0.11.2.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=5 - -inherit java-pkg-2 eutils java-ant-2 - -DESCRIPTION="Perl-based wrapper around java apps to quality control FASTA/FASTQ sequence files" -HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/" -SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v"${PV}"_source.zip" - -LICENSE="GPL-3+" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="sci-biology/picard - >=virtual/jre-1.5:*" -RDEPEND="${DEPEND} - >=virtual/jdk-1.5:* - dev-java/ant-core" - -S="${WORKDIR}"/FastQC - -src_prepare(){ - cp "${FILESDIR}"/build.xml . || die -} - -src_install(){ - dobin fastqc run_fastqc.bat - dodoc README.txt RELEASE_NOTES.txt - - # TODO: need to compile java in uk/ac/babraham/FastQC/ - # and decide whether jbzip2-0.9.jar is a standard java lib or not - # ignore the sam-1.32.jar, that is likely library already in sci-biology/picard -} |