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Diffstat (limited to 'sci-biology/fastqc/fastqc-0.11.2.ebuild')
-rw-r--r--sci-biology/fastqc/fastqc-0.11.2.ebuild37
1 files changed, 0 insertions, 37 deletions
diff --git a/sci-biology/fastqc/fastqc-0.11.2.ebuild b/sci-biology/fastqc/fastqc-0.11.2.ebuild
deleted file mode 100644
index dadc2881d..000000000
--- a/sci-biology/fastqc/fastqc-0.11.2.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-inherit java-pkg-2 eutils java-ant-2
-
-DESCRIPTION="Perl-based wrapper around java apps to quality control FASTA/FASTQ sequence files"
-HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
-SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v"${PV}"_source.zip"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="sci-biology/picard
- >=virtual/jre-1.5:*"
-RDEPEND="${DEPEND}
- >=virtual/jdk-1.5:*
- dev-java/ant-core"
-
-S="${WORKDIR}"/FastQC
-
-src_prepare(){
- cp "${FILESDIR}"/build.xml . || die
-}
-
-src_install(){
- dobin fastqc run_fastqc.bat
- dodoc README.txt RELEASE_NOTES.txt
-
- # TODO: need to compile java in uk/ac/babraham/FastQC/
- # and decide whether jbzip2-0.9.jar is a standard java lib or not
- # ignore the sam-1.32.jar, that is likely library already in sci-biology/picard
-}