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Diffstat (limited to 'sci-biology/gbrowse/gbrowse-2.00.ebuild')
-rw-r--r--sci-biology/gbrowse/gbrowse-2.00.ebuild76
1 files changed, 0 insertions, 76 deletions
diff --git a/sci-biology/gbrowse/gbrowse-2.00.ebuild b/sci-biology/gbrowse/gbrowse-2.00.ebuild
deleted file mode 100644
index cce42a39b..000000000
--- a/sci-biology/gbrowse/gbrowse-2.00.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild,v 1.9 2007/07/29 17:07:38 phreak Exp $
-
-EAPI="2"
-
-inherit perl-module webapp
-
-MY_P="GBrowse-${PV}"
-
-DESCRIPTION="The generic genome browser provides a display of genomic annotations on interactive web pages"
-HOMEPAGE="http://gmod.org"
-SRC_URI="mirror://sourceforge/gmod/${MY_P}.tar.gz"
-
-LICENSE="Artistic"
-# webapp ebuilds do not set SLOT
-KEYWORDS="~x86 ~amd64"
-IUSE="-minimal" # lwp moby scf
-
-S="${WORKDIR}/${MY_P}"
-
-# TODO: dev-perl/MOBY, dev-perl/Bio-SCF, dev-perl/Safe-World (not compatible w/perl-5.10)
-DEPEND=">=dev-lang/perl-5.8.8
- >=sci-biology/bioperl-1.6
- >=dev-perl/GD-2.07
- dev-perl/IO-String
- virtual/perl-Digest-MD5
- >=dev-perl/CGI-Session-4.03
- dev-perl/Statistics-Descriptive
- >=dev-perl/Bio-Graphics-1.97
- dev-perl/JSON
- dev-perl/libwww-perl"
-RDEPEND="${DEPEND}
- >=www-servers/apache-2.0.47
- dev-perl/DBI
- || ( dev-perl/DBD-Pg dev-perl/DBD-mysql )
- !minimal? (
- dev-perl/File-NFSLock
- dev-perl/FCGI
- perl-core/Math-BigInt
- dev-perl/Digest-SHA1
- dev-perl/Crypt-SSLeay
- dev-perl/Net-SMTP-SSL
- dev-perl/GD-SVG
- dev-perl/Net-OpenID-Consumer
- virtual/perl-DB_File
- dev-perl/DB_File-Lock
- )"
-
-src_prepare() {
- sed -i 's/return unless -t STDIN/return/' install_util/GBrowseInstall.pm || die
-}
-
-src_configure() {
- webapp_src_preinst
- perl Makefile.PL \
- HTDOCS="${D}/${MY_HTDOCSDIR}" \
- CGIBIN="${D}/${MY_HTDOCSDIR}/cgi-bin" \
- CONF="${D}/etc" \
- PREFIX="${D}/usr" \
- PACKAGE_DIR="${D}" \
- INSTALLDIRS=vendor \
- GBROWSE_ROOT=gbrowse \
- DESTDIR="${ROOT}" \
- || die
-}
-
-src_install() {
- mydoc="Changes README TODO INSTALL"
- perl-module_src_install
-
- # TODO: write our own readme
- webapp_postinst_txt en "${S}/INSTALL"
- webapp_src_install
-# find "${D}" -type f | xargs sed -i "s|${D}||" || die
-}