diff options
Diffstat (limited to 'sci-biology/kat/files/kat-2.4.1-ignore-bundled-deps.patch')
| -rw-r--r-- | sci-biology/kat/files/kat-2.4.1-ignore-bundled-deps.patch | 101 |
1 files changed, 0 insertions, 101 deletions
diff --git a/sci-biology/kat/files/kat-2.4.1-ignore-bundled-deps.patch b/sci-biology/kat/files/kat-2.4.1-ignore-bundled-deps.patch deleted file mode 100644 index 649f3ecd8..000000000 --- a/sci-biology/kat/files/kat-2.4.1-ignore-bundled-deps.patch +++ /dev/null @@ -1,101 +0,0 @@ ---- configure.ac.ori 2018-04-22 12:19:37.318794996 +0200 -+++ configure.ac 2018-04-22 12:20:43.310663598 +0200 -@@ -172,8 +172,8 @@ - - - AC_CONFIG_HEADERS([config.h]) --AC_CONFIG_FILES([Makefile doc/Makefile doc/source/conf.py lib/kat.pc lib/Makefile src/Makefile tests/Makefile tests/compat.sh deps/seqan-library-2.0.0/Makefile scripts/setup.py scripts/kat/__init__.py scripts/Makefile]) --AC_CONFIG_SUBDIRS([deps/jellyfish-2.2.0]) -+AC_CONFIG_FILES([Makefile doc/Makefile doc/source/conf.py lib/kat.pc lib/Makefile src/Makefile tests/Makefile tests/compat.sh deps/seqan-library-2.0.0/Makefile scripts/setup.py scripts/kat/__init__.py scripts/Makefile]) -+AC_CONFIG_SUBDIRS([deps/jellyfish-2.2.0]) - AC_OUTPUT - - pystr="detected ${PYTHON_VERSION}. Plotting and downstream analysis enabled." ---- lib/Makefile.am.ori 2018-04-22 15:30:34.983653065 +0200 -+++ lib/Makefile.am 2018-04-22 15:30:46.143961300 +0200 -@@ -7,8 +7,7 @@ - - libkat_la_LDFLAGS = \ - -version-info 2:4:0 \ -- -L../deps/jellyfish-2.2.0 \ -- -L../deps/boost/build/lib -+ -L../deps/jellyfish-2.2.0 - - libkat_la_SOURCES = \ - src/matrix_metadata_extractor.cc \ -@@ -31,7 +30,6 @@ - - libkat_la_CPPFLAGS = \ - -I$(top_srcdir)/deps/jellyfish-2.2.0/include \ -- -I$(top_srcdir)/deps/boost/build/include \ - -I$(top_srcdir)/lib/include \ - -DKAT_SITE_PKGS='"$(libdir)/python$(PYTHON_VERSION)/site-packages"' \ - @AM_CPPFLAGS@ ---- src/Makefile.am.ori 2018-04-22 15:30:46.203962959 +0200 -+++ src/Makefile.am 2018-04-22 15:31:41.385487008 +0200 -@@ -14,7 +14,6 @@ - kat_CPPFLAGS = \ - -I$(top_srcdir)/deps/seqan-library-2.0.0/include \ - -I$(top_srcdir)/deps/jellyfish-2.2.0/include \ -- -I$(top_srcdir)/deps/boost/build/include \ - -I$(top_srcdir)/lib/include \ - -DKAT_SITE_PKGS='"$(libdir)/python$(PYTHON_VERSION)/site-packages"' \ - @AM_CPPFLAGS@ -@@ -23,17 +22,16 @@ - -static \ - -L../lib \ - -L../deps/jellyfish-2.2.0 \ -- -L../deps/boost/build/lib \ - @AM_LDFLAGS@ - - kat_LDADD = \ - -lkat \ - -lkat_jellyfish \ -- ../deps/boost/build/lib/libboost_timer.a \ -- ../deps/boost/build/lib/libboost_chrono.a \ -- ../deps/boost/build/lib/libboost_filesystem.a \ -- ../deps/boost/build/lib/libboost_program_options.a \ -- ../deps/boost/build/lib/libboost_system.a \ -+ -lboost_timer \ -+ -lboost_chrono \ -+ -lboost_filesystem \ -+ -lboost_program_options \ -+ -lboost_system \ - @AM_LIBS@ - - noinst_HEADERS = \ ---- tests/Makefile.am.ori 2018-04-22 15:31:41.505490322 +0200 -+++ tests/Makefile.am 2018-04-22 15:32:37.787044756 +0200 -@@ -31,7 +31,6 @@ - -I$(top_srcdir)/lib/include \ - -I$(top_srcdir)/deps/seqan-library-2.0.0/include \ - -I$(top_srcdir)/deps/jellyfish-2.2.0/include \ -- -I$(top_srcdir)/deps/boost/build/include \ - -DDATADIR=\"$(srcdir)/data\" \ - -DKAT_SITE_PKGS='"$(libdir)/python$(PYTHON_VERSION)/site-packages"' \ - @AM_CPPFLAGS@ -@@ -61,7 +60,6 @@ - -L. \ - -L../lib \ - -L../deps/jellyfish-2.2.0 \ -- -L../deps/boost/build/lib \ - @AM_LDFLAGS@ - - check_unit_tests_LDADD = \ -@@ -69,11 +67,11 @@ - -lgtest \ - -lkat \ - -lkat_jellyfish \ -- ../deps/boost/build/lib/libboost_timer.a \ -- ../deps/boost/build/lib/libboost_chrono.a \ -- ../deps/boost/build/lib/libboost_filesystem.a \ -- ../deps/boost/build/lib/libboost_program_options.a \ -- ../deps/boost/build/lib/libboost_system.a \ -+ -lboost_timer \ -+ -lboost_chrono \ -+ -lboost_filesystem \ -+ -lboost_program_options \ -+ -lboost_system \ - @AM_LIBS@ - - include gtest.mk |