1 files changed, 44 insertions, 0 deletions
diff --git a/sci-biology/kat/kat-2.4.1.ebuild b/sci-biology/kat/kat-2.4.1.ebuild
new file mode 100644
index 000000000..466b5431e
--- /dev/null
+++ b/sci-biology/kat/kat-2.4.1.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python3_{5,6} ) # requires python >= 3.1 but more features with >=3.5
+# https://github.com/Ensembl/Bio-DB-HTS/issues/30
+
+inherit python-r1 eutils flag-o-matic
+
+DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)"
+HOMEPAGE="https://github.com/TGAC/KAT"
+SRC_URI="https://github.com/TGAC/KAT/archive/Release-${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS=""
+IUSE="cpu_flags_x86_sse doc"
+
+DEPEND="
+	>=dev-libs/boost-1.52
+	dev-python/tabulate
+	dev-python/matplotlib
+	dev-python/numpy
+	sci-libs/scipy
+	doc? ( dev-python/sphinx )"
+RDEPEND="${DEPEND}"
+# contains bundled *modified* version of jellyfish-2.2 which should install under different filenames
+# contains embedded sci-biology/seqan
+
+S="${WORKDIR}"/KAT-Release-"${PV}"
+
+src_prepare(){
+	default
+	sh build_boost.sh || die
+	sh autogen.sh || die
+}
+
+src_configure(){
+	local myconf=()
+	myconf+=( --disable-gnuplot ) # python3 does better image rendering, no need for gnuplot
+	use cpu_flags_x86_sse && myconf+=( $(use_with cpu_flags_x86_sse sse) ) # pass down to jellyfish-2.20/configure
+	PYTHON_VERSION=3 econf ${myconf[@]}
+}