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Diffstat (limited to 'sci-biology/kat/kat-9999.ebuild')
| -rw-r--r-- | sci-biology/kat/kat-9999.ebuild | 84 |
1 files changed, 0 insertions, 84 deletions
diff --git a/sci-biology/kat/kat-9999.ebuild b/sci-biology/kat/kat-9999.ebuild deleted file mode 100644 index acbdac423..000000000 --- a/sci-biology/kat/kat-9999.ebuild +++ /dev/null @@ -1,84 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7,8,9} ) -DISTUTILS_USE_SETUPTOOLS=rdepend -# https://github.com/Ensembl/Bio-DB-HTS/issues/30 - -inherit autotools distutils-r1 git-r3 - -DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)" -HOMEPAGE="https://github.com/TGAC/KAT" -EGIT_REPO_URI="https://github.com/TGAC/KAT.git" -EGIT_CHECKOUT_DIR="${WORKDIR}"/KAT-Release-"${PV}" - -LICENSE="GPL-3+" -SLOT="0" -KEYWORDS="" -IUSE="cpu_flags_x86_sse static-libs test" - -CDEPEND=" - >=dev-libs/boost-1.52[${PYTHON_USEDEP}] - sys-libs/zlib - dev-python/tabulate[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] -" -DEPEND="${CDEPEND} - test? ( sys-process/time )" -RDEPEND="${CDEPEND}" -# contains bundled and *modified* version of jellyfish-2.2.0 -# (libkat_jellyfish.{a,so} and "kat_" prefixes are added to all binaries) -# https://github.com/TGAC/KAT/issues/93#issuecomment-383377666 -# contains embedded sci-biology/seqan headers - -PATCHES=( - "${FILESDIR}"/kat-2.4.2-ignore-bundled-deps.patch - "${FILESDIR}"/kat-2.4.2-no_static_build.patch - ) - -S="${WORKDIR}"/KAT-Release-"${PV}" - -distutils_enable_sphinx "${S}/doc/source" --no-autodoc -distutils_enable_tests pytest - -src_prepare(){ - default - rm -rf deps/boost || die "Failed to zap bundled boost" - eautoreconf -} - -src_configure(){ - python_setup - local myconf=() - myconf+=( - --disable-gnuplot - --disable-pykat-install - $(use_enable static-libs static) - ) # python3 does better image rendering, no need for gnuplot - # pass down to jellyfish-2.2.0/configure - use cpu_flags_x86_sse && myconf+=( $(use_with cpu_flags_x86_sse sse) ) - econf ${myconf[@]} -} - -src_compile(){ - default - pushd scripts >/dev/null || die - distutils-r1_src_compile - popd > /dev/null || die -} - -src_install(){ - default - pushd scripts >/dev/null || die - distutils-r1_src_install - popd > /dev/null || die -} - -src_test(){ - default - python_foreach_impl python_test -} |