1 files changed, 0 insertions, 100 deletions
diff --git a/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch b/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch
deleted file mode 100644
index 4900e529a..000000000
--- a/sci-biology/ncbi-tools++/files/malloc_initialize_upstream_fix.patch
+++ /dev/null
@@ -1,100 +0,0 @@
---- trunk/c++/src/app/netcache/nc_memory.cpp    2011/12/16 17:42:54     52330
-+++ trunk/c++/src/app/netcache/nc_memory.cpp    2012/02/27 14:38:30     53136
-@@ -360,7 +360,7 @@
-     m_ObjLock.Lock();
-     ++m_SysFrees;
-     m_SystemMem -= alloced_size;
--    m_LostMem   -= alloced_size -= asked_size;
-+    m_LostMem   -= alloced_size - asked_size;
-     m_ObjLock.Unlock();
- }
- 
-@@ -2539,7 +2539,7 @@
- bool
- CNCMemManager::InitializeApp(void)
- {
--    try {
-+    /*try {
-         CSQLITE_Global::SetCustomMallocFuncs(&s_NCMallocMethods);
-     }
-     catch (CSQLITE_Exception& ex) {
-@@ -2547,13 +2547,15 @@
-         return false;
-     }
- 
--    return CNCMMCentral::RunLateInit();
-+    return CNCMMCentral::RunLateInit();*/
-+    g_InitNCThreadIndexes();
-+    return true;
- }
- 
- void
- CNCMemManager::FinalizeApp(void)
- {
--    CNCMMCentral::PrepareToStop();
-+    //CNCMMCentral::PrepareToStop();
- }
- 
- void
-@@ -2571,28 +2573,29 @@
- void
- CNCMemManager::PrintStats(CPrintTextProxy& proxy)
- {
--    CNCMMStats stats_sum;
-+    /*CNCMMStats stats_sum;
-     CNCMMStats::CollectAllStats(&stats_sum);
--    stats_sum.Print(proxy);
-+    stats_sum.Print(proxy);*/
- }
- 
- size_t
- CNCMemManager::GetMemoryLimit(void)
- {
--    return CNCMMCentral::GetMemLimit();
-+    return 0;//CNCMMCentral::GetMemLimit();
- }
- 
- size_t
- CNCMemManager::GetMemoryUsed(void)
- {
--    CNCMMStats stat;
-+    /*CNCMMStats stat;
-     CNCMMStats::CollectAllStats(&stat);
--    return stat.GetSystemMem();
-+    return stat.GetSystemMem();*/
-+    return 0;
- }
- 
- END_NCBI_SCOPE
- 
--
-+/*
- void*
- operator new (size_t size)
- #ifndef NCBI_COMPILER_MSVC
-@@ -2626,13 +2629,13 @@
- {
-     NCBI_NS_NCBI::CNCMMCentral::DeallocMemory(ptr);
- }
--
-+*/
- #ifdef __GLIBC__
- // glibc has special method of overriding C library allocation functions.
- 
- #include <malloc.h>
- 
--
-+/*
- void* s_NCMallocHook(size_t size, const void* caller)
- {
-     return NCBI_NS_NCBI::CNCMMCentral::AllocMemory(size);
-@@ -2656,7 +2659,7 @@
- }
- 
- void (*__malloc_initialize_hook) (void) = s_NCInitMallocHook;
--
-+*/
- #elif !defined(NCBI_OS_MSWIN)
- // Changing of C library allocation functions on Windows is very tricky (if
- // possible at all) and NetCache will never run in production on Windows. So
-