diff options
Diffstat (limited to 'sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild')
| -rw-r--r-- | sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 16 |
1 files changed, 10 insertions, 6 deletions
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild index 64e8c234e..2a77c11d2 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild @@ -26,14 +26,12 @@ IUSE=" debug static-libs static threads pch test wxwidgets odbc berkdb boost bzip2 cppunit curl expat fastcgi fltk freetype ftds gif - glut hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python + glut gnutls hdf5 icu jpeg lzo mesa mysql muparser opengl pcre png python sablotron sqlite sqlite3 ssl tiff xerces xalan xml xpm xslt X" -# removed IUSE=gnutls due to Gentoo bug #421777 #KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" KEYWORDS="" # sys-libs/db should be compiled with USE=cxx -# dropped 'gnutls? ( net-libs/gnutls[lzo] )' from DEPEND due to Gentoo bug #421777 DEPEND=" berkdb? ( sys-libs/db:4.3[cxx] ) ftds? ( dev-db/freetds ) @@ -51,6 +49,7 @@ DEPEND=" glut? ( media-libs/freeglut ) freetype? ( media-libs/freetype ) fastcgi? ( www-apache/mod_fastcgi ) + gnutls? ( net-libs/gnutls[lzo] ) python? ( dev-lang/python ) cppunit? ( dev-util/cppunit ) icu? ( dev-libs/icu ) @@ -114,14 +113,19 @@ src_prepare() { "${FILESDIR}"/${P}-fix-svn-URL-upstream.patch "${FILESDIR}"/${P}-fix-FreeTDS-upstream.patch "${FILESDIR}"/${P}-support-autoconf-2.60.patch + "${FILESDIR}"/${P}-configure.patch ) epatch ${PATCHES[@]} + # make sure this one is the last one and contains the actual patches applied unless we can have autoconf-2.59 or 2.60 + # https://bugs.gentoo.org/show_bug.cgi?id=514706 tc-export CXX CC cd src/build-system || die # eautoreconf - eautoconf + + # Temporarily disabling eautoconf because we patch configure via ${P}-support-autoconf-2.60.patch + #eautoconf # beware 12.0.0. and previous required autoconf-2.59, a patch for 12.0.0 brings autoconf-2.60 support } @@ -218,7 +222,7 @@ src_configure() { $(use_with pch) $(use_with lzo lzo "${EPREFIX}/usr") $(use_with pcre pcre "${EPREFIX}/usr") -# $(use_with gnutls gnutls "${EPREFIX}/usr") + $(use_with gnutls gnutls "${EPREFIX}/usr") $(use_with ssl openssl "${EPREFIX}/usr") $(use_with ftds ftds "${EPREFIX}/usr") $(use_with mysql mysql "${EPREFIX}/usr") @@ -251,7 +255,7 @@ src_configure() { $(use_with xpm xpm "${EPREFIX}/usr") $(use_with curl curl "${EPREFIX}/usr") # $(use_with X x "${EPREFIX}/usr") - $(use_with X x) +# $(use_with X x) # there is no --with-x option ) # http://www.ncbi.nlm.nih.gov/books/NBK7167/ |