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Diffstat (limited to 'sci-biology/nilearn/nilearn-0.9.1.ebuild')
-rw-r--r-- | sci-biology/nilearn/nilearn-0.9.1.ebuild | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/nilearn/nilearn-0.9.1.ebuild b/sci-biology/nilearn/nilearn-0.9.1.ebuild new file mode 100644 index 000000000..425e79444 --- /dev/null +++ b/sci-biology/nilearn/nilearn-0.9.1.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..11} ) + +inherit distutils-r1 + +DESCRIPTION="Fast and easy statistical learning on NeuroImaging data" +HOMEPAGE="http://nilearn.github.io/" +SRC_URI="https://github.com/nilearn/nilearn/archive/${PV}.tar.gz -> ${P}.gh.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +RDEPEND=" + >=dev-python/joblib-0.15[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + >=dev-python/matplotlib-3[${PYTHON_USEDEP}] + >=dev-python/numpy-1.18[${PYTHON_USEDEP}] + >=dev-python/pandas-1[${PYTHON_USEDEP}] + >=dev-python/requests-2[${PYTHON_USEDEP}] + >=dev-python/scipy-1.5[${PYTHON_USEDEP}] + >=sci-libs/nibabel-3[${PYTHON_USEDEP}] + >=sci-libs/scikit-learn-0.22[${PYTHON_USEDEP}] +" + +PATCHES=( "${FILESDIR}/${P}-tests.patch" ) + +distutils_enable_tests pytest + +EPYTEST_IGNORE=( + "examples/05_glm_second_level/plot_second_level_association_test.py" + "examples/05_glm_second_level/plot_second_level_one_sample_test.py" + "examples/05_glm_second_level/plot_second_level_two_sample_test.py" +) +# Reported upstream: +# https://github.com/nilearn/nilearn/issues/3232 +EPYTEST_DESELECT=( + "nilearn/decoding/tests/test_decoder.py::test_decoder_dummy_classifier" + "nilearn/interfaces/fmriprep/tests/test_load_confounds.py::test_nilearn_standardize[False-True-zscore]" + "nilearn/interfaces/fmriprep/tests/test_load_confounds.py::test_nilearn_standardize[False-True-psc]" + "nilearn/interfaces/fmriprep/tests/test_load_confounds.py::test_nilearn_standardize[True-True-zscore]" + "nilearn/interfaces/fmriprep/tests/test_load_confounds.py::test_nilearn_standardize[True-True-psc]" +) + +python_test() { + echo "backend: Agg" > matplotlibrc + MPLCONFIGDIR=. epytest +} |